Mesocosm Studies: Polycyclic Aromatic Hydrocarbons (Pahs)

Total Page:16

File Type:pdf, Size:1020Kb

Mesocosm Studies: Polycyclic Aromatic Hydrocarbons (Pahs) MESOCOSM STUDIES: POLYCYCLIC AROMATIC HYDROCARBONS (PAHS) EXPOSURE, CONCENTRATIONS AND REMOVAL RATES A Dissertation by DAWEI SHI Submitted to the Office of Graduate and Professional Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Chair of Committee, Terry L. Wade Committee Members, Piers Chapman Gerardo Gold Bouchot Andrew G. Klein Head of Department, Shari Yvon-Lewis August 2019 Major subject: Oceanography Copyright 2019 Dawei Shi ABSTRACT Polycyclic Aromatic Hydrocarbons (PAHs) are toxic constituents found in crude oils, which can be removed from the water column through a combination of processes: evaporation, sedimentation, photo-oxidation and/or biodegradation, collectively termed weathering. Marine snow consists of many particles including bacteria, phytoplankton, mineral particles, fecal pellets and aggregates and plays an important role in the process of removing PAHs from the water column through sedimentation and enhanced biodegradation. The microbial community produces exopolymeric substances (EPS) in response to stresses including exposure to petroleum may lead to excess production of marine snow, therefore affecting the biodegredation and transport and fate of PAHs. This research hypothesizes that the PAH removal from the water column is enhanced by microbial activity in the presence of petroleum and petroleum plus Corexit. In this study, mesocosm experiments were used to investigate PAH half- lives when petroleum and dispersants are present. The first four mesocosm experiments were undertaken with water collected from near shore or off-shore locations in the Gulf of Mexico. As part of these studies, oil and oil plus dispersant mixtures known as WAF (water accommodated oil fraction) and CEWAF (chemically enhanced water accommodated fraction) were generated ii in 130 L baffled recirculation tanks, and ~80 L transferred to the mesocosms. A 1:10 dilution of the CEWAF (DCEWAF) was an additional mesocosm treatment. Control treatments with no oil or dispersant were used for comparison. Concentrated phytoplankton collected from Galveston Bay were added to all mesocosm tanks. In mesocosm 3 (M3) and 4 (M4) f/20 nutrient additions were made. Total scanning fluorescence (TSF) analysis was performed to determine estimate oil equivalents (EOE) concentrations at the start, during and at the end of the experiment. PAH composition and concentration were determined using Gas Chromatography/Mass Spectroscopy (GC/MS). The concentrations of EOE and PAH as well as changes in the PAH composition of the WAF, DCEWAF and CEWAF over time were determined. Biomarker data were measured in selected samples in order to investigate the biodegradation process. The mesocosm experiments were designed to: 1) simulate the conditions of DWH oil spill using WAF, DCEWAF and CEWAF generated from a baffled recirculating system; 2) establish a relationship between EOE measured by TSF that allows for real time oil concentration estimates in mesocosm experiments; 3) compare PAH removal pattern under different biological conditions and 4) examine the impact of Corexit addition in the removal half-lives of PAH, providing additional information for evaluation of future usage of Corexit during marine oil spills. iii ACKNOWLEDGEMENTS Firstly, I would like to express my sincere gratitude to my advisor Dr. Terry L. Wade for the continuous support of my Ph.D. study and related research, for his patience, motivation, and immense knowledge. He guided me consistently through the research and writing of this dissertation. I would also like to thank the rest of my dissertation committee: Drs. Piers Chapman, Gerardo Gold Bouchot and Andrew Klein, for their insightful comments and their constant guidance and support through the course of this research at Texas A&M University. I am also pleased to say thanks to Dr. Antonietta Quigg and all the ADDOMEx members for making this happen. Special thanks to Steve Sweet, Blake Mackay and Ibrahim Al Atwah for their help in the laboratory work. Finally, I am grateful to my parents, for their unconditional love and support. Thanks to my wife, Fei, for being my eternal source of inspiration. iv CONTRIBUTORS AND FUNDING SOURCES Contributors This work was supported by my committee chair, Dr. Terry L. Wade and my committee members, Drs. Piers Chapman, Gerardo Gold Bouchot from Department of Oceanography and Dr. Andrew Klein from Department of Geography. Instrumental Analysis was done with the help of Steve Sweet, Blake Mackay and Ibrahim Al Atwah. All other work conducted for the dissertation was completed by the student independently. Funding Sources This research was made possible by a grant from The Gulf of Mexico Research Initiative to support consortium research entitled ADDOMEx (Aggregation and Degradation of Dispersants and Oil by Microbial Exopolymers) Consortium. Data is publicly available through the Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) at http://data.gulfresearchinitiative.org (doi:10.7266/N7XG9P60, doi: 10.7266/N71G0JX8, doi: 10.7266/n7-hs2n-xf29). v NOMENCLATURE ADDOMEx Aggregation and Degradation of Dispersants and Oil by Microbial Exopolymers AF Amplification Factor BRT Baffled Recirculation Tanks CEWAF Chemically Enhanced Water Accommodated oil Fraction CROSERF Chemical Response to Oil Spills Ecological Effects Research Forum DBTs Dibenzothiophenes DCEWAF Diluted Chemically Enhanced Water Accommodated oil Fraction DCM Dichloromethane DWH Deepwater Horizon EOE Estimated Oil Equivalent EPS Exopolymeric Substances GC/FID Gas Chromatography/Flame Ionization Detector GC-MS Gas Chromatography coupled with Mass Spectrometry GERG Geochemical and Environmental Research Group HMW High Molecular Weight hydrocarbons LMW Low Molecular Weight hydrocarbons M1 Mesocosm 1 M2 Mesocosm 2 vi M3 Mesocosm 3 M4 Mesocosm 4 M5 Mesocosm 5 MOS Marine Oil Snow NOAA National Oceanic and Atmospheric Administration PAH Polycyclic Aromatic Hydrocarbons PHENs Phenanthrenes ppm parts per million rpm revolutions per minute UCM Unresolved Complex Mixtures WAF Water Accommodated oil Fraction TPH total petroleum hydrocarbons TR total resolved peaks vii TABLE OF CONTENTS Page ABSTRACT ................................................................................................................ ii ACKNOWLEDGEMENTS .......................................................................................... iv CONTRIBUTORS AND FUNDING SOURCES ........................................................... v NOMENCLATURE .................................................................................................... vi TABLE OF CONTENTS .......................................................................................... viii LIST OF FIGURES ..................................................................................................... x LIST OF TABLES ...................................................................................................... xi INTRODUCTION ........................................................................................................ 1 LITERATURE REVIEW .............................................................................................. 5 PAHs ............................................................................................................ 5 Marine snow ................................................................................................. 9 Dispersants ................................................................................................. 12 QUESTIONS AND ASSOCIATED HYPOTHESIS .................................................... 16 METHODS ............................................................................................................... 18 Baffled recirculation system ........................................................................ 19 WAF and CEWAF generation ..................................................................... 20 Mesocosm experiments – M1 & M2 ............................................................ 22 Mesocosm experiments – M3 & M4 ............................................................ 25 Mesocosm experiments – M5 ..................................................................... 27 Estimated oil equivalents (EOE) ................................................................. 27 Hydrocarbons analysis ............................................................................... 28 RESULTS AND DISCUSSION ....................................................................... 34 Estimated oil equivalents (EOE) ................................................................. 34 Aliphatic hydrocarbons ............................................................................... 38 viii PAHs .......................................................................................................... 42 Initial PAH concentrations ....................................................................... 45 Removal of PAHs in WAF, DCEWAF and CEWAF treatments ............... 50 Rates of removal ..................................................................................... 59 Ratio of C2-DBTs to C2-PHENs and C3-DBTs to C3-PHENs ................. 70 Biomarkers ................................................................................................. 72 CONCLUSIONS ............................................................................................. 80 REFERENCES .............................................................................................
Recommended publications
  • Chemical Dispersants and Their Role in Oil Spill
    THE SEA GRANT and GOMRI CHEMICAL DISPERSANTS AND THEIR PARTNERSHIP ROLE IN OIL SPILL RESPONSE The mission of Sea Grant is to enhance the practical use and Larissa J. Graham, Christine Hale, Emily Maung-Douglass, Stephen Sempier, conservation of coastal, marine LaDon Swann, and Monica Wilson and Great Lakes resources in order to create a sustainable economy and environment. Nearly two million gallons of dispersants were used at the water’s There are 33 university–based surface and a mile below the surface to combat oil during the Sea Grant programs throughout the coastal U.S. These programs Deepwater Horizon oil spill. Many Gulf Coast residents have questions are primarily supported by about why dispersants were used, how they were used, and what the National Oceanic and Atmospheric Administration impacts dispersants could have on people and the environment. and the states in which the programs are located. In the immediate aftermath of the Deepwater Horizon spill, BP committed $500 million over a 10–year period to create the Gulf of Mexico Research Institute, or GoMRI. It is an independent research program that studies the effect of hydrocarbon releases on the environment and public health, as well as develops improved spill mitigation, oil detection, characterization and remediation technologies. GoMRI is led by an independent and academic 20–member research board. The Sea Grant oil spill science outreach team identifies the best available science from The Deepwater Horizon site (NOAA photo) projects funded by GoMRI and others, and only shares peer- reviewed research results. On April 20, 2010, an explosion on million barrels (172 million gallons), were the Deepwater Horizon oil rig killed released into Gulf of Mexico waters.1,2,3,4,5 11 people.
    [Show full text]
  • Oil + Dispersant
    Effects of oil dispersants on the environmental fate, transport and distribution of spilled oil in marine ecosystems Don Zhao, Y. Gong, X. Zhao, J. Fu, Z. Cai, S.E. O’Reilly Environmental Engineering Program Department of Civil Engineering Auburn University, Auburn, AL 36849, USA Bureau of Ocean Energy Management Office of Environment, New Orleans, LA 70123, USA Outline • Roles of dispersants on sediment retention of oil compounds • Effects of dispersants on settling of suspended sediment particles and transport of oil compounds • Effects of dispersants and oil on formation of marine oil snow Part I. Effects of Oil Dispersants on Sediment Retention of Polycyclic Aromatic Hydrocarbons in the Gulf Coast Ecosystems Yanyan Gong1, Xiao Zhao1, S.E. O’Reilly2, Dongye Zhao1 1Environmental Engineering Program Department of Civil Engineering Auburn University, Auburn, AL 36849, USA 2Bureau of Ocean Energy Management Office of Environment, New Orleans, LA 70123, USA Gong et al. Environmental Pollution 185 (2014) 240-249 Application of Oil Dispersants • In the 2010 the DWH oil spill, BP applied ~2.1 MG of oil dispersants (Kujawinski et al., 2011) Corexit 9500A and Corexit 9527A • About 1.1 MG injected at the wellhead (pressure = 160 atm, temperature = 4 oC) (Thibodeaux et al., 2011) • Consequently, ~770,000 barrels (or ~16%) of the spilled oil were dispersed (Ramseur, 2010) Kujawinski, E.B. et al. (2011) Environ. Sci. Technol., 45, 1298-1306. Ramseur, J.L. (2010) www.crs.gov, R41531. Polycyclic Aromatic Hydrocarbons (PAHs) in Spilled Oil • A class of principal persistent oil components The Macondo well oil contained ~3.9% PAHs by weight, and ~21,000 tons of PAHs were released during the 2010 spill (Reddy et al., 2011) PAHs are toxic, mutagenic, carcinogenic and persistent • Elevated concentrations of PAHs were reported during the DWH oil spill (EPA, 2010) Naphthalene Phenanthrene Pyrene Chrysene Benzo(a)pyrene Reddy, C.M.
    [Show full text]
  • 29-3 John.Pdf
    OceTHE OFFICIALa MAGAZINEn ogOF THE OCEANOGRAPHYra SOCIETYphy CITATION John, V., C. Arnosti, J. Field, E. Kujawinski, and A. McCormick. 2016. The role of dispersants in oil spill remediation: Fundamental concepts, rationale for use, fate, and transport issues. Oceanography 29(3):108–117, http://dx.doi.org/10.5670/ oceanog.2016.75. DOI http://dx.doi.org/10.5670/oceanog.2016.75 COPYRIGHT This article has been published in Oceanography, Volume 29, Number 3, a quarterly journal of The Oceanography Society. Copyright 2016 by The Oceanography Society. All rights reserved. USAGE Permission is granted to copy this article for use in teaching and research. Republication, systematic reproduction, or collective redistribution of any portion of this article by photocopy machine, reposting, or other means is permitted only with the approval of The Oceanography Society. Send all correspondence to: [email protected] or The Oceanography Society, PO Box 1931, Rockville, MD 20849-1931, USA. DOWNLOADED FROM HTTP://TOS.ORG/OCEANOGRAPHY GoMRI: DEEPWATER HORIZON OIL SPILL AND ECOSYSTEM SCIENCE The Role of Dispersants in Oil Spill Remediation Fundamental Concepts, Rationale for Use, Fate, and Transport Issues By Vijay John, Carol Arnosti, Jennifer Field, Elizabeth Kujawinski, and Alon McCormick The crew of a Basler BT-67 fixed-wing aircraft releases oil dispersant over the Deepwater Horizon oil spill, offshore Louisiana. US Coast Guard photo by Petty Officer 3rd Class Stephen Lehmann 108 Oceanography | Vol.29, No.3 ABSTRACT. Offering a scientific perspective, this paper provides a rationale for the and their ecological impacts are found use of dispersants in oil spill remediation by discussing their formulations and modes both in earlier research, as summarized of action and connecting their physics and chemistry to a their environmental fates in a National Research Council (2005) and impacts.
    [Show full text]
  • The Use of Forensic Polycyclic Aromatic Hydrocarbon
    The use of Forensic Polycyclic Aromatic Hydrocarbon Signatures and Compound Ratio Analysis Techniques (CORAT) for the Source Characterisation of Petrogenic / Pyrogenic Environmental Releases Mr Ken Scally Master of Science (Research) Galway Mayo Institute of Technology (GMIT) Dr Myles Keogh Dr Gay Keaveney Submitted to the Higher Education and Training Declaration The contents of this thesis have not been submitted as an exercise for a degree at this or any other College or University. The contents are entirely my own work. The sample location is anonymous to provide confidentiality in this study. Permission is required from die author before a library can lend this thesis. ^ II jf \,fo°\ | 4 (A A.C-S Cf 1 Signed: ^ L t y / u 6 ~ > d - Ken Scally BSc (Hons), MICI, ISEF Dedication To Pauline and my Parents Table of Contents Table of Contents Page N um ber Declaration.................................................................................................................................................................. iii Dedication........................................................................................................................ ........................................ iv Table of Contents....................................................................................................................................................... v List o f Figures...........................................................................................................................................................
    [Show full text]
  • Persistence, Fate, and Effectiveness of Dispersants Used During The
    THE SEA GRANT and GOMRI PERSISTENCE, FATE, AND EFFECTIVENESS PARTNERSHIP OF DISPERSANTS USED DURING THE The mission of Sea Grant is to enhance the practical use and DEEPWATER HORIZON OIL SPILL conservation of coastal, marine Monica Wilson, Larissa Graham, Chris Hale, Emily Maung-Douglass, Stephen Sempier, and Great Lakes resources in and LaDon Swann order to create a sustainable economy and environment. There are 33 university–based The Deepwater Horizon (DWH) oil spill was the first spill that occurred Sea Grant programs throughout the coastal U.S. These programs in the deep ocean, nearly one mile below the ocean’s surface. The are primarily supported by large-scale applications of dispersants used at the surface and the National Oceanic and Atmospheric Administration wellhead during the Deepwater Horizon oil spill raised many questions and the states in which the and highlighted the importance of understanding their effects on the programs are located. marine environment. In the immediate aftermath of the Deepwater Horizon spill, BP committed $500 million over a 10–year period to create the Gulf of Mexico Research Initiative, or GoMRI. It is an independent research program that studies the effect of hydrocarbon releases on the environment and public health, as well as develops improved spill mitigation, oil detection, characterization and remediation technologies. GoMRI is led by an independent and academic 20–member research board. The Sea Grant oil spill science outreach team identifies the best available science from projects funded by GoMRI and others, and only shares peer- reviewed research results. Oiled waters in Orange Beach, Alabama. (NOAA photo) Emergency responders used a large (Figure 1).1,2 Before this event, scientists amount of dispersants during the 2010 did not know how effective dispersants DWH oil spill.
    [Show full text]
  • 5.1.2 Dioctyl Sodium Sulfosuccinate
    http://researchcommons.waikato.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. Development of a Method for Trace Analysis of Dioctyl Sodium Sulfosuccinate by Liquid Chromatography Mass Spectrometry and its Application to Samples from the MV Rena Incident A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science (Research) in Chemistry at The University of Waikato by Daniel Richard Bernstein The University of Waikato 2015 Abstract The grounding of the MV Rena off the coast of Tauranga, New Zealand in 2011 prompted the application of Corexit® oil spill dispersants in an attempt to mitigate the impact of the spilled oil to coastal ecosystems. A quantitative method was developed employing sonication assisted extraction from beach sand followed by sample clean up by solid phase extraction and analysis by liquid chromatography tandem mass spectrometry for the analysis of Corexit® component dioctyl sodium sulfosuccinate (DOSS) at trace levels.
    [Show full text]
  • UNIVERSITY of CALIFORNIA RIVERSIDE Investigation of The
    UNIVERSITY OF CALIFORNIA RIVERSIDE Investigation of the Composition and Preservation Potential of Precambrian Sedimentary Organic Matter and Lipid Biosignatures A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Geological Sciences by Kelden Pehr June 2020 Dissertation Committee: Dr. Gordon D. Love, Chairperson Dr. Andrey Bekker Dr. Marilyn Fogel Copyright by Kelden Pehr 2020 The Dissertation of Kelden Pehr is approved: Committee Chairperson University of California, Riverside ACKNOWLEDGMENTS This research was made possible through funding and support from the NASA Earth and Space Science Fellowship (17-PLANET17R-0019), the Earle C Anthony Award and the UCR Dissertation Year Fellowship. I am very grateful to my advisor Gordon Love, whose support and guidance has been invaluable over these past years. I would like to thank my qualifying exams and defense committee members as follows: Andrey Bekker for the many opportunities and great conversations; Marilyn Fogel for the encouragement and excellent discussions on all things biogeochemical; Mary Dorser for welcoming me as an honorary member of the Droser lab; and Francesca Hopkins for asking the big questions. Rose Bisquera, Carina Lee, Alex Zumberge, JP Duda, Adam Hoffman, Nathan Marshall, and Adriana Rizzo were all wonderful lab mentors and mates. Steven Bates and Laurie Graham provided much needed support in the dark hours of instrument failure. Aaron Martinez deserves a special shout out for the awesome adventures, fantastic food, and long hours of laughter. I have had the pleasure to work with an amazing cast of collaborators, without whom, this research presented here would not have been possible.
    [Show full text]
  • Deepwater Horizon and the Law of the Sea: Was the Cure Worse Than the Disease? Grant Wilson Lewis & Clark Law School, [email protected]
    Boston College Environmental Affairs Law Review Volume 41 | Issue 1 Article 3 1-30-2014 Deepwater Horizon and the Law of the Sea: Was the Cure Worse than the Disease? Grant Wilson Lewis & Clark Law School, [email protected] Follow this and additional works at: http://lawdigitalcommons.bc.edu/ealr Part of the Environmental Law Commons, International Law Commons, Law of the Sea Commons, and the Oil, Gas, and Mineral Law Commons Recommended Citation Grant Wilson, Deepwater Horizon and the Law of the Sea: Was the Cure Worse than the Disease?, 41 B.C. Envtl. Aff. L. Rev. 63 (2014), http://lawdigitalcommons.bc.edu/ealr/vol41/iss1/3 This Article is brought to you for free and open access by the Law Journals at Digital Commons @ Boston College Law School. It has been accepted for inclusion in Boston College Environmental Affairs Law Review by an authorized editor of Digital Commons @ Boston College Law School. For more information, please contact [email protected]. DEEPWATER HORIZON AND THE LAW OF THE SEA: WAS THE CURE WORSE THAN THE DISEASE? Grant Wilson* Abstract: The number 4.9 million is commonly known as the number of barrels of crude oil that entered the Gulf of Mexico during the Deep- water Horizon oil spill in 2010. Less known, but perhaps equally discon- certing, is the number 1.7 million—the number of gallons of Corexit, a toxic dispersant used to mitigate oil spills, that was also released into the Gulf of Mexico. Some observers claim that Corexit spared shorelines, wet- lands, and beaches from the worst of the oil spill.
    [Show full text]
  • The Origins of Pottery Among Late Prehistoric Hunter-Gatherers in California and the Western Great Basin
    See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/35493087 The origins of pottery among late prehistoric hunter-gatherers in california and the western great basin / Article · December 2000 Source: OAI CITATIONS READS 9 258 2 authors, including: Jelmer W. Eerkens University of California, Davis 117 PUBLICATIONS 1,997 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Evolution of Intoxicant Plant Use View project All content following this page was uploaded by Jelmer W. Eerkens on 03 September 2014. The user has requested enhancement of the downloaded file. UNIVERSITY OF CALIFORNIA Santa Barbara The Origins of Pottery among Late Prehistoric Hunter-Gatherers in California and the Western Great Basin A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Anthropology by Jelmer W. Eerkens Committee in charge: Professor Michael Jochim, Chairperson Professor Mark Aldenderfer Professor Robert Bettinger Professor Michael Glassow i The dissertation of Jelmer W. Eerkens is approved _______________________________________________ _______________________________________________ _______________________________________________ _______________________________________________ Committee Chairperson December 2000 ii December, 2000 Copyright by Jelmer W. Eerkens 2000 iii Acknowledgements Many people and organizations provided support and assistance to help make this dissertation a reality. I would like to thank the Wenner-Gren Foundation for Anthropological Research for providing funding in the form of a Predoctoral Grant (#6259), and the National Science Foundation for granting a Doctoral Dissertation Improvement Grant (#9902836). These funds were crucial to help pay for the Instrumental Neutron Activation Analyses, Gas-Chromatography Mass-Spectrometry analyses, and some supplementary dating, palaeobotanical, and other research referenced in the text.
    [Show full text]
  • Science Journals — AAAS
    RESEARCH EARLY ANIMALS years. For instance, hopanes are the hydrocarbon remains of bacterial hopanepolyols, whereas sat- urated steranes and aromatic steroids are diage- Ancient steroids establish netic products of eukaryotic sterols. The most common sterols of Eukarya possess a cholester- oid, ergosteroid, or stigmasteroid skeleton with the Ediacaran fossil Dickinsonia 27, 28, or 29 carbon atoms, respectively. These C27 to C29 sterols, distinguished by the alkylation as one of the earliest animals patternatpositionC-24inthesterolsidechain, function as membrane modifiers and are widely 1 1 2 3 distributed across extant Eukarya, but their rela- Ilya Bobrovskiy *, Janet M. Hope , Andrey Ivantsov , Benjamin J. Nettersheim , 3,4 1 tive abundances can give clues about the source Christian Hallmann , Jochen J. Brocks * organisms (24). Apart from Dickinsonia (Fig.1B),whichis The enigmatic Ediacara biota (571 million to 541 million years ago) represents the first one of the most recognizable Ediacaran fossils, macroscopic complex organisms in the geological record and may hold the key to our dickinsoniids include Andiva (Fig. 1C and fig. understanding of the origin of animals. Ediacaran macrofossils are as “strange as life on S1), Vendia, Yorgia, and other flattened Edia- another planet” and have evaded taxonomic classification, with interpretations ranging from caran organisms with segmented metameric marine animals or giant single-celled protists to terrestrial lichens. Here, we show that lipid bodies and a median line along the body axes, biomarkers extracted from organically preserved Ediacaran macrofossils unambiguously separating the “segments.” The specimens for clarify their phylogeny. Dickinsonia and its relatives solely produced cholesteroids, a Downloaded from this study were collected from two surfaces in hallmark of animals.
    [Show full text]
  • Bioactive Phytochemicals from Wild Arbutus Unedo L. Berries from Different Locations in Portugal: Quantification of Lipophilic Components
    Int. J. Mol. Sci. 2015, 16, 14194-14209; doi:10.3390/ijms160614194 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Bioactive Phytochemicals from Wild Arbutus unedo L. Berries from Different Locations in Portugal: Quantification of Lipophilic Components Daniela F. S. Fonseca 1, Ângelo C. Salvador 1,2, Sónia A. O. Santos 2, Carla Vilela 2, Carmen S. R. Freire 2, Armando J. D. Silvestre 2,* and Sílvia M. Rocha 1,* 1 Organic Chemistry, Natural and Agro-Food Products (QOPNA), Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal; E-Mails: [email protected] (D.F.S.F.); [email protected] (A.C.S.) 2 Aveiro Institute of Materials (CICECO), Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal; E-Mails: [email protected] (S.A.O.S.); [email protected] (C.V.); [email protected] (C.S.R.F.) * Authors to whom correspondence should be addressed; E-Mails: [email protected] (A.J.D.S.); [email protected] (S.M.R.); Tel.: +351-234-370-711 (A.J.D.S.); +351-234-401-524 (S.M.R.); Fax: +351-234-370-084 (A.J.D.S. & S.M.R.). Academic Editor: Maurizio Battino Received: 24 April 2015 / Accepted: 11 June 2015 / Published: 23 June 2015 Abstract: The lipophilic composition of wild Arbutus unedo L. berries, collected from six locations in Penacova (center of Portugal), as well as some general chemical parameters, namely total soluble solids, pH, titratable acidity, total phenolic content and antioxidant activity was studied in detail to better understand its potential as a source of bioactive compounds.
    [Show full text]
  • A Key Mammalian Cholesterol Synthesis Enzyme, Squalene Monooxygenase, Is Allosterically Stabilized by Its Substrate
    A key mammalian cholesterol synthesis enzyme, squalene monooxygenase, is allosterically stabilized by its substrate Hiromasa Yoshiokaa, Hudson W. Coatesb, Ngee Kiat Chuab, Yuichi Hashimotoa, Andrew J. Brownb,1, and Kenji Ohganea,c,1 aInstitute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan; bSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia; and cSynthetic Organic Chemistry Laboratory, RIKEN, 351-0198 Saitama, Japan Edited by Brenda A. Schulman, Max Planck Institute of Biochemistry, Martinsried, Germany, and approved February 18, 2020 (received for review September 20, 2019) Cholesterol biosynthesis is a high-cost process and, therefore, is the cognate E3 ligase for SM (9, 10), catalyzing its ubiquitination tightly regulated by both transcriptional and posttranslational in the N100 region (11). negative feedback mechanisms in response to the level of cellular Despite its importance in cholesterol-accelerated degradation, cholesterol. Squalene monooxygenase (SM, also known as squalene the structure and function of the SM-N100 region has not been epoxidase or SQLE) is a rate-limiting enzyme in the cholesterol fully resolved. Thus far, biochemical analyses have revealed the biosynthetic pathway and catalyzes epoxidation of squalene. The presence of a reentrant loop anchoring SM to the ER membrane stability of SM is negatively regulated by cholesterol via its and an amphipathic helix required for cholesterol-accelerated N-terminal regulatory domain (SM-N100). In this study, using a degradation (7, 8), while X-ray crystallography has revealed the SM-luciferase fusion reporter cell line, we performed a chemical architecture of the catalytic domain of SM (12). However, the genetics screen that identified inhibitors of SM itself as up-regulators highly hydrophobic and disordered nature of the N100 region of SM.
    [Show full text]