Research Priorities for Diseases of the Blue Crab Callinectes Sapidus
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Protistology Mitochondrial Genomes of Amoebozoa
Protistology 13 (4), 179–191 (2019) Protistology Mitochondrial genomes of Amoebozoa Natalya Bondarenko1, Alexey Smirnov1, Elena Nassonova1,2, Anna Glotova1,2 and Anna Maria Fiore-Donno3 1 Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, 199034 Saint Petersburg, Russia 2 Laboratory of Cytology of Unicellular Organisms, Institute of Cytology RAS, 194064 Saint Petersburg, Russia 3 University of Cologne, Institute of Zoology, Terrestrial Ecology, 50674 Cologne, Germany | Submitted November 28, 2019 | Accepted December 10, 2019 | Summary In this mini-review, we summarize the current knowledge on mitochondrial genomes of Amoebozoa. Amoebozoa is a major, early-diverging lineage of eukaryotes, containing at least 2,400 species. At present, 32 mitochondrial genomes belonging to 18 amoebozoan species are publicly available. A dearth of information is particularly obvious for two major amoebozoan clades, Variosea and Tubulinea, with just one mitochondrial genome sequenced for each. The main focus of this review is to summarize features such as mitochondrial gene content, mitochondrial genome size variation, and presence or absence of RNA editing, showing if they are unique or shared among amoebozoan lineages. In addition, we underline the potential of mitochondrial genomes for multigene phylogenetic reconstruction in Amoebozoa, where the relationships among lineages are not fully resolved yet. With the increasing application of next-generation sequencing techniques and reliable protocols, we advocate mitochondrial -
Barnegat Bay— Year 2
Plan 9: Research Barnegat Bay— Benthic Invertebrate Community Monitoring & Year 2 Indicator Development for the Barnegat Bay-Little Egg Harbor Estuary - Barnegat Bay Diatom Nutrient Inference Model Hard Clams as Indicators of Suspended Ecological Evaluation of Particulates in Barnegat Bay Sedge Island Marine Assessment of Fishes & Crabs Responses to Conservation Zone Human Alteration of Barnegat Bay Assessment of Stinging Sea Nettles (Jellyfishes) in Barnegat Bay Baseline Characterization Dr. Paul Jivoff, Rider University, Principal Investigator of Phytoplankton and Harmful Algal Blooms Project Manager: Joe Bilinski, Division of Science, Research and Environmental Health Baseline Characterization of Zooplankton in Barnegat Bay Thomas Belton, Barnegat Bay Research Coordinator Dr. Gary Buchanan, Director—Division of Science, Research & Environmental Health Multi-Trophic Level Modeling of Barnegat Bob Martin, Commissioner, NJDEP Bay Chris Christie, Governor Tidal Freshwater & Salt Marsh Wetland Studies of Changing Ecological Function & Adaptation Strategies 29 August 2014 Final Report Project Title: Ecological Evaluation of Sedge Island Marine Conservation Area in Barnegat Bay Dr. Paul Jivoff, Rider University, Manager [email protected] Joseph Bilinski, NJDEP Project Manager [email protected] Tom Belton, NJDEP Research Coordinator [email protected] Marc Ferko, NJDEP Quality Assurance Officer [email protected] Acknowledgements I would like to thank the Rutgers University Marine Field Station for providing equipment, facilities and logistical support that were vital to completing this project. I also thank Rider University students (Jade Kels, Julie McCarthy, Laura Moritzen, Amanda Young, Frank Pandolfo, Amber Barton, Pilar Ferdinando and Chelsea Tighe) who provided critical assistance in the field and laboratory. The Sedge Island Natural Resource Education Center provided key logistical support for this project. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Host-Parasite Interaction of Atlantic Salmon (Salmo Salar) and the Ectoparasite Neoparamoeba Perurans in Amoebic Gill Disease
ORIGINAL RESEARCH published: 31 May 2021 doi: 10.3389/fimmu.2021.672700 Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease † Natasha A. Botwright 1*, Amin R. Mohamed 1 , Joel Slinger 2, Paula C. Lima 1 and James W. Wynne 3 1 Livestock and Aquaculture, CSIRO Agriculture and Food, St Lucia, QLD, Australia, 2 Livestock and Aquaculture, CSIRO Agriculture and Food, Woorim, QLD, Australia, 3 Livestock and Aquaculture, CSIRO Agriculture and Food, Hobart, TAS, Australia Marine farmed Atlantic salmon (Salmo salar) are susceptible to recurrent amoebic gill disease Edited by: (AGD) caused by the ectoparasite Neoparamoeba perurans over the growout production Samuel A. M. Martin, University of Aberdeen, cycle. The parasite elicits a highly localized response within the gill epithelium resulting in United Kingdom multifocal mucoid patches at the site of parasite attachment. This host-parasite response Reviewed by: drives a complex immune reaction, which remains poorly understood. To generate a model Diego Robledo, for host-parasite interaction during pathogenesis of AGD in Atlantic salmon the local (gill) and University of Edinburgh, United Kingdom systemic transcriptomic response in the host, and the parasite during AGD pathogenesis was Maria K. Dahle, explored. A dual RNA-seq approach together with differential gene expression and system- Norwegian Veterinary Institute (NVI), Norway wide statistical analyses of gene and transcription factor networks was employed. A multi- *Correspondence: tissue transcriptomic data set was generated from the gill (including both lesioned and non- Natasha A. Botwright lesioned tissue), head kidney and spleen tissues naïve and AGD-affected Atlantic salmon [email protected] sourced from an in vivo AGD challenge trial. -
Paramoeba Pemaquidensis (Sarcomastigophora: Paramoebidae) Infestation of the Gills of Coho Salmon Oncorhynchus Kisutch Reared in Sea Water
Vol. 5: 163-169, 1988 DISEASES OF AQUATIC ORGANISMS Published December 2 Dis. aquat. Org. Paramoeba pemaquidensis (Sarcomastigophora: Paramoebidae) infestation of the gills of coho salmon Oncorhynchus kisutch reared in sea water Michael L. ~ent'l*,T. K. Sawyer2,R. P. ~edrick~ 'Battelle Marine Research Laboratory, 439 West Sequim Bay Rd, Sequim, Washington 98382, USA '~esconAssociates, Inc., Box 206, Turtle Cove, Royal Oak, Maryland 21662, USA 3~epartmentof Medicine, School of Veterinary Medicine, University of California, Davis, California 95616, USA ABSTRACT: Gill disease associated with Paramoeba pemaquidensis Page 1970 (Sarcomastigophora: Paramoebidae) infestations was observed in coho salmon Oncorhynchus lasutch reared in sea water Fish reared in net pens in Washington and in land-based tanks in California were affected. Approxi- mately 25 O/O mortality was observed in the net pens in 1985, and the disease recurred in 1986 and 1987. Amoeba infesting the gill surfaces elicited prominent epithelia1 hyperplasia. Typical of Paramoeba spp., the parasite had a Feulgen positive parasome (Nebenkorper) adjacent to the nucleus and floatlng and transitional forms had digitiform pseudopodia. We have established cultures of the organism from coho gills; it grows rapidly on Malt-yeast extract sea water medium supplemented with Klebsiella bacteria. Ultrastructural characteristics and nuclear, parasome and overall size of the organism in study indicated it is most closely related to the free-living paramoeba P. pemaquidensis. The plasmalemma of the amoeba from coho gills has surface filaments. Measurements (in pm) of the amoeba under various conditions are as follows: transitional forms directly from gills 28 (24 to 30),locomotive forms from liquid culture 21 X 17 (15 to 35 X 11 to 25), and locomotive forms from agar culture 25 X 20 (15 to 38 X 15 to 25). -
Dieta Natural Do Siri-Azul Callinectes Sapidus (Decapoda, Portunidae) Na Região
Dieta natural do siri-azul Callinectes sapidus (Decapoda, Portunidae) na região... 305 Dieta natural do siri-azul Callinectes sapidus (Decapoda, Portunidae) na região estuarina da Lagoa dos Patos, Rio Grande, Rio Grande do Sul, Brasil Alexandre Oliveira, Taciana K. Pinto, Débora P. D. Santos & Fernando D’Incao Fundação Universidade Federal do Rio Grande, Caixa Postal 474, 96201-900 Rio Grande, RS, Brasil. ([email protected], [email protected], [email protected], [email protected]) ABSTRACT. Natural diet of the blue crab Callinectes sapidus (Decapoda, Portunidae) in the Patos Lagoon estuary area, Rio Grande, Rio Grande do Sul, Brazil. The Southern Brazil blue crab Callinectes sapidus Rathbun, 1869 is the most abundant crab of the genus Callinectes in Patos Lagoon estuary. Although this species is widely distributed throughout the Patos Lagoon estuary area, there is little information about its natural diet. This species is an important predator and has a significant influence on its prey populations. The aim of this study was to check the natural diet of blue crab through the foregut contents analysis. Crabs were collected using an otter trawl net from March 2003 to March 2004. After collected, crabs were preserved immediately in 10% formaldehyde. The carapace width, weight and sex were measured for each individual. The foregut of each crab was removed and stored in 70% ethanol. Blue crab feeds on a wide variety of sessile and slow moving invertebrates. The main item was Detritus, followed by the suspension-feeder mollusk Erodona mactroides Bosc, 1802 (Erodonidae). Sand grains and the small crustaceans of class Ostracoda, were an important component of the foregut contents, but sand grains were not considered food. -
Diet, Feeding Habits, and Predator Size/Prey Size Relationships of Red Drum (Sciaenops Ocellatus) in Galveston Bay, Texas
Diet, Feeding Habits, and Predator Size/Prey Size Relationships of Red Drum (Sciaenops ocellatus) in Galveston Bay, Texas 233 Kurtis K. Schlicht Conservation Scientist II Texas Parks and Wildlife, Coastal Fisheries Division Seabrook Marine Laboratory B.S. Degree in Biology from Texas Tech University, Lubbock, Texas. Previous work includes Biologist Assistant for six years with Houston Lighting and Power's Environmental Division. Currently working as a Conservation Scientist II in the Coastal Fisheries Division of the Texas Parks and Wildlife, Seabrook Marine Laboratory. (281) 474-2811. 234 Feeding Habits of Red Drum (Sciaenops ocellatus) in Galveston Bay, Texas: Seasonal Diet Variation and Predator-Prey Size Relationships Frederick S. Scharf and Kurtis K. Schlicht Texas Parks and Wildlife, Coastal Fisheries Division, Seabrook Marine Laboratory, P.O. Box 8, Seabrook, TX 77586 Introduction The effect of predaceous fishes on the composition of aquatic ecosystems can be significant. Mortality induced by predation can reduce prey abundances locally and may limit prey recruitment in some systems. In order to begin to quantify the potential effects offish predation on community structure and prey populations, detailed information is needed on the feeding habits of important predators. The red drum (Sciaenops ocellatus) is an abundant estuarine-dependent fish that is widely distributed throughout the Gulf of Mexico. Adults spawn in near shore Gulf waters close to the mouths of passes and inlets during late summer and early fall. Larvae are transported through passes into estuaries via tidal currents, where they settle in shallow nursery areas and remain through the juvenile stage. Although older red drum may migrate to offshore waters during fall and winter, fish at least as old as age four commonly occur in Gulf of Mexico estuaries. -
Physiological and Biochemical Responses to Hypoxia in the Blue Crab, Callinectes Sapidus Rathbun, the Lesser Blue Crab, Callinec
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1993 Physiological and Biochemical Responses to Hypoxia in the Blue Crab, Callinectes Sapidus Rathbun, the Lesser Blue Crab, Callinectes Similis Williams, and the Southern Oyster Drill, Stramonita Haemastoma Linnaeus. Tapash Das Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Das, Tapash, "Physiological and Biochemical Responses to Hypoxia in the Blue Crab, Callinectes Sapidus Rathbun, the Lesser Blue Crab, Callinectes Similis Williams, and the Southern Oyster Drill, Stramonita Haemastoma Linnaeus." (1993). LSU Historical Dissertations and Theses. 5625. https://digitalcommons.lsu.edu/gradschool_disstheses/5625 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
A Review of the Impact of Diseases on Crab and Lobster Fisheries
A Review Of The Impact Of Diseases On Crab And Lobster Fisheries Jeffrey D. Shields Virginia Institute of Marine Science, The College of William and Mary, Gloucester Point, VA 23062 Abstract Diseases are a natural component of crustacean populations. Background levels of various agents are expected in fished populations, and there is good reason to establish baseline levels of pathogens in exploited fisheries before they become a problem. Such baselines are often difficult to fund or publish; nonetheless, outbreaks are an integral feature of heavily exploited populations. Mortalities or other problems can arise when an outbreak occurs, and all too often the underlying causes of an outbreak are poorly understood. A variety of stressors can lead to outbreaks of disease or contribute to their severity. Pollution, poor water quality, hypoxia, temperature extremes, overexploitation have all been implicated in various outbreaks. This review focuses on epidemic diseases of commercially important crabs and lobsters as well as a few examples of other disease issues in crustaceans that are ecologically important, but not of commercial significance. Key words: pathogens, crustaceans, mortality, Carcinonemertes, PaV1, overfishing, Rhizo- cephala, Paramoeba Introduction Pathogens cause direct and indirect losses to fish were thought to contain presumptive crustacean fisheries. Direct losses are obvi- toxins (Magnien 2001). At the time, the ous, resulting in morbidity or mortality to scare threatened the commercial fishing in- the fished species, but they can be difficult dustry of Chesapeake Bay because consum- to assess. However, mortality events can be ers did not purchase fish from the region. widespread and can even damage the socio- economics of impacted fishing communities, Direct losses are most visible to the fishery such as the lobster mortality event in Long because the outcome is usually morbidity or Island Sound during 1999 (Pearce and mortality to the targeted component of the Balcom 2005). -
Shrimps, Lobsters, and Crabs of the Atlantic Coast of the Eastern United States, Maine to Florida
SHRIMPS, LOBSTERS, AND CRABS OF THE ATLANTIC COAST OF THE EASTERN UNITED STATES, MAINE TO FLORIDA AUSTIN B.WILLIAMS SMITHSONIAN INSTITUTION PRESS Washington, D.C. 1984 © 1984 Smithsonian Institution. All rights reserved. Printed in the United States Library of Congress Cataloging in Publication Data Williams, Austin B. Shrimps, lobsters, and crabs of the Atlantic coast of the Eastern United States, Maine to Florida. Rev. ed. of: Marine decapod crustaceans of the Carolinas. 1965. Bibliography: p. Includes index. Supt. of Docs, no.: SI 18:2:SL8 1. Decapoda (Crustacea)—Atlantic Coast (U.S.) 2. Crustacea—Atlantic Coast (U.S.) I. Title. QL444.M33W54 1984 595.3'840974 83-600095 ISBN 0-87474-960-3 Editor: Donald C. Fisher Contents Introduction 1 History 1 Classification 2 Zoogeographic Considerations 3 Species Accounts 5 Materials Studied 8 Measurements 8 Glossary 8 Systematic and Ecological Discussion 12 Order Decapoda , 12 Key to Suborders, Infraorders, Sections, Superfamilies and Families 13 Suborder Dendrobranchiata 17 Infraorder Penaeidea 17 Superfamily Penaeoidea 17 Family Solenoceridae 17 Genus Mesopenaeiis 18 Solenocera 19 Family Penaeidae 22 Genus Penaeus 22 Metapenaeopsis 36 Parapenaeus 37 Trachypenaeus 38 Xiphopenaeus 41 Family Sicyoniidae 42 Genus Sicyonia 43 Superfamily Sergestoidea 50 Family Sergestidae 50 Genus Acetes 50 Family Luciferidae 52 Genus Lucifer 52 Suborder Pleocyemata 54 Infraorder Stenopodidea 54 Family Stenopodidae 54 Genus Stenopus 54 Infraorder Caridea 57 Superfamily Pasiphaeoidea 57 Family Pasiphaeidae 57 Genus -
Molecular Characterisation of Neoparamoeba Strains Isolated from Gills of Scophthalmus Maximus
DISEASES OF AQUATIC ORGANISMS Vol. 55: 11–16, 2003 Published June 20 Dis Aquat Org Molecular characterisation of Neoparamoeba strains isolated from gills of Scophthalmus maximus Ivan Fiala1, 2, Iva Dyková1, 2,* 1Institute of Parasitology, Academy of Sciences of the Czech Republic and 2Faculty of Biological Sciences, University of South Bohemia, Brani$ovská 31, 370 05 >eské Budeˇ jovice, Czech Republic ABSTRACT: Small subunit ribosomal RNA gene sequences were determined for 5 amoeba strains of the genus Neoparamoeba Page, 1987 that were isolated from gills of Scophthalmus maximus (Lin- naeus, 1758). Phylogenetic analyses revealed that 2 of 5 morphologically indistinguishable strains clustered with 6 strains identified previously as N. pemaquidensis (Page, 1970). Three strains branched as a clade separated from N. pemaquidenis and N. aestuarina (Page, 1970) clades. Our analyses suggest that these 3 strains could be representatives of an independent species. In a more comprehensive eukaryotic tree, strains belonging to Neoparamoeba spp. formed a monophyletic group with a sister-group relationship to Vannella anglica Page, 1980. They did not cluster with Gymnamoebae of the families Hartmannellidae, Flabellulidae, Leptomyxidae or Amoebidae presently available in GenBank. KEY WORDS: Paramoeba · Neoparamoeba · SSU rDNA · Phylogenetic position Resale or republication not permitted without written consent of the publisher INTRODUCTION Sequences of the SSU rRNA gene were made accessi- ble in GenBank in May 2002. Amoebic gill disease (AGD), repeatedly declared As a first step, aimed at unravelling the biology and one of the most serious diseases affecting farmed taxonomy of the agent of AGD in turbot Scophthalmus salmonids Salmo salar Linnaeus, 1758 and Oncorhyn- maximus, comparative light and transmission electron chus mykiss (Walbaum, 1792) in the last 2 decades microscopical studies of 6 Neoparamoeba strains indi- (Kent et al.