Chemical Constituents Analysis of Ethyl Acetate Extract from MSR-1707 by GC-MS
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Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Chaenotheca Chrysocephala Species Fact Sheet
SPECIES FACT SHEET Common Name: yellow-headed pin lichen Scientific Name: Chaenotheca chrysocephala (Turner ex Ach.) Th. Fr. Division: Ascomycota Class: Sordariomycetes Order: Trichosphaeriales Family: Coniocybaceae Technical Description: Crustose lichen. Photosynthetic partner Trebouxia. Thallus visible on substrate, made of fine grains or small lumps or continuous, greenish yellow. Sometimes thallus completely immersed and not visible on substrate. Spore-producing structure (apothecium) pin- like, comprised of a obovoid to broadly obconical head (capitulum) 0.2-0.3 mm diameter on a slender stalk, the stalk 0.6-1.3 mm tall and 0.04 -0.8 mm diameter; black or brownish black or brown with dense yellow colored powder on the upper part. Capitulum with fine chartreuse- yellow colored powder (pruina) on the under side. Upper side with a mass of powdery brown spores (mazaedium). Spore sacs (asci) cylindrical, 14-19 x 2.0-3.5 µm and disintegrating; spores arranged in one line in the asci (uniseriate), 1-celled, 6-9 x 4-5 µm, short ellipsoidal to globose with rough ornamentation of irregular cracks. Chemistry: all spot tests negative. Thallus and powder on stalk (pruina) contain vulpinic acid, which gives them the chartreuse-yellow color. This acid also colors Letharia spp., the wolf lichens. Other descriptions and illustrations: Nordic Lichen Flora 1999, Peterson (no date), Sharnoff (no date), Stridvall (no date), Tibell 1975. Distinctive Characters: (1) bright chartreuse-yellow thallus with yellow pruina under capitulum and on the upper part of the stalk, (2) spore mass brown, (3) spores unicellular (4) thallus of small yellow lumps. Similar species: Many other pin lichens look similar to Chaenotheca chrysocephala. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
11-31 Strandzha.Indd
MYCOLOGIA BALCANICA 8: 157–160 (2011) 157 New records of microfungal genera from Mt. Strandzha in Bulgaria (south-eastern Europe). II Elşad Hüseyin ¹*, Faruk Selçuk ¹ & Ali S. Bülbül ² ¹ Ahi Evran University, Arts and Sciences Faculty, Department of Biology, Kırşehir, Turkey ² Gazi University Sciences Faculty, Department of Biology, Ankara, Turkey Received 1 September 2011 / Accepted 1 December 2011 Abstract. Twenty species of ascomycetous and anamorphic fungi from twenty genera are reported for the first time from Mt. Strandzha in Bulgaria. Key words: Pezizomycotina, anamorphic fungi, Bulgaria, fungal diversity, Mt. Strandzha Introduction Index Fungorum (www.indexfungorum.org, accessed 2011). Host plants were identified using the Flora of Turkey and In 2005 during fi eld investigations in Mt. Strandzha in East Aegean Islands (Davis 1965–1985). Taxa, its families Bulgaria twenty genera that included twenty species of and author citations were listed according to Cannon & non-lichenized Pezizomycotina and anamorphic fungi were Kirk (2007), Kirk et al. (2008), and Index Fungorum (www. collected and identifi ed. Th ese collections are reported herein. indexfungorum.org, accessed 2011). Families and species All genera of these fungi are new records for the mycobiota of names are listed in alphabetical order in text. All specimens Bulgaria. are deposited at the Mycological Collection of the Arts and Sciences Faculty of Ahi Evran University (AhEUM), Kırşehir, Turkey. Materials and methods Abbrevation: EH: Collection number of Elşad Hüseyin. Specimens of the fungi were taken to the laboratory and examined under a Leica DM-E compound microscope. List of specimens Sections were hand cut using a razor blade. Th e fungi were identified using the relevant literature (Popushoy 1971; Boliniales Shvartsman at al. -
Collecting and Recording Fungi
British Mycological Society Recording Network Guidance Notes COLLECTING AND RECORDING FUNGI A revision of the Guide to Recording Fungi previously issued (1994) in the BMS Guides for the Amateur Mycologist series. Edited by Richard Iliffe June 2004 (updated August 2006) © British Mycological Society 2006 Table of contents Foreword 2 Introduction 3 Recording 4 Collecting fungi 4 Access to foray sites and the country code 5 Spore prints 6 Field books 7 Index cards 7 Computers 8 Foray Record Sheets 9 Literature for the identification of fungi 9 Help with identification 9 Drying specimens for a herbarium 10 Taxonomy and nomenclature 12 Recent changes in plant taxonomy 12 Recent changes in fungal taxonomy 13 Orders of fungi 14 Nomenclature 15 Synonymy 16 Morph 16 The spore stages of rust fungi 17 A brief history of fungus recording 19 The BMS Fungal Records Database (BMSFRD) 20 Field definitions 20 Entering records in BMSFRD format 22 Locality 22 Associated organism, substrate and ecosystem 22 Ecosystem descriptors 23 Recommended terms for the substrate field 23 Fungi on dung 24 Examples of database field entries 24 Doubtful identifications 25 MycoRec 25 Recording using other programs 25 Manuscript or typescript records 26 Sending records electronically 26 Saving and back-up 27 Viruses 28 Making data available - Intellectual property rights 28 APPENDICES 1 Other relevant publications 30 2 BMS foray record sheet 31 3 NCC ecosystem codes 32 4 Table of orders of fungi 34 5 Herbaria in UK and Europe 35 6 Help with identification 36 7 Useful contacts 39 8 List of Fungus Recording Groups 40 9 BMS Keys – list of contents 42 10 The BMS website 43 11 Copyright licence form 45 12 Guidelines for field mycologists: the practical interpretation of Section 21 of the Drugs Act 2005 46 1 Foreword In June 2000 the British Mycological Society Recording Network (BMSRN), as it is now known, held its Annual Group Leaders’ Meeting at Littledean, Gloucestershire. -
Annals of the Romanian Society for Cell Biology
Annals of R.S.C.B., ISSN:1583-6258, Vol. 25, Issue 4, 2021, Pages. 2239 – 2257 Received 05 March 2021; Accepted 01 April 2021. Morphological and Molecular Characterization of Endophytic Fungi isolated from the leaves of Bergenia ciliata Jiwan Raj Prasai1 S. Sureshkumar1, P. Rajapriya2 C. Gopi3 and M. Pandi1* 1Department of Molecular Microbiology, School of Biotechnology, Madurai Kamaraj University, Madurai – 625021, Tamil Nadu, India. 2Department of Zoology, M.S.S. Wakf Board College, Madurai – 625020, Tamil Nadu, India. 3Department of Botany, C.P.A College, Bodi – 625513. Tamil Nadu, India. *Corresponding Author. Email- [email protected] Abstract Endophytic fungi are microorganisms that are present inside the healthy tissue of living plants. Endophytes existence inside the plants tissue enhances the growth and development of the bio-active compounds which increase the quality and quantity of crude drugs. The endophytic fungal assemblages from the medicinal plants are limited around the world. The present study was conducted for the morphological and molecular identification of the endophytic fungi isolated from medicinal plant leaves Bergenia ciliata collected from different mountain areas of Sikkim, India. In this study total of 130 leaves segment was selected for fungal isolation from which 75 fungal colonies were recovered among them 25 different endophytes were isolated and characterized based on the morphological appearance and colony characters. Further all 25 fungi were identified molecular level through Internal Transcribed Spacer (ITS) and ITS2 sequence-secondary structure based analysis. On the basis of morphological and molecular characterization the isolated fungi were belonging to 6 orders i.e. Glomerellales, Trichosphaeriales, Diaporthales, Xylariales, Botryosphaeriales, Pleorotales and 9 genera i.e. -
Original Research Article
Original Research Article Chemical Constituents Analysis of Ethyl Acetate Extract from MSR-1707 by GC-MS Abstract Aims: To analyze the chemical constituents of ethyl acetate extract from MSR-1707 to promote the rational utilization of the mushroom resources. Methodology: MSR-1707 belongs to the genus Nigrospora sp. It was extracted by ethyl acetate, then the extract was analyzed by Gas Chromatography-Mass Spectrometer (GC-MS). Identification of compounds was achieved according to their GC retention indices (RI) and database search using the library of NIST05, as well as a comparison of the fragmentation pattern of the mass spectra with data published in the literature. Results: Seventy-three compounds were separated by gas chromatography. Based on the NIST05 spectral library and corresponding literature information, fifty-three compounds were identified. Their relative percentage of contents accounted for 95.62% of the outflow peak. Some of the identified peaks are 9-Octadecenoic acid, methyl ester(E)(18.50%) , 9-Tricosene(Z)(8.30%), 13-Docosenamide(E) (5.26%), and Myristic acid glycidyl ester (3.11%). Conclusion: This is the first report of chemical constituents of the ethyl acetate extract of Nigrospora sp. using GC-MS, which offer some theoretical basis for the further exploration and application of this mushroom. Keywords: Nigrospora sp.; ethyl acetate extracts; GC-MS; chemical constituents; 1. INTRODUCTION In recent years, Fungi have been a research hotspot as they can produce a variety of active substances with potential medicinal and agricultural applications [1, 2, 21]. According to the statistical data, there are about 1.5 million species of fungi that exist in the world [22], and there is still a sea of species waiting to be researched and discovered [3]. -
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Mechanisms of Invasion and the Microbiome of Introduced Species A Dissertation SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Aaron S. David IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Eric Seabloom Georgiana May May 2016 © Aaron S. David 2016 Acknowledgements I have been fortunate to have had incredible guidance, mentorship, and assistance throughout my time as a Ph.D. student at the University of Minnesota. I would like to start by acknowledging and thanking my advisors, Dr. Eric Seabloom and Dr. Georgiana May for providing crucial support, and always engaging me in stimulating discussion. I also thank my committee members, Dr. Peter Kennedy, Dr. Linda Kinkel, and Dr. David Tilman for their guidance and expertise. I am indebted to Dr. Sally Hacker and Dr. Joey Spatafora of Oregon State University for generously welcoming me into their laboratories while I conducted my field work. Dr. Phoebe Zarnetske and Shawn Gerrity showed me the ropes out on the dunes and provided valuable insight along the way. I also have to thank the many undergraduate students who helped me in the field in laboratory. In particular, I need to thank Derek Schmidt, who traveled to Oregon with me and helped make my field work successful. I also thank my other collaborators that made this work possible, especially Dr. Peter Ruggiero and Reuben Biel who contributed to the data collection and analysis in Chapter 1, and Dr. Gina Quiram and Jennie Sirota who contributed to the study design and data collection in Chapter 4. I would also like to thank the amazing faculty, staff, and students of Ecology, Evolution, and Behavior and neighboring departments. -
Antimicrobial and Antioxidant Activities of Endophytic Fungi Extracts Isolated from Carissa Carandas
Vol. 13(27), pp. 464-473, September, 2019 DOI: 10.5897/AJMR2019.9164 Article Number: 2CC499E61808 ISSN: 1996-0808 Copyright ©2019 Author(s) retain the copyright of this article African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Antimicrobial and antioxidant activities of endophytic fungi extracts isolated from Carissa carandas Preuttiporn Supaphon1* and Sita Preedanon2 1Department of Biology, Faculty of Science, Thaksin University, Papayom, Phatthalung, 93210 Thailand. 2National Center for Genetic Engineering and Biotechnology (BIOTEC), Thailand Science Park, Phaholyothin Road, Klong 1, Klong Luang, Pathumthani, 12120 Thailand. Received 2 July, 2019; Accepted 22 August, 2019. This is the first report of endophytic fungi derived from Carissa carandas producing bioactive compounds in Thailand. The aims of this research were to evaluate the antimicrobial and antioxidant activities of extracts from endophytic fungi, identify the potential fungal isolates by phylogenetic analysis and analyze the composition of the potential crude extract by gas chromatography-mass spectrometry (GC-MS). The endophytic fungus Nigrospora guilinensis TSU-EFHA009 produced the most active extracts. Broth ethyl acetate extract (BE) had the strongest activity against Cryptococcus neoformans at a minimum inhibitory concentration (MIC) of 4 µg/mL and a minimum fungicidal concentration of 8 µg/mL. Moreover, the antimicrobial activity was confirmed using scanning electron microscopy. The target cells were morphologically damaged. In addition, this active extract had the highest antioxidant activity with an inhibitory concentration (IC50) value of 0.03 mg/mL. The total phenolic content of the target extract was detected by using the colorimetric method. This extract contained a total phenolic content of 41.20±0.40 mg GAE/g of the extract. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Molecular Systematics of the Sordariales: the Order and the Family Lasiosphaeriaceae Redefined
Mycologia, 96(2), 2004, pp. 368±387. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae rede®ned Sabine M. Huhndorf1 other families outside the Sordariales and 22 addi- Botany Department, The Field Museum, 1400 S. Lake tional genera with differing morphologies subse- Shore Drive, Chicago, Illinois 60605-2496 quently are transferred out of the order. Two new Andrew N. Miller orders, Coniochaetales and Chaetosphaeriales, are recognized for the families Coniochaetaceae and Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 Chaetosphaeriaceae respectively. The Boliniaceae is University of Illinois at Chicago, Department of accepted in the Boliniales, and the Nitschkiaceae is Biological Sciences, Chicago, Illinois 60607-7060 accepted in the Coronophorales. Annulatascaceae and Cephalothecaceae are placed in Sordariomyce- Fernando A. FernaÂndez tidae inc. sed., and Batistiaceae is placed in the Euas- Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 comycetes inc. sed. Key words: Annulatascaceae, Batistiaceae, Bolini- aceae, Catabotrydaceae, Cephalothecaceae, Ceratos- Abstract: The Sordariales is a taxonomically diverse tomataceae, Chaetomiaceae, Coniochaetaceae, Hel- group that has contained from seven to 14 families minthosphaeriaceae, LSU nrDNA, Nitschkiaceae, in recent years. The largest family is the Lasiosphaer- Sordariaceae iaceae, which has contained between 33 and 53 gen- era, depending on the chosen classi®cation. To de- termine the af®nities and taxonomic placement of INTRODUCTION the Lasiosphaeriaceae and other families in the Sor- The Sordariales is one of the most taxonomically di- dariales, taxa representing every family in the Sor- verse groups within the Class Sordariomycetes (Phy- dariales and most of the genera in the Lasiosphaeri- lum Ascomycota, Subphylum Pezizomycotina, ®de aceae were targeted for phylogenetic analysis using Eriksson et al 2001).