Etmopterus Spinax, the Velvet Belly Lanternshark, Does Not Use Bacterial
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New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset
Molecular Phylogenetics and Evolution 110 (2017) 27–38 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset ⇑ Alex Dornburg a, , Jeffrey P. Townsend b,c,d, Willa Brooks a, Elizabeth Spriggs b, Ron I. Eytan e, Jon A. Moore f,g, Peter C. Wainwright h, Alan Lemmon i, Emily Moriarty Lemmon j, Thomas J. Near b,k a North Carolina Museum of Natural Sciences, Raleigh, NC, USA b Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA c Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA d Department of Biostatistics, Yale University, New Haven, CT 06510, USA e Marine Biology Department, Texas A&M University at Galveston, Galveston, TX 77554, USA f Florida Atlantic University, Wilkes Honors College, Jupiter, FL 33458, USA g Florida Atlantic University, Harbor Branch Oceanographic Institution, Fort Pierce, FL 34946, USA h Department of Evolution & Ecology, University of California, Davis, CA 95616, USA i Department of Scientific Computing, Florida State University, 400 Dirac Science Library, Tallahassee, FL 32306, USA j Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32306, USA k Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA article info abstract Article history: Percomorph fishes represent over 17,100 species, including several model organisms and species of eco- Received 12 April 2016 nomic importance. Despite continuous advances in the resolution of the percomorph Tree of Life, resolu- Revised 22 February 2017 tion of the sister lineage to Percomorpha remains inconsistent but restricted to a small number of Accepted 25 February 2017 candidate lineages. -
Sharks in Crisis: a Call to Action for the Mediterranean
REPORT 2019 SHARKS IN CRISIS: A CALL TO ACTION FOR THE MEDITERRANEAN WWF Sharks in the Mediterranean 2019 | 1 fp SECTION 1 ACKNOWLEDGEMENTS Written and edited by WWF Mediterranean Marine Initiative / Evan Jeffries (www.swim2birds.co.uk), based on data contained in: Bartolí, A., Polti, S., Niedermüller, S.K. & García, R. 2018. Sharks in the Mediterranean: A review of the literature on the current state of scientific knowledge, conservation measures and management policies and instruments. Design by Catherine Perry (www.swim2birds.co.uk) Front cover photo: Blue shark (Prionace glauca) © Joost van Uffelen / WWF References and sources are available online at www.wwfmmi.org Published in July 2019 by WWF – World Wide Fund For Nature Any reproduction in full or in part must mention the title and credit the WWF Mediterranean Marine Initiative as the copyright owner. © Text 2019 WWF. All rights reserved. Our thanks go to the following people for their invaluable comments and contributions to this report: Fabrizio Serena, Monica Barone, Adi Barash (M.E.C.O.), Ioannis Giovos (iSea), Pamela Mason (SharkLab Malta), Ali Hood (Sharktrust), Matthieu Lapinksi (AILERONS association), Sandrine Polti, Alex Bartoli, Raul Garcia, Alessandro Buzzi, Giulia Prato, Jose Luis Garcia Varas, Ayse Oruc, Danijel Kanski, Antigoni Foutsi, Théa Jacob, Sofiane Mahjoub, Sarah Fagnani, Heike Zidowitz, Philipp Kanstinger, Andy Cornish and Marco Costantini. Special acknowledgements go to WWF-Spain for funding this report. KEY CONTACTS Giuseppe Di Carlo Director WWF Mediterranean Marine Initiative Email: [email protected] Simone Niedermueller Mediterranean Shark expert Email: [email protected] Stefania Campogianni Communications manager WWF Mediterranean Marine Initiative Email: [email protected] WWF is one of the world’s largest and most respected independent conservation organizations, with more than 5 million supporters and a global network active in over 100 countries. -
Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha
Research in Zoology 2014, 4(2): 29-42 DOI: 10.5923/j.zoology.20140402.01 Comparative Osteology of the Jaws in Representatives of the Eurypterygian Fishes Yazdan Keivany Department of Natural Resources (Fisheries Division), Isfahan University of Technology, Isfahan, 84156-83111, Iran Abstract The osteology of the jaws in representatives of 49 genera in 40 families of eurypterygian fishes, including: Aulopiformes, Myctophiformes, Lampridiformes, Polymixiiformes, Percopsiformes, Mugiliformes, Atheriniformes, Beloniformes, Cyprinodontiformes, Stephanoberyciformes, Beryciformes, Zeiformes, Gasterosteiformes, Synbranchiformes, Scorpaeniformes (including Dactylopteridae), and Perciformes (including Elassomatidae) were studied. Generally, in this group, the upper jaw consists of the premaxilla, maxilla, and supramaxilla. The lower jaw consists of the dentary, anguloarticular, retroarticular, and sesamoid articular. In higher taxa, the premaxilla bears ascending, articular, and postmaxillary processes. The maxilla usually bears a ventral and a dorsal articular process. The supramaxilla is present only in some taxa. The dentary is usually toothed and bears coronoid and posteroventral processes. The retroarticular is small and located at the posteroventral corner of the anguloarticular. Keywords Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha following method for clearing and staining bone and 1. Introduction cartilage provided in reference [18]. A camera lucida attached to a Wild M5 dissecting stereomicroscope was used Despite the introduction of modern techniques such as to prepare the drawings. The bones in the first figure of each DNA sequencing and barcoding, osteology, due to its anatomical section are arbitrarily shaded and labeled and in reliability, still plays an important role in the systematic the others are shaded in a consistent manner (dark, medium, study of fishes and comprises a major percent of today’s and clear) to facilitate comparison among the taxa. -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
Morphological and Mitochondrial DNA Divergence Validates Blackmouth, Galeus Melastomus, and Atlantic Sawtail Catsharks, Galeus Atlanticus,Asseparatespecies
Journal of Fish Biology (2007) 70 (Supplement C), 346–358 doi:10.1111/j.1095-8649.2007.01455.x, available online at http://www.blackwell-synergy.com Morphological and mitochondrial DNA divergence validates blackmouth, Galeus melastomus, and Atlantic sawtail catsharks, Galeus atlanticus,asseparatespecies R. CASTILHO*†, M. FREITAS*, G. SILVA*, J. FERNANDEZ-CARVALHO‡ AND R. COELHO‡ *Biodiversity and Conservation Group, CCMAR, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal and ‡Coastal Fisheries Research Group, CCMAR, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal (Received 30 August 2006, Accepted 17 January 2007) A total of 60 morphometric traits and nucleotide sequences of the entire mtDNA NADH dehydrogenase subunit 2 (ND2) gene [1047 base pair (bp)] in 23 individuals of blackmouth, Galeus melastomus, and 13 individuals of sawtail catsharks, Galeus atlanticus, caught in Southern Portugal, were examined to test the validity of these two taxa. These sharks closely resemble each other, have overlapping geographical ranges and are difficult to identify by morphological characters. Non-metric multidimensional scaling of morphometric variables indicates a clear separation between the two species, with 10 characters each contributing 2Á12–2Á45% of the total variability between species. Maximum likelihood, parsimony and neighbour-joining trees revealed two major mtDNA haplotype clades, corresponding to the two species, with an average corrected sequence divergence between them of 3Á39 Æ 0Á56%. Within species divergences between haplotypes averaged 0Á27 Æ 0Á18% in G. melastomus and 0Á12 Æ 0Á08% in G. atlanticus. A total of 35 diagnostic nucleotide site differences and four restriction fragment length polymorphism recognition sites in the ND2 gene can be used to distinguish the two species. -
Biodiversity of the Kermadec Islands and Offshore Waters of the Kermadec Ridge: Report of a Coastal, Marine Mammal and Deep-Sea Survey (TAN1612)
Biodiversity of the Kermadec Islands and offshore waters of the Kermadec Ridge: report of a coastal, marine mammal and deep-sea survey (TAN1612) New Zealand Aquatic Environment and Biodiversity Report No. 179 Clark, M.R.; Trnski, T.; Constantine, R.; Aguirre, J.D.; Barker, J.; Betty, E.; Bowden, D.A.; Connell, A.; Duffy, C.; George, S.; Hannam, S.; Liggins, L..; Middleton, C.; Mills, S.; Pallentin, A.; Riekkola, L.; Sampey, A.; Sewell, M.; Spong, K.; Stewart, A.; Stewart, R.; Struthers, C.; van Oosterom, L. ISSN 1179-6480 (online) ISSN 1176-9440 (print) ISBN 978-1-77665-481-9 (online) ISBN 978-1-77665-482-6 (print) January 2017 Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries websites at: http://www.mpi.govt.nz/news-resources/publications.aspx http://fs.fish.govt.nz go to Document library/Research reports © Crown Copyright - Ministry for Primary Industries TABLE OF CONTENTS EXECUTIVE SUMMARY 1 1. INTRODUCTION 3 1.1 Objectives: 3 1.2 Objective 1: Benthic offshore biodiversity 3 1.3 Objective 2: Marine mammal research 4 1.4 Objective 3: Coastal biodiversity and connectivity 5 2. METHODS 5 2.1 Survey area 5 2.2 Survey design 6 Offshore Biodiversity 6 Marine mammal sampling 8 Coastal survey 8 Station recording 8 2.3 Sampling operations 8 Multibeam mapping 8 Photographic transect survey 9 Fish and Invertebrate sampling 9 Plankton sampling 11 Catch processing 11 Environmental sampling 12 Marine mammal sampling 12 Dive sampling operations 12 Outreach 13 3. -
Order BERYCIFORMES ANOPLOGASTRIDAE Anoplogaster
click for previous page 2210 Bony Fishes Order BERYCIFORMES ANOPLOGASTRIDAE Fangtooths by J.R. Paxton iagnostic characters: Small (to 16 cm) Dberyciform fishes, body short, deep, and compressed. Head large, steep; deep mu- cous cavities on top of head separated by serrated crests; very large temporal and pre- opercular spines and smaller orbital (frontal) spine in juveniles of one species, all disap- pearing with age. Eyes smaller than snout length in adults (but larger than snout length in juveniles). Mouth very large, jaws extending far behind eye in adults; one supramaxilla. Teeth as large fangs in pre- maxilla and dentary; vomer and palatine toothless. Gill rakers as gill teeth in adults (elongate, lath-like in juveniles). No fin spines; dorsal fin long based, roughly in middle of body, with 16 to 20 rays; anal fin short-based, far posterior, with 7 to 9 rays; pelvic fin abdominal in juveniles, becoming subthoracic with age, with 7 rays; pectoral fin with 13 to 16 rays. Scales small, non-overlap- ping, spinose, cup-shaped in adults; lateral line an open groove partly covered by scales. No light organs. Total vertebrae 25 to 28. Colour: brown-black in adults. Habitat, biology, and fisheries: Meso- and bathypelagic. Distinctive caulolepis juvenile stage, with greatly enlarged head spines in one species. Feeding mode as carnivores on crustaceans as juveniles and on fishes as adults. Rare deepsea fishes of no commercial importance. Remarks: One genus with 2 species throughout the world ocean in tropical and temperate latitudes. The family was revised by Kotlyar (1986). Similar families occurring in the area Diretmidae: No fangs, jaw teeth small, in bands; anal fin with 18 to 24 rays. -
© Iccat, 2007
A5 By-catch Species APPENDIX 5: BY-CATCH SPECIES A.5 By-catch species By-catch is the unintentional/incidental capture of non-target species during fishing operations. Different types of fisheries have different types and levels of by-catch, depending on the gear used, the time, area and depth fished, etc. Article IV of the Convention states: "the Commission shall be responsible for the study of the population of tuna and tuna-like fishes (the Scombriformes with the exception of Trichiuridae and Gempylidae and the genus Scomber) and such other species of fishes exploited in tuna fishing in the Convention area as are not under investigation by another international fishery organization". The following is a list of by-catch species recorded as being ever caught by any major tuna fishery in the Atlantic/Mediterranean. Note that the lists are qualitative and are not indicative of quantity or mortality. Thus, the presence of a species in the lists does not imply that it is caught in significant quantities, or that individuals that are caught necessarily die. Skates and rays Scientific names Common name Code LL GILL PS BB HARP TRAP OTHER Dasyatis centroura Roughtail stingray RDC X Dasyatis violacea Pelagic stingray PLS X X X X Manta birostris Manta ray RMB X X X Mobula hypostoma RMH X Mobula lucasana X Mobula mobular Devil ray RMM X X X X X Myliobatis aquila Common eagle ray MYL X X Pteuromylaeus bovinus Bull ray MPO X X Raja fullonica Shagreen ray RJF X Raja straeleni Spotted skate RFL X Rhinoptera spp Cownose ray X Torpedo nobiliana Torpedo -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Identification Guide to the Deep-Sea Cartilaginous Fishes Of
Identification guide to the deep–sea cartilaginous fishes of the Southeastern Atlantic Ocean FAO. 2015. Identification guide to the deep–sea cartilaginous fishes of the Southeastern Atlantic Ocean. FishFinder Programme, by Ebert, D.A. and Mostarda, E., Rome, Italy. Supervision: Merete Tandstad, Jessica Sanders (FAO, Rome) Technical editor: Edoardo Mostarda (FAO, Rome) Colour illustrations, cover and graphic design: Emanuela D’Antoni (FAO, Rome) This guide was prepared under the “FAO Deep–sea Fisheries Programme” thanks to a generous funding from the Government of Norway (Support to the implementation of the International Guidelines on the Management of Deep-Sea Fisheries in the High Seas project) for the purpose of assisting states, institutions, the fishing industry and RFMO/As in the implementation of FAO International Guidelines for the Management of Deep-sea Fisheries in the High Seas. It was developed in close collaboration with the FishFinder Programme of the Marine and Inland Fisheries Branch, Fisheries Department, Food and Agriculture Organization of the United Nations (FAO). The present guide covers the deep–sea Southeastern Atlantic Ocean and that portion of Southwestern Indian Ocean from 18°42’E to 30°00’E (FAO Fishing Area 47). It includes a selection of cartilaginous fish species of major, moderate and minor importance to fisheries as well as those of doubtful or potential use to fisheries. It also covers those little known species that may be of research, educational, and ecological importance. In this region, the deep–sea chondrichthyan fauna is currently represented by 50 shark, 20 batoid and 8 chimaera species. This guide includes full species accounts for 37 shark, 9 batoid and 4 chimaera species selected as being the more difficult to identify and/or commonly caught. -
Iso-Luminance Counterillumination Drove Bioluminescent Shark Radiation
OPEN Iso-luminance counterillumination drove SUBJECT AREAS: bioluminescent shark radiation ECOLOGICAL Julien M. Claes1, Dan-Eric Nilsson2, Nicolas Straube3, Shaun P. Collin4 &Je´roˆme Mallefet1 MODELLING ICHTHYOLOGY 1Laboratoire de Biologie Marine, Earth and Life Institute, Universite´ catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 2Lund ADAPTIVE RADIATION Vision Group, Lund University, 22362 Lund, Sweden, 3Department of Biology, College of Charleston, Charleston, SC 29412, USA, 4The School of Animal Biology and The Oceans Institute, The University of Western Australia, Crawley, WA 6009, Australia. Received 13 November 2013 Counterilluminating animals use ventral photogenic organs (photophores) to mimic the residual downwelling light and cloak their silhouette from upward-looking predators. To cope with variable Accepted conditions of pelagic light environments they typically adjust their luminescence intensity. Here, we found 21 February 2014 evidence that bioluminescent sharks instead emit a constant light output and move up and down in the water Published column to remain cryptic at iso-luminance depth. We observed, across 21 globally distributed shark species, 10 March 2014 a correlation between capture depth and the proportion of a ventral area occupied by photophores. This information further allowed us, using visual modelling, to provide an adaptive explanation for shark photophore pattern diversity: in species facing moderate predation risk from below, counterilluminating photophores were partially co-opted for bioluminescent signalling, leading to complex patterns. In addition Correspondence and to increase our understanding of pelagic ecosystems our study emphasizes the importance of requests for materials bioluminescence as a speciation driver. should be addressed to J.M.C. (julien.m. mong sharks, bioluminescence occurs in two shark families only, the Dalatiidae (kitefin sharks) and the [email protected]) Etmopteridae (lanternsharks), which are among the most enigmatic bioluminescent organisms1–3. -
Occurrence of Mature Female of Etmopterus Spinax (Chondrichthyes: Etmopteridae) in the Syrian Coast (Eastern Mediterranean)
ISSN: 2687-8089 DOI: 10.33552/AOMB.2018.01.000504 Advances in Oceanography & Marine Biology Case Report Copyright © All rights are reserved by Adib Saad Occurrence of Mature Female of Etmopterus Spinax (Chondrichthyes: Etmopteridae) in the Syrian Coast (Eastern Mediterranean) Adib Saad* and Hasan Alkusairy Tishreen University, Lattakia, Syria Received Date: August 25, 2018 *Corresponding author: Adib Saad, Tishreen University, Lattakia, Syria. Published Date: Septembert 21, 2018 Abstract Velvet Belly Lantern shark, Etmopterus spinax (Linnaeus, 1758) is recorded for second time in the Syrian coast. A mature female of E. spinax measured 354mm total length, and weighed 208.3g, caught at depth about 300m. the specimen was in stage 3, had two ovaries; contained 9 oocytes measured between 10-5mm in diameter. The width of left and right oviducal gland measured; 8mm and 7mm, respectively. It had left and right functional uterus, white color measured; 77mm and 75mm in length; 11mm and 10 mm in width, respectively. Keywords: Velvet belly lantern shark; Second record; Maturing, Syrian coast Introduction following the scales for viviparous Elasmobranchs proposed by The velvet belly Etmopterus spinax (Linnaeus, 1758) is a small- Anonymous [12]. sized deep-water squaliform. Although E. spinax is known to be more commonly caught in the western Mediterranean Basin [1,2]; mainly off the Tunisian and Sicilian coasts [3,4], the species is reported in both Mediterranean Basins in waters ranging between 150-200 m and 400 m, and probably deeper [5]. It has been recorded at depths as low as 2,200 m in the Ionian Sea [6]. The species is reported in the Aegean Sea [7], in Turkish waters [8], off the Egyptian coast [9], and in the Levant Basin [10,11].