NRCS: Plants for Pollinators in the Intermountain West
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
"National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary."
Intro 1996 National List of Vascular Plant Species That Occur in Wetlands The Fish and Wildlife Service has prepared a National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary (1996 National List). The 1996 National List is a draft revision of the National List of Plant Species That Occur in Wetlands: 1988 National Summary (Reed 1988) (1988 National List). The 1996 National List is provided to encourage additional public review and comments on the draft regional wetland indicator assignments. The 1996 National List reflects a significant amount of new information that has become available since 1988 on the wetland affinity of vascular plants. This new information has resulted from the extensive use of the 1988 National List in the field by individuals involved in wetland and other resource inventories, wetland identification and delineation, and wetland research. Interim Regional Interagency Review Panel (Regional Panel) changes in indicator status as well as additions and deletions to the 1988 National List were documented in Regional supplements. The National List was originally developed as an appendix to the Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al.1979) to aid in the consistent application of this classification system for wetlands in the field.. The 1996 National List also was developed to aid in determining the presence of hydrophytic vegetation in the Clean Water Act Section 404 wetland regulatory program and in the implementation of the swampbuster provisions of the Food Security Act. While not required by law or regulation, the Fish and Wildlife Service is making the 1996 National List available for review and comment. -
Phylogenetic Relationships of Phyciodes Butterfly Species (Lepidoptera: Nymphalidae): Complex Mtdna Variation and Species Delimitations
Systematic Entomology (2003) 28, 257±273 Phylogenetic relationships of Phyciodes butterfly species (Lepidoptera: Nymphalidae): complex mtDNA variation and species delimitations NIKLAS WAHLBERG*, RITA OLIVEIRA* andJAMES A. SCOTTy *Metapopulation Research Group, Department of Ecology and Systematics, University of Helsinki, Finland, and yLakewood, Colorado, U.S.A. Abstract. Mitochondrial DNA variation wasstudied in the butterfly genus Phyciodes (Lepidoptera: Nymphalidae) by sequencing 1450 bp of the COI gene from 140 individuals of all eleven currently recognized species. The study focused on four species in particular that have been taxonomically difficult for the past century, P. tharos, P. cocyta, P. batesii and P. pulchella. A cladistic analysis of ninety-eight unique haplotypesshowedthat Phyciodes formsa monophyletic group with P. graphica as the most basal species. Of the three informal species groupsdescribed for Phyciodes, only one (the mylitta-group) isunambiguously monophyletic. Within the tharos-group, seven well supported clades were found that correspond to three taxa, P. tharos, P. pulchella and a grade consisting of P. cocyta and P. batesii haplotypesinterdigitated with each other. None of the clades is formed exclusively by one species. The patterns of haplotype variation are the result of both retained ancient polymorphism and introgression. Introgression appearsto be mostcommon between P. cocyta and P. batesii; however, these two species occur sympatrically and are morphologically and ecologically distinct, suggesting that the level of current introgression does not seem to be enough to threaten their genetic integrity. The results indicate that mitochondrial DNA sequences must be used with great caution in delimiting species, especially when infraspecific samples are few, or introgression seems to be rampant. -
Big Changes in the Great Basin Gail Wells Gail Wells Communications
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln JFSP Fire Science Digests U.S. Joint Fire Science Program 2008 Big Changes in the Great Basin Gail Wells Gail Wells Communications Follow this and additional works at: http://digitalcommons.unl.edu/jfspdigest Part of the Forest Biology Commons, Forest Management Commons, Other Forestry and Forest Sciences Commons, and the Wood Science and Pulp, Paper Technology Commons Wells, Gail, "Big Changes in the Great Basin" (2008). JFSP Fire Science Digests. 3. http://digitalcommons.unl.edu/jfspdigest/3 This Article is brought to you for free and open access by the U.S. Joint Fire Science Program at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in JFSP Fire Science Digests by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. FIRE SCIENCE DIGEST ISSUE 3 JUNE 2008 ISSUE 3 JUNE 2008 Big Changes in the Great Basin JFSP-funded researchers are exploring the ecological functioning of sagebrush-steppe communities in the Great Basin and other places in the dry Intermountain West. Their work is helping managers effectively use tools such as tree mastication and prescribed fire to help these communities become more resilient in the face of invasive weeds. Other research is finding ways to reestablish native vegetation on sites where weedy invaders have pushed the community past the point where it can recover on its own. FIRE SCIENCE DIGEST ISSUE 3 JUNE 2008 When it comes to endangered ecosystems, the Last summer’s Murphy Complex fire in Idaho and arid Intermountain West has more than its share. -
A General Idea About Phytomelanin Layer in Some
Indian Journal of Plant Sciences ISSN: 2319-3824 (Online) An Online International Journal Available at http://www.cibtech.org/jps.htm 2013 Vol. 2 (4) October-December, pp.44-48/Jana and Mukherjee Review Article A GENERAL IDEA ABOUT PHYTOMELANIN LAYER IN SOME COMPOSITAE *Jana Bidyut Kumar and Mukherjee Sobhan Kumar Taxonomy and Biosystematics Laboratory, Department of Botany, University of Kalyani, Kalyani- 741235, Nadia, West Bengal, India *Author for Correspondence ABSTRACT The present paper deals with the general idea about the phytomelanin layer, on the surface of cypsela of some Compositae, with the help of both compound light microscope and scanning electrone microscope. Phytomelanin layer is made up of hard, black, water resistant resinous or tanniniferous or polyvinyl alcohol containing disputed substance, usually found in the cypselar wall of some members of the family Compositae belonging to the tribes-Coreopsideae, Helenieae, Heliantheae, Eupatorieae, Millerieae, Perityleae etc. Key Words: Phytomelanin Layer; Cypselar Surface; Compositae INTRODUCTION The Compositae are regarded as a fairly advanced family of the dicotyledons (Takhtajan, 1997) and are one of the largest family of angiosperms, consisting of 43 tribes, 1600- 1700 genera and 24000 species (Funk et al., 2009). Many members of the Compositae are cosmopolitan, found specially in temperate or tropical montane regions and open and / or dry habitats. Phytomelanin layer is made up of a type of hard, black, water resistant resinous or tanniniferous or polyvinyl alcohol containing disputed phytomelanin substance, usually found in the cypselar wall of some members of the family Compositae belonging to the tribes Coreopsideae (Jana and Mukherjee, 2012), Heliantheae, Eupatorieae (Pandey and Dakhal, 2001) etc. -
Energy Development and the Changing Economy of the West
A Report from the ENERGY AND THE WEST Series by Energy Development and the Changing Economy of the West September 2008 Energy Development and the Changing Economy of the West Headwaters Economics Bozeman, Montana September, 2008 - revised 06/24/09 PUBLISHED ONLINE : www.headwaterseconomics.org/energy ABOUT HEADWATERS ECONOMICS Headwaters Economics is an independent, nonprofit research group. Our mission is to improve community development and land management decisions in the West. P.O. Box 7059 Bozeman, MT 59771 406-599-7423 www.headwaterseconomics.org Cover design and layout by Michael Cutter. ii ABOUT THE ENERGY AND THE WEST SERIES This report is the first in a series Energy and the West published by Headwaters Economics on the topic of energy development. This series is designed to assist the public and public officials in making informed choices about energy development that will benefit the region over the long term. In the reports in the Energy and the West series listed below, we consider the policy context for en- ergy development in the West. Our focus is the impact of energy development on states, counties, and communities, from the perspectives of economic performance (i.e., jobs, personal income, wages) and fiscal health (i.e., state and county budgets, revenues and expenses). The series also includes state and local area case studies that explore benefits and costs in greater detail. Titles in the Energy and the West series: • Energy Development and the Changing Economy of the West • U.S. Energy Needs and the Role of Western -
KALMIOPSIS Journal of the Native Plant Society of Oregon
KALMIOPSIS Journal of the Native Plant Society of Oregon Kalmiopsis leachiana ISSN 1055-419X Volume 20, 2013 &ôùĄÿĂùñü KALMIOPSIS (irteen years, fourteen issues; that is the measure of how long Journal of the Native Plant Society of Oregon, ©2013 I’ve been editing Kalmiopsis. (is is longer than I’ve lived in any given house or worked for any employer. I attribute this longevity to the lack of deadlines and time clocks and the almost total freedom to create a journal that is a showcase for our state and society. (ose fourteen issues contained 60 articles, 50 book reviews, and 25 tributes to Fellows, for a total of 536 pages. I estimate about 350,000 words, an accumulation that records the stories of Oregon’s botanists, native )ora, and plant communities. No one knows how many hours, but who counts the hours for time spent doing what one enjoys? All in all, this editing gig has been quite an education for me. I can’t think of a more e*ective and enjoyable way to make new friends and learn about Oregon plants and related natural history than to edit the journal of the Native Plant Society of Oregon. Now it is time for me to move on, but +rst I o*er thanks to those before me who started the journal and those who worked with me: the FEJUPSJBMCPBSENFNCFST UIFBVUIPSTXIPTIBSFEUIFJSFYQFSUJTF UIFSFWJFXFST BOEUIF4UBUF#PBSETXIPTVQQPSUFENZXPSL* especially thank those who will follow me to keep this journal &ôùĄÿĂ$JOEZ3PDIÏ 1I% in print, to whom I also o*er my +les of pending manuscripts, UIFTFSWJDFTPGBOFYQFSJFODFEQBHFTFUUFS BSFMJBCMFQSJOUFSBOE &ôùĄÿĂùñü#ÿñĂô mailing service, and the opportunity of a lifetime: editing our +ne journal, Kalmiopsis. -
CDFG Natural Communities List
Department of Fish and Game Biogeographic Data Branch The Vegetation Classification and Mapping Program List of California Terrestrial Natural Communities Recognized by The California Natural Diversity Database September 2003 Edition Introduction: This document supersedes all other lists of terrestrial natural communities developed by the Natural Diversity Database (CNDDB). It is based on the classification put forth in “A Manual of California Vegetation” (Sawyer and Keeler-Wolf 1995 and upcoming new edition). However, it is structured to be compatible with previous CNDDB lists (e.g., Holland 1986). For those familiar with the Holland numerical coding system you will see a general similarity in the upper levels of the hierarchy. You will also see a greater detail at the lower levels of the hierarchy. The numbering system has been modified to incorporate this richer detail. Decimal points have been added to separate major groupings and two additional digits have been added to encompass the finest hierarchal detail. One of the objectives of the Manual of California Vegetation (MCV) was to apply a uniform hierarchical structure to the State’s vegetation types. Quantifiable classification rules were established to define the major floristic groups, called alliances and associations in the National Vegetation Classification (Grossman et al. 1998). In this document, the alliance level is denoted in the center triplet of the coding system and the associations in the right hand pair of numbers to the left of the final decimal. The numbers of the alliance in the center triplet attempt to denote relationships in floristic similarity. For example, the Chamise-Eastwood Manzanita alliance (37.106.00) is more closely related to the Chamise- Cupleaf Ceanothus alliance (37.105.00) than it is to the Chaparral Whitethorn alliance (37.205.00). -
Wildflowers Near Boise Cascade (Wenas) Campground (In the Upper
Wildflowers Near Boise Cascade (Wenas) Campground (in the upper Wenas Valley) Boise Cascade Lands Yakima County, WA from a trip held May 24, 2019 T16N R16E S3; T17N R16E S34, S35 Updated: December 13, 2019 Common Name Scientific Name Family Ferns and Horsetails ____ Fragile Fern Cystopteris fragilis Cystopteridaceae Monocots - Sedges, Rushes, Grasses & Herbaceous Wildflowers ____ Tapertip Onion Allium accuminatum Amaryllidaceae ____ Common Camas Camassia quamash (ssp. maxima ?) Asparagaceae ____ Douglas' Brodiaea Triteleia grandiflora v. grandiflora Asparagaceae ____ Elk Sedge Carex geyeri Cyperaceae ____ Grass Widows Olsynium douglasii v. douglasii Iridaceae ____ Sagebrush Mariposa Calochortus macrocarpus ssp. macrocarpus Liliaceae ____ Yellow Bells Fritillaria pudica Liliaceae ____ Panicled Deathcamas Toxicoscordion paniculatum Melanthiaceae ____ Meadow Deathcamas Toxicosordion venenosum Melanthiaceae ____ Common Western Needlegrass Achnatherum (occidentale ssp. pubescens ?) Poaceae ____ Field Meadow Foxtail Alopecurus pratensis Poaceae ____ Smooth Brome Bromus inermis Poaceae ____ Cheatgrass Bromus tectorum Poaceae ____ Onepike Oatgrass Danthonia unispicata Poaceae ____ Bottlebrush Squirreltail Elymus elymoides Poaceae ____ Bulbous Bluegrass Poa bulbosa Poaceae ____ Bluebunch Wheatgrass Pseudoroegenaria spicata v. spicata Poaceae Trees and Shrubs ____ Blue Elderberry Sambucus cerulea Adoxaceae ____ Stiff Sagebrush Artemisia rigida Asteraceae ____ Gray Rabbitbrush Ericameria nauseosa v. speciosa Asteraceae ____ Shining Oregon Grape Berberis aquifolium Berberidaceae ____ Mountain Alder Alnus incana ssp. tenuifolia Betulaceae ____ Common Snowberry Symphoricarpos albus v. laevigatus Caprifoliaceae ____ Kinnikinnik Arctostaphylos nevadensis ssp. nevadensis Ericaceae ____ Wax Currant Ribes cereum v. cereum Grossulariaceae ____ Fir Abies amabilis or A. grandis Pinaceae ____ Ponderosa Pine Pinus ponderosa v. ponderosa Pinaceae ____ Douglas Fir Pseudotsuga menziesii v. menziesii Pinaceae ____ Snowbrush Ceanothus velutinus v. -
Palynological Evolutionary Trends Within the Tribe Mentheae with Special Emphasis on Subtribe Menthinae (Nepetoideae: Lamiaceae)
Plant Syst Evol (2008) 275:93–108 DOI 10.1007/s00606-008-0042-y ORIGINAL ARTICLE Palynological evolutionary trends within the tribe Mentheae with special emphasis on subtribe Menthinae (Nepetoideae: Lamiaceae) Hye-Kyoung Moon Æ Stefan Vinckier Æ Erik Smets Æ Suzy Huysmans Received: 13 December 2007 / Accepted: 28 March 2008 / Published online: 10 September 2008 Ó Springer-Verlag 2008 Abstract The pollen morphology of subtribe Menthinae Keywords Bireticulum Á Mentheae Á Menthinae Á sensu Harley et al. [In: The families and genera of vascular Nepetoideae Á Palynology Á Phylogeny Á plants VII. Flowering plantsÁdicotyledons: Lamiales (except Exine ornamentation Acanthaceae including Avicenniaceae). Springer, Berlin, pp 167–275, 2004] and two genera of uncertain subtribal affinities (Heterolamium and Melissa) are documented in Introduction order to complete our palynological overview of the tribe Mentheae. Menthinae pollen is small to medium in size The pollen morphology of Lamiaceae has proven to be (13–43 lm), oblate to prolate in shape and mostly hexacol- systematically valuable since Erdtman (1945) used the pate (sometimes pentacolpate). Perforate, microreticulate or number of nuclei and the aperture number to divide the bireticulate exine ornamentation types were observed. The family into two subfamilies (i.e. Lamioideae: bi-nucleate exine ornamentation of Menthinae is systematically highly and tricolpate pollen, Nepetoideae: tri-nucleate and hexa- informative particularly at generic level. The exine stratifi- colpate pollen). While the -
Facilitation of Yucca Brevifolia Recruitment by Mojave Desert Shrubs
UNLV Retrospective Theses & Dissertations 1-1-1998 Facilitation of Yucca brevifolia recruitment by Mojave Desert shrubs Steve B Brittingham University of Nevada, Las Vegas Follow this and additional works at: https://digitalscholarship.unlv.edu/rtds Repository Citation Brittingham, Steve B, "Facilitation of Yucca brevifolia recruitment by Mojave Desert shrubs" (1998). UNLV Retrospective Theses & Dissertations. 950. http://dx.doi.org/10.25669/ms22-zauw This Thesis is protected by copyright and/or related rights. It has been brought to you by Digital Scholarship@UNLV with permission from the rights-holder(s). You are free to use this Thesis in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Thesis has been accepted for inclusion in UNLV Retrospective Theses & Dissertations by an authorized administrator of Digital Scholarship@UNLV. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter free, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. -
2021 Award Recipients
2021 Charles Redd Center Award Recipients Notification and instruction emails will be sent out to all applicants with specifics Annaley Naegle Redd Assistantship Phil S. Allen, Plant and Wildlife Sciences, Brigham Young University, “Sub-alpine Wildflower Meadows as a Template for Water-Conserving Landscape Design” Richard A. Gill, Biology, Brigham Young University, “Biocrust Controls over Regional Carbon Cycling on the Colorado Plateau” Randy Larsen, Plant and Wildlife Sciences, Brigham Young University, “Mountain Lions (Puma concolor), Human Recreation, and the Wildland-Urban Interface: Improving Conservation of an Iconic Species Native to the West” Riley Nelson, Biology, Brigham Young University, “The Bee-Killers: Taxonomy and Phylogenetics of the Robber Fly Genus Proctacanthus (Insecta: Diptera: Asilidae) with Special Reference to Those of Western North America” Sam St. Clair, Plant and Wildlife Sciences, Brigham Young University, “Wildfire and Drought Impacts on Plant Invasions in the Western United States” Annaley Naegle Redd Student Award in Women’s History Amy Griffin, Interdisciplinary (Communications), Brigham Young University, “The Impact of Female Role Models in Television Media on the Perceived Electability of Women” Emily Larsen, History, University of Utah, “Artistic Frontiers: Women and the Making of the Utah Art Scene, 1880– 1950” Charles Redd Fellowship Award in Western American History David R M Beck, Native American Studies, University of Montana, “‘Bribed with Our Own Money,’ Federal Misuse of Tribal Funds in the Termination