Energetics, Reproductive Ecology, and Human Evolution
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Two Case Studies Detailing Bayesian Parameter Inference for Dynamic Energy Budget Models
bioRxiv preprint doi: https://doi.org/10.1101/259705; this version posted July 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Two case studies detailing Bayesian parameter inference for dynamic energy budget models Philipp H. Boersch-SupanA,B,C,1 and Leah R. JohnsonD,2 July 30, 2018 ADepartment of Geography, University of Florida, Gainesville, FL 32611, USA BEmerging Pathogens Institute, University of Florida, Gainesville, FL 32610, USA CDepartment of Integrative Biology, University of South Florida, Tampa, FL 33610, USA DDepartment of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA [email protected] - ORCID ID 0000-0001-6723-6833 [email protected] - ORCID ID 0000-0002-9922-579X Abstract Mechanistic representations of individual life-history trajectories are powerful tools for the pre- diction of organismal growth, reproduction and survival under novel environmental conditions. Dynamic energy budget (DEB) theory provides compact models to describe the acquisition and allocation of energy by organisms over their full life cycle. However, estimating DEB model param- eters, and their associated uncertainties and covariances, is not trivial. Bayesian inference provides a coherent way to estimate parameter uncertainty, and propagate it through the model, while also making use of prior information to constrain the parameter space. We outline a Bayesian inference approach for energy budget models and provide two case studies – based on a simplified DEBkiss model, and the standard DEB model – detailing the implementation of such inference procedures using the open-source software package deBInfer. -
Helminth Infection, Fecundity, and Age of First Pregnancy in Women
RESEARCH | REPORTS PARASITOLOGY 70% of the population, the most common being hookworm (56%) and A. lumbricoides (15 to 20%) (11, 17). In both animal and human studies, parasites Helminth infection, fecundity, and have been shown to influence host reproduction via sexual behavior, brood or litter size, offspring age of first pregnancy in women size, incubation periods, conception rates, and pregnancy loss (18–22). In most cases, parasitism Aaron D. Blackwell,1,2,3* Marilyne A. Tamayo,4 Bret Beheim,2,5 reduces host reproduction by compromising Benjamin C. Trumble,1,2,3,6,7 Jonathan Stieglitz,2,5,8 Paul L. Hooper,2,9 reproductive organs or reducing energy budgets Melanie Martin,1,2,3 Hillard Kaplan,2,5 Michael Gurven1,2,3 (14, 23). However, among Tsimane adults, mor- bidity from intestinal helminth infections is low, Infection with intestinal helminths results in immunological changes that influence particularly for A. lumbricoides. Controlling for co-infections, and might influence fecundity by inducing immunological states affecting age and co-infection in our sample, hookworm conception and pregnancy. We investigated associations between intestinal helminths and infection is associated with slightly lower body fertility in women, using 9 years of longitudinal data from 986 Bolivian forager-horticulturalists, mass index (BMI) (generalized linear model, 2 experiencing natural fertility and 70% helminth prevalence. We found that different species b = –0.77 kg/m , P < 0.001) and hemoglobin (b = of helminth are associated with contrasting effects on fecundity. Infection with roundworm –0.19 g/dl, P =0.005),whereasA. lumbricoides is 2 (Ascaris lumbricoides) is associated with earlier first births and shortened interbirth intervals, not (b = –0.34 kg/m , P = 0.180; b = –0.07 g/dl, whereas infection with hookworm is associated with delayed first pregnancy and extended P = 0.413). -
Dinosaur Energetics: Setting the Bounds on Feasible Physiologies and Ecologies
Dinosaur energetics: setting the bounds on feasible physiologies and ecologies Andrew Clarke 1,2,* 1. British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, U.K. 2. School of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, U.K. *Corresponding author; e-mail: [email protected] Article type: Synthesis Keywords: dinosaur, energetics, growth, metabolism, migration, size, temperature. Accepted for publication by American Naturalist on 29 March 2013 and published electronically on 19 July 2013. American Naturalist 182 (3): 283-297, 2013; doi: 10.1086/671259). See: http://www.jstor.org/stable/10.1086/670340. ___________________________________________________________________________ ABSTRACT: The metabolic status of dinosaurs has long been debated but remains unresolved as no consistent picture has yet emerged from a range of anatomical and isotopic evidence. Quantitative analysis of dinosaur energetics, based on general principles applicable to all vertebrates, shows that many features of dinosaur lifestyle are compatible with a physiology similar to that of extant lizards, scaled up to dinosaur body masses and temperatures. Sufficient metabolic scope would have been available to support observed dinosaur growth rates and allow considerable locomotor activity, perhaps even migration. Since at least one dinosaur lineage evolved true endothermy, this analysis emphasises that there was no single dinosaur physiology. Many small theropods were insulated with feathers and appear to have been partial or full endotherms. Uninsulated small taxa, and all juveniles, would presumably have been ectothermic, with consequent diurnal and seasonal variations in body temperature. In larger taxa inertial homeothermy would have resulted in warm and stable body temperatures, but with a basal metabolism significantly below that of living mammals or birds of the same size. -
Fecundity Selection Theory: Concepts and Evidence
bioRxiv preprint doi: https://doi.org/10.1101/015586; this version posted February 23, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Fecundity selection theory: concepts and evidence Daniel Pincheira-Donoso1,3 & John Hunt2 1Laboratory of Evolutionary Ecology of Adaptations, School of Life Sciences, University of Lincoln, Brayford Campus, Lincoln, LN6 7DL, Lincolnshire, United Kingdom 2Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Penryn, Cornwall, TR10 9EZ, UK 3Corresponding author: [email protected] ABSTRACT Fitness results from the optimal balance between survival, mating success and fecundity. The interactions between these three components of fitness vary importantly depending on the selective context, from positive covariation between them, to antagonistic pleiotropic relationships when fitness increases in one reduce fitness of others. Therefore, elucidating the routes through which selection shapes life history and phenotypic adaptations via these fitness components is of primary significance to understand ecological and evolutionary dynamics. However, while the fitness components mediated by natural (survival) and sexual (mating success) selection have extensively been debated from most possible perspectives, fecundity selection remains considerably -
Leaf Radiative Properties and the Leaf Energy Budget
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Agronomy & Horticulture -- Faculty Publications Agronomy and Horticulture Department 2005 Leaf Radiative Properties and the Leaf Energy Budget Timothy J. Arkebauer University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/agronomyfacpub Arkebauer, Timothy J., "Leaf Radiative Properties and the Leaf Energy Budget" (2005). Agronomy & Horticulture -- Faculty Publications. 693. https://digitalcommons.unl.edu/agronomyfacpub/693 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Agronomy & Horticulture -- Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. 5 Leaf Radiative Properties and the Leaf Energy Budget T.J. ARKEBAUER University of Nebraska Lincoln, Nebraska Leaf radiative properties are the physical properties of leaves that characterize radiant energy exchange with their surroundings. Radiant energy exchange is an important consideration in studies of plant function since, for example, absorp- tion of photosynthetically active radiation (PAR) leads to the transformation of this energy into chemical energy via photosynthesis. Thus, plant productivity, and hence, agricultural production, ultimately depend on leaf radiative properties. Leaf temperature is an additional, very important, parameter in intimate association with leaf radiant energy exchange. This association occurs since energy gained via radiation must be in balance with energy lost through various processes and energy loss from the leaf is predicated on leaf temperature. Leaf temperature is a critical factor determining leaf transpiration (hence, crop water use), reaction rates of biochemical processes (hence, photosynthetic rates, respi- ration rates, growth rates and productivity), and many other aspects of plant func- tion. -
Life Table of Orius Insidiosus (Hemiptera: Anthocoridae) Feeding on Sitotroga Cerealella (Lepidoptera: Gelechiidae) Eggs
Research article http://www.revistas.unal.edu.co/index.php/refame Life table of Orius insidiosus (Hemiptera: Anthocoridae) feeding on Sitotroga cerealella (Lepidoptera: Gelechiidae) eggs Tabla de vida de Orius insidiosus (Hemiptera: Anthocoridae) alimentado con huevos de Sitotroga cerealella (Leideoptera: Gelechiidae) doi: 10.15446/rfna.v69n1.54745 Jhon Alexander Avellaneda Nieto1, Fernando Cantor Rincon1, Daniel Rodríguez Caicedo1* ABSTRACT Key words: To use a natural enemy to control an insect pest, it is important to determine the biological parameters Biological control of the native populations of the predator. The goal of this study was determinate the biological Pirate bugs parameters of O. insidiosus fed on Sitotroga cerealella eggs. A batch of 225 O. insidiosus eggs were Stock colony laid into bean pods. The bean pods were kept in glass jars, and the eggs and first instar nymphs were Sabana de Bogotá counted daily. All nymphs were extracted and individualized in Petri dishes. The presence/absence of exuvie was observed daily as a way to assess the emergence of adults from the nymphal stage. Seventeen adult couples were placed into Petri dishes with a segment of bean pod. The bean pod segments were extracted and replaced daily, counting the number of eggs present on the pods. The life cycle, survival percentage, sex ratio, male/female longevity, pre ovoposition, ovoposition and post ovoposition periods were determined. Finally, fertility life table parameters were estimated. The nymphal development time was 12.0 ± 0.22 days, with 80.47% ± 3.23 survival, while the total development time was 15.0 ± 0.23 days, with 66.67% ± 1.90 survival. -
Fecundity Selection Theory: Concepts and Evidence
bioRxiv preprint doi: https://doi.org/10.1101/015586; this version posted February 23, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Fecundity selection theory: concepts and evidence Daniel Pincheira-Donoso1,3 & John Hunt2 1Laboratory of Evolutionary Ecology of Adaptations, School of Life Sciences, University of Lincoln, Brayford Campus, Lincoln, LN6 7DL, Lincolnshire, United Kingdom 2Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Penryn, Cornwall, TR10 9EZ, UK 3Corresponding author: [email protected] ABSTRACT Fitness results from the optimal balance between survival, mating success and fecundity. The interactions between these three components of fitness vary importantly depending on the selective context, from positive covariation between them, to antagonistic pleiotropic relationships when fitness increases in one reduce fitness of others. Therefore, elucidating the routes through which selection shapes life history and phenotypic adaptations via these fitness components is of primary significance to understand ecological and evolutionary dynamics. However, while the fitness components mediated by natural (survival) and sexual (mating success) selection have extensively been debated from most possible perspectives, fecundity selection remains considerably -
The Body's Energy Budget
The Body’s Energy Budget energy is measured in units called kcals = Calories the more H’s a molecule contains the more ATP (energy) can be generated of the various energy pathways: fat provides the most energy for its weight note all the H’s more oxidation can occur eg: glucose has 12 H’s 38ATP’s a 16-C FA has 32 H’s 129ATP’s we take in energy continuously we use energy periodically optimal body conditions when energy input = energy output any excess energy intake is stored as fat average person takes in ~1 Million Calories and expends 99% of them maintains energy stability 1 lb of body fat stores 3500 Calories 454g: 87% fat 395g x 9 Cal/g = 3555 kcal would seem if you burn an extra 3500 Cal you would lose 1 lb; and if you eat an extra 3500 Cal you would gain 1 lb not always so: 1. when a person overeats much of the excess energy is stored; some is spent to maintain a heavier body 2. People seem to gain more body fat when they eat extra fat calories than when they eat extra carbohydrate calories 3. They seem to lose body fat most efficiently when they limit fat calories For overweight people a reasonable rate of wt loss is 1/2 – 1 lb/week can be achieved with Cal intake of ~ 10 Cal/lb of body wt. Human Anatomy & Physiology: Nutrition and Metabolism; Ziser, 2004 5 Quicker Weight Loss: 1. may lose lean tissue 2. may not get 100% of nutrients 3. -
Fecundity and Survival in Relation to Resistance to Oxidative Stress in a Free-Living Bird
Ecology, 89(8), 2008, pp. 2584–2593 Ó 2008 by the Ecological Society of America FECUNDITY AND SURVIVAL IN RELATION TO RESISTANCE TO OXIDATIVE STRESS IN A FREE-LIVING BIRD 1,4 2 1 3 2 PIERRE BIZE, GODEFROY DEVEVEY, PATRICIA MONAGHAN, BLANDINE DOLIGEZ, AND PHILIPPE CHRISTE 1Division of Environmental and Evolutionary Biology, Glasgow University, Graham Kerr Building, Glasgow G20 8QQ United Kingdom 2Department of Ecology and Evolution, University of Lausanne, Biophore, 1015 Lausanne, Switzerland 3Department of Biometry and Evolutionary Biology, CNRS UMR 5558, University Lyon I, Baˆtiment Gregor Mendel, 43 Boulevard du 11 Novembre 1918, 69622 Villeurbanne Cedex, France Abstract. Major life history traits, such as fecundity and survival, have been consistently demonstrated to covary positively in nature, some individuals having more resources than others to allocate to all aspects of their life history. Yet, little is known about which resources (or state variables) may account for such covariation. Reactive oxygen species (ROS) are natural by-products of metabolism and, when ROS production exceeds antioxidant defenses, organisms are exposed to oxidative stress that can have deleterious effects on their fecundity and survival. Using a wild, long-lived bird, the Alpine Swift (Apus melba), we examined whether individual red cell resistance to oxidative stress covaried with fecundity and survival. We found that males that survived to the next breeding season tended to be more resistant to oxidative stress, and females with higher resistance to oxidative stress laid larger clutches. Furthermore, the eggs of females with low resistance to oxidative stress were less likely to hatch than those of females with high resistance to oxidative stress. -
Natural Family Planning ………..……………………………………………
Summer/Fall 2014 ● Vol. 25, Nos. 3 & 4 Richard J. Fehring, PhD, RN, FAAN – Marquette University College of Nursing In this issue Natural Family Planning ………..……………………………………………. 2 Fertility/Infertility …………...………………………………………………... 7 Pregnancy ….……………………………………………………….…………. 9 Menstrual Cycle ………………………………………………………………. 10 Under the Microscope ………………………………………………………... 12 A Brief History of Natural Family Planning Current Medical Research is a publication of the Natural Family Planning Program of the United States Conference of Catholic Bishops. © 2014 USCCB. The managing editor is Theresa Notare, PhD, Assistant Director. Permission is granted to reproduce in whole or in part, in print and/or electronically, with the following statement: Current Medical Research, © 2014 USCCB, volume # (year): page #. Used with permission. 1 Natural Family Planning Natural Family Planning Differentiates Women’s Perception of the Availability of Reproductive Health Services in Catholic Hospitals Catholic hospitals and health care systems provide approximately 10% of the health care in the United States. Furthermore, in some smaller communities Catholic hospitals and Catholic health care services are the only health services available. Previous research has shown that Catholic hospitals that follow Catholic Church teachings prevent the use of “standard” (i.e. immoral) reproductive services and that obstetricians and gynecologists view Catholic health systems as preventing the availability of “full” (but often immoral) reproductive services. Researchers theorized that women patients of reproductive age would be surprised and disturbed if they understood that Catholic health care systems are limited in the provision of some types of women’s health care services (Guiahi, Sheeder, and Teal 2014). Therefore, these researchers set out to determine if women of reproductive age would expect different reproductive services in a Catholic hospital compared to a secular or non-Catholic hospital. -
The Evolution of Pueriparity Maintains Multiple Paternity in a Polymorphic Viviparous Salamander Lucía Alarcón‑Ríos 1*, Alfredo G
www.nature.com/scientificreports OPEN The evolution of pueriparity maintains multiple paternity in a polymorphic viviparous salamander Lucía Alarcón‑Ríos 1*, Alfredo G. Nicieza 1,2, André Lourenço 3,4 & Guillermo Velo‑Antón 3* The reduction in fecundity associated with the evolution of viviparity may have far‑reaching implications for the ecology, demography, and evolution of populations. The evolution of a polygamous behaviour (e.g. polyandry) may counteract some of the efects underlying a lower fecundity, such as the reduction in genetic diversity. Comparing patterns of multiple paternity between reproductive modes allows us to understand how viviparity accounts for the trade-of between ofspring quality and quantity. We analysed genetic patterns of paternity and ofspring genetic diversity across 42 families from two modes of viviparity in a reproductive polymorphic species, Salamandra salamandra. This species shows an ancestral (larviparity: large clutches of free aquatic larvae), and a derived reproductive mode (pueriparity: smaller clutches of larger terrestrial juveniles). Our results confrm the existence of multiple paternity in pueriparous salamanders. Furthermore, we show the evolution of pueriparity maintains, and even increases, the occurrence of multiple paternity and the number of sires compared to larviparity, though we did not fnd a clear efect on genetic diversity. High incidence of multiple paternity in pueriparous populations might arise as a mechanism to avoid fertilization failures and to ensure reproductive success, and thus has important implications in highly isolated populations with small broods. Te evolution of viviparity entails pronounced changes in individuals’ reproductive biology and behaviour and, by extension, on population dynamics1–3. For example, viviparous species ofen show an increased parental invest- ment compared to oviparous ones because they produce larger and more developed ofspring that are protected from external pressures for longer periods within the mother 4–7. -
Thamnophis Gigas)
Herpetological Conservation and Biology 13(1):80–90. Submitted: 2 June 2017; Accepted: 11 December 2017; Published 30 April 2018. REPRODUCTIVE FREQUENCY AND SIZE-DEPENDENCE OF FECUNDITY IN THE GIANT GARTERSNAKE (THAMNOPHIS GIGAS) JONATHAN P. ROSE1, JULIA S.M. ERSAN, GLENN D. WYLIE, MICHAEL L. CASAZZA, AND BRIAN J. HALSTEAD U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California 95620, USA 1Corresponding author, email: [email protected] Abstract.—How reproductive output changes with age or size is a key life-history trait that can affect which demographic rates most influence population growth. Although many studies have investigated the reproductive ecology of gartersnakes, we know little about reproduction in the threatened Giant Gartersnake, Thamnophis gigas. We used X-radiography to determine reproductive status and estimated fecundity for 73 female T. gigas collected from several regions within the range of this species in the Sacramento Valley of California, USA, and synthesize these data with data from litters born in captivity to improve our understanding of reproduction in this species. Average total litter size determined from X-rays (15.9) and captive-born litters (15.5) are within the ranges reported from other gartersnakes, but captive-born litters had high rates of stillbirth. Only 154 of 202 neonates from captive snakes were born alive, and seven of 13 litters contained at least one stillborn neonate. We found that fecundity was positively related to maternal snout-vent length, and some evidence that larger litters contained smaller neonates. The proportion of X-rayed females that were gravid was 0.50 in 2014, 0.47 in and 2015, and 0.64 in 2016.