1 Supplementary Table 1. Specificity of NMDAR Antagonists Drug Target
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Ketamine As a Novel Treatment for Major Depressive Disorder and Bipolar Depression: a Systematic Review and Quantitative Meta-Analysis☆
General Hospital Psychiatry 37 (2015) 178–184 Contents lists available at ScienceDirect General Hospital Psychiatry journal homepage: http://www.ghpjournal.com Ketamine as a novel treatment for major depressive disorder and bipolar depression: a systematic review and quantitative meta-analysis☆ Ellen E. Lee, M.D., Megan P. Della Selva, M.D., Anson Liu, M.D., Seth Himelhoch, M.D., M.P.H. ⁎ Department of Psychiatry, University of Maryland School of Medicine, Baltimore, MD article info abstract Article history: Objective: Given the significant disability, morbidity and mortality associated with depression, the promising Received 9 September 2014 recent trials of ketamine highlight a novel intervention. A meta-analysis was conducted to assess the efficacy Revised 29 December 2014 of ketamine in comparison with placebo for the reduction of depressive symptoms in patients who meet criteria Accepted 8 January 2015 for a major depressive episode. Method: Two electronic databases were searched in September 2013 for English-language studies that were ran- Keywords: domized placebo-controlled trials of ketamine treatment for patients with major depressive disorder or bipolar Ketamine Depression depression and utilized a standardized rating scale. Studies including participants receiving electroconvulsive ther- Therapy apy and adolescent/child participants were excluded. Five studies were included in the quantitative meta-analysis. Meta-analysis Results: The quantitative meta-analysis showed that ketamine significantly reduced depressive symptoms. The overall effect size at day 1 was large and statistically significant with an overall standardized mean difference of 1.01 (95% confidence interval 0.69–1.34) (Pb.001), with the effects sustained at 7 days postinfusion. The heteroge- neity of the studies was low and not statistically significant, and the funnel plot showed no publication bias. -
Assessment of Combined Toxicity of Heavy Metals from Industrial Wastewaters on Photobacterium Phosphoreum T3S
Appl Water Sci DOI 10.1007/s13201-016-0385-4 ORIGINAL ARTICLE Assessment of combined toxicity of heavy metals from industrial wastewaters on Photobacterium phosphoreum T3S 1,2 1 2 1 2 BibiSaima Zeb • Zheng Ping • Qaisar Mahmood • Qiu Lin • Arshid Pervez • 2 2 2 Muhammad Irshad • Muhammad Bilal • Zulfiqar Ahmad Bhatti • Shahida Shaheen2 Received: 19 May 2015 / Accepted: 19 January 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract This research work is focusing on the toxicities Introduction of heavy metals of industrial origin to anaerobic digestion of the industrial wastewater. Photobacterium phospho- The presence of heavy metals in excess amounts inter- reum T3S was used as an indicator organism. The acute feres with the beneficial uses of water because of the toxicities of heavy metals on P. phosphoreum T3S were toxicity of heavy metals and the biomagnification effect assessed during 15-min half inhibitory concentration brought on by its accumulation on ecology (Chang et al. (IC50) as indicator at pH 5.5–6. Toxicity assays involved 2006; Altas 2009). During recent times, heavy metals the assessment of multicomponent mixtures using TU and were focus of attention owing to their hazardous nature MTI approaches. The results of individual toxicity indi- and subsequent toxicity studies. Various workers have cated that the toxicity of Cd, Cu and Pb on P. phospho- assessed the combined toxicity of heavy metals (Su reum increased with increasing concentrations and there et al. 2012;Quetal.2013; Mochida et al. 2006). It has was a linear correlation. The 15-min IC50 values of Cd, Cu been argued that the effects caused by combinations of and Pb were 0.537, 1.905 and 1.231 mg/L, respectively, various heavy metals may be more threatening and and their toxic order was Cd [ Pb [ Cu. -
Introduction
Guidance for Assay Development & HTS March 2007 Version 5 Section I: Introduction Introduction Copyright © 2005, Eli Lilly and Company and the National Institutes of Health Chemical Genomics Center. All Rights Reserved. For more information, please review the Privacy Policy and Site Usage and Agreement. Table of Contents A. INTRODUCTION This document is written to provide guidance to investigators that are interested in developing assays useful for the evaluation of compound collections to identify chemical probes that modulate the activity of biological targets. Originally written as a guide for therapeutic projects teams within a major pharmaceutical company, this manual has been adapted to provide guidelines for: a. Identifying potential assay formats compatible with High Throughput Screen (HTS), and Structure Activity Relationship (SAR) b. Developing optimal assay reagents c. Optimizing assay protocol with respect to sensitivity, dynamic range, signal intensity and stability d. Adopting screening assays to automation and scale up in microtiter plate formats e. Statistical validation of the assay performance parameters f. Secondary follow up assays for chemical probe validation and SAR refinement g. Data standards to be followed in reporting screening and SAR assay results. General definition of biological assays This manual is intended to provide guidance in the area of biological assay development, screening and compound evaluation. In this regard an assay is defined by a set of reagents that produce a detectable signal allowing a biological process to be quantified. In general, the quality of an assay is defined by the robustness and reproducibility of this signal in the absence of any test compounds or in the presence of inactive compounds. -
Ion Channels
UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. -
An Online Tool for Calculating and Mining Dose–Response Data Nicholas A
Clark et al. BMC Cancer (2017) 17:698 DOI 10.1186/s12885-017-3689-3 SOFTWARE Open Access GRcalculator: an online tool for calculating and mining dose–response data Nicholas A. Clark1†, Marc Hafner2†, Michal Kouril3, Elizabeth H. Williams2, Jeremy L. Muhlich2, Marcin Pilarczyk1, Mario Niepel2, Peter K. Sorger2 and Mario Medvedovic1* Abstract Background: Quantifying the response of cell lines to drugs or other perturbagens is the cornerstone of pre-clinical drug development and pharmacogenomics as well as a means to study factors that contribute to sensitivity and resistance. In dividing cells, traditional metrics derived from dose–response curves such as IC50, AUC, and Emax, are confounded by the number of cell divisions taking place during the assay, which varies widely for biological and experimental reasons. Hafner et al. (Nat Meth 13:521–627, 2016) recently proposed an alternative way to quantify drug response, normalized growth rate (GR) inhibition, that is robust to such confounders. Adoption of the GR method is expected to improve the reproducibility of dose–response assays and the reliability of pharmacogenomic associations (Hafner et al. 500–502, 2017). Results: We describe here an interactive website (www.grcalculator.org) for calculation, analysis, and visualization of dose–response data using the GR approach and for comparison of GR and traditional metrics. Data can be user-supplied or derived from published datasets. The web tools are implemented in the form of three integrated Shiny applications (grcalculator, grbrowser, and grtutorial) deployed through a Shiny server. Intuitive graphical user interfaces (GUIs) allow for interactive analysis and visualization of data. The Shiny applications make use of two R packages (shinyLi and GRmetrics) specifically developed for this purpose. -
Lack of Correlation Between in Vitro and in Vivo Studies on the Inhibitory Effects Of
pharmaceutics Article Lack of Correlation between In Vitro and In Vivo Studies on the Inhibitory Effects of (-)-Sophoranone on CYP2C9 Is Attributable to Low Oral Absorption and Extensive Plasma Protein Binding of (-)-Sophoranone 1, 2,3, 3 3 3 Yu Fen Zheng y, Soo Hyeon Bae y , Zhouchi Huang , Soon Uk Chae , Seong Jun Jo , Hyung Joon Shim 3, Chae Bin Lee 3, Doyun Kim 3,4, Hunseung Yoo 4 and Soo Kyung Bae 3,* 1 School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, 639 Longmian Road, Jiangning District, Nanjing 211198, China; [email protected] 2 Q-fitter, Inc., Seoul 06578, Korea; sh.bae@qfitter.com 3 College of Pharmacy and Integrated Research Institute of Pharmaceutical Sciences, The Catholic University, Korea, Bucheon 14662, Korea; [email protected] (Z.H.); [email protected] (S.U.C.); [email protected] (S.J.J.); [email protected] (H.J.S.); [email protected] (C.B.L.); [email protected] (D.K.) 4 Life Science R&D Center, SK Chemicals, 310 Pangyo-ro, Sungnam 13494, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-2-2164-4054 These authors contributed equally to this work. y Received: 8 March 2020; Accepted: 5 April 2020; Published: 7 April 2020 Abstract: (-)-Sophoranone (SPN) is a bioactive component of Sophora tonkinensis with various pharmacological activities. This study aims to evaluate its in vitro and in vivo inhibitory potential against the nine major CYP enzymes. Of the nine tested CYPs, it exerted the strongest inhibitory effect on CYP2C9-mediated tolbutamide 4-hydroxylation with the lowest IC50 (Ki) value of 0.966 0.149 µM (0.503 0.0383 µM), in a competitive manner. -
(2R,6R)-Hydroxynorketamine Do Not Block NMDA Receptor Function
Antidepressant-relevant concentrations of the ketamine metabolite (2R,6R)-hydroxynorketamine do not block NMDA receptor function Eric W. Lumsdena,1, Timothy A. Troppolib,1, Scott J. Myersc, Panos Zanosd, Yasco Aracavaa, Jan Kehre,f, Jacqueline Lovettg, Sukhan Kimc, Fu-Hua Wange,f, Staffan Schmidte,f, Carleigh E. Jenned, Peixiong Yuanh, Patrick J. Morrisi, Craig J. Thomasi, Carlos A. Zarate Jr.h, Ruin Moaddelg, Stephen F. Traynelisc,2, Edna F. R. Pereiraa,j,2, Scott M. Thompsonb,d,2, Edson X. Albuquerquea,j,k,2, and Todd D. Gouldd,j,l,m,2,3 aDepartment of Epidemiology and Public Health, Division of Translational Toxicology, University of Maryland School of Medicine, Baltimore, MD 21201; bDepartment of Physiology, University of Maryland School of Medicine, Baltimore, MD 21201; cDepartment of Pharmacology, Emory University, Atlanta, GA 30329; dDepartment of Psychiatry, University of Maryland School of Medicine, Baltimore, MD 21201; eDepartment of Physiology and Pharmacology, Karolinska Institute, SE-171 77 Stockholm, Sweden; fPronexus Analytical AB, SE-167 33 Bromma, Sweden; gBiomedical Research Center, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224; hSection on the Neurobiology and Treatment of Mood Disorders, Intramural Research Program, National Institute of Mental Health, National Institutes of Health, Bethesda, MD 20892; iDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, Intramural Research Program, National Institutes of Health, Bethesda, MD 20892; jDepartment of Pharmacology, University of Maryland School of Medicine, Baltimore, MD 21201; kDepartment of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201; lDepartment of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, MD 21201; and mVeterans Affairs Maryland Health Care System, Baltimore, MD 21201 Edited by Solomon H. -
Synthesis and Cytotoxicity Evaluation of Novel Asymmetrical Mono-Carbonyl Analogs of Curcumin (Amacs) Against Vero, Hela, and MCF7 Cell Lines
Scientia Pharmaceutica Article Synthesis and Cytotoxicity Evaluation of Novel Asymmetrical Mono-Carbonyl Analogs of Curcumin (AMACs) against Vero, HeLa, and MCF7 Cell Lines Pekik Wiji Prasetyaningrum, Anton Bahtiar ID and Hayun Hayun * ID Faculty of Pharmacy, Universitas Indonesia, Depok 16424, West Java, Indonesia; [email protected] (P.W.P.); [email protected] (A.B.) * Correspondence: [email protected]; Tel.: +62-21-727-0031 Received: 8 May 2018; Accepted: 5 June 2018; Published: 7 June 2018 Abstract: A series of novel asymmetrical mono-carbonyl analogs of curcumin (AMACs) were synthesized and evaluated for cytotoxic activity using BSLT and MTT assay against Vero, HeLa, and MCF7 cell lines. The structures of the synthesized compounds were confirmed by FTIR, 1H-NMR, 13C-NMR, and mass spectral data. The results of the cytotoxicity evaluation showed that the synthesized compounds exhibited moderate to very high toxic activity in BSLT (LC50 value 29.80–1704.23 µM); most of the compound exhibited cytotoxic activity against HeLa cell lines, which is comparable to the activity of cisplatin (IC50 value 40.65–95.55 µM), and most of the compound tested against MCF7 cell lines exhibited moderate to very high cytotoxic activity (IC50 value 7.86–35.88 µM). However, the selectivity index (SI) of the compounds was low (<1–1.96). Among the synthesized compounds, compound 1b was the most cytotoxic and selective against MCF7 cell lines. It could be considered for further development to obtain the more active and selective chemotherapeutic agents against breast cancer. Keywords: asymmetrical mono-carbonyl analogs of curcumin; AMACs; synthesis; cytotoxicity; Vero; HeLa; MCF7; cell lines 1. -
Lipid Sensitivity of a Prokaryotic Plgic 1 Structural Sensitivity of a Prokaryotic Pentameric Ligand-Gated Ion Channel To
JBC Papers in Press. Published on March 5, 2013 as Manuscript M113.458133 The latest version is at http://www.jbc.org/cgi/doi/10.1074/jbc.M113.458133 Lipid sensitivity of a prokaryotic pLGIC Structural sensitivity of a prokaryotic pentameric ligand-gated ion channel to its membrane environment* Jonathan M. Labriola1, Akash Pandhare2, Michaela Jansen3, Michael P. Blanton2, Pierre-Jean Corringer4, and John E. Baenziger1 1From the Department of Biochemistry, Microbiology, and Immunology University of Ottawa, Ottawa ON, K1H 8M5, Canada 2Department of Pharmacology and Neuroscience and the Center for Membrane Protein Research, School of Medicine, Texas Tech University Health Sciences Center, Lubbock, TX 79430 3Department of Cell Physiology and Molecular Biophysics and the Center for Membrane Protein Research, School of Medicine, Texas Tech University Health Sciences Center, Lubbock, TX. 79430. Downloaded from 4G5 Group of Channel-Receptors, CNRS URA 2182 Pasteur Institute, F75015, Paris, France *Running title: Lipid sensitivity of a prokaryotic pLGIC www.jbc.org 1To whom correspondence should be addressed: John E. Baenziger, Department of Biochemistry, Microbiology, and Immunology, University of Ottawa, 451 Smyth Rd. Ottawa, ON, K1H 8M5, Canada, Tel.: (613) 562-5800 x8222; Fax.: (613) 562-5440; E-mail: [email protected]. at TTU-HEALTH SCIENCES CTR, on March 5, 2013 Keywords: prokaryotic pentameric ligand-gated ion channels, membrane sensitivity, structure, function _____________________________________________________________________________________ Background: The lipid sensitivity of the expression, and amenability to prokaryotic pentameric ligand-gated ion channel crystallographic analysis. We show here that (pLGIC), GLIC, is poorly characterized. membrane-reconstituted GLIC exhibits structural and biophysical properties similar Results: GLIC is more thermally stable and to those of the membrane-reconstituted does not exhibit the same propensity to adopt an nAChR, although GLIC is substantially more uncoupled conformation as the Torpedo nAChR. -
Antidepressant Effects of Ketamine in Depressed Patients
BRIEF REPORTS Antidepressant Effects of Ketamine in Depressed Patients Robert M. Berman, Angela Cappiello, Amit Anand, Dan A. Oren, George R. Heninger, Dennis S. Charney, and John H. Krystal Background: A growing body of preclinical research Papp and Moryl 1994, 1996; Przegalinski et al 1997; suggests that brain glutamate systems may be involved in Trullas and Skolnick 1990) but not all (Panconi et al 1993) the pathophysiology of major depression and the mecha- studies. Conversely, antidepressant administration has nism of action of antidepressants. This is the first placebo- been shown to affect NMDA receptor function (Mjellem controlled, double-blinded trial to assess the treatment et al 1993) and receptor binding profiles (Paul et al 1994). effects of a single dose of an N-methyl-D-aspartate Chronic, but not acute, administration of antidepressant (NMDA) receptor antagonist in patients with depression. medications consistently decreases the potency of glycine Methods: Seven subjects with major depression com- to inhibit [3H]-5,7-dichlorkynurenic acid binding to the pleted 2 test days that involved intravenous treatment with strychnine-insensitive glycine sites. These adaptations ketamine hydrochloride (.5 mg/kg) or saline solutions were found in 16 of 17 tested antidepressant treatments under randomized, double-blind conditions. (Paul et al 1994), thereby making this a more sensitive Results: Subjects with depression evidenced significant predictor of antidepressant activity than the forced swim improvement in depressive symptoms within 72 hours after ketamine but not placebo infusion (i.e., mean 25-item test or downregulation of beta-adrenergic receptors. A Hamilton Depression Rating Scale scores decreased by 14 transcriptional mechanism for this phenomenon is sug- Ϯ SD 10 points vs. -
Ligand-Gated Ion Channels
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: Ligand-gated ion channels. British Journal of Pharmacology (2015) 172, 5870–5903 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: Ligand-gated ion channels Stephen PH Alexander1, John A Peters2, Eamonn Kelly3, Neil Marrion3, Helen E Benson4, Elena Faccenda4, Adam J Pawson4, Joanna L Sharman4, Christopher Southan4, Jamie A Davies4 and CGTP Collaborators L 1 School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, N 2Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/ doi/10.1111/bph.13350/full. Ligand-gated ion channels are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage- gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The Concise Guide is published in landscape format in order to facilitate comparison of related targets. -
Federal Register / Vol. 60, No. 80 / Wednesday, April 26, 1995 / Notices DIX to the HTSUS—Continued
20558 Federal Register / Vol. 60, No. 80 / Wednesday, April 26, 1995 / Notices DEPARMENT OF THE TREASURY Services, U.S. Customs Service, 1301 TABLE 1.ÐPHARMACEUTICAL APPEN- Constitution Avenue NW, Washington, DIX TO THE HTSUSÐContinued Customs Service D.C. 20229 at (202) 927±1060. CAS No. Pharmaceutical [T.D. 95±33] Dated: April 14, 1995. 52±78±8 ..................... NORETHANDROLONE. A. W. Tennant, 52±86±8 ..................... HALOPERIDOL. Pharmaceutical Tables 1 and 3 of the Director, Office of Laboratories and Scientific 52±88±0 ..................... ATROPINE METHONITRATE. HTSUS 52±90±4 ..................... CYSTEINE. Services. 53±03±2 ..................... PREDNISONE. 53±06±5 ..................... CORTISONE. AGENCY: Customs Service, Department TABLE 1.ÐPHARMACEUTICAL 53±10±1 ..................... HYDROXYDIONE SODIUM SUCCI- of the Treasury. NATE. APPENDIX TO THE HTSUS 53±16±7 ..................... ESTRONE. ACTION: Listing of the products found in 53±18±9 ..................... BIETASERPINE. Table 1 and Table 3 of the CAS No. Pharmaceutical 53±19±0 ..................... MITOTANE. 53±31±6 ..................... MEDIBAZINE. Pharmaceutical Appendix to the N/A ............................. ACTAGARDIN. 53±33±8 ..................... PARAMETHASONE. Harmonized Tariff Schedule of the N/A ............................. ARDACIN. 53±34±9 ..................... FLUPREDNISOLONE. N/A ............................. BICIROMAB. 53±39±4 ..................... OXANDROLONE. United States of America in Chemical N/A ............................. CELUCLORAL. 53±43±0