Individual Genome Sequence Predisposition and Carrier Screening Test Gene List (By Disease)
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The Role of Z-Disc Proteins in Myopathy and Cardiomyopathy
International Journal of Molecular Sciences Review The Role of Z-disc Proteins in Myopathy and Cardiomyopathy Kirsty Wadmore 1,†, Amar J. Azad 1,† and Katja Gehmlich 1,2,* 1 Institute of Cardiovascular Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK; [email protected] (K.W.); [email protected] (A.J.A.) 2 Division of Cardiovascular Medicine, Radcliffe Department of Medicine and British Heart Foundation Centre of Research Excellence Oxford, University of Oxford, Oxford OX3 9DU, UK * Correspondence: [email protected]; Tel.: +44-121-414-8259 † These authors contributed equally. Abstract: The Z-disc acts as a protein-rich structure to tether thin filament in the contractile units, the sarcomeres, of striated muscle cells. Proteins found in the Z-disc are integral for maintaining the architecture of the sarcomere. They also enable it to function as a (bio-mechanical) signalling hub. Numerous proteins interact in the Z-disc to facilitate force transduction and intracellular signalling in both cardiac and skeletal muscle. This review will focus on six key Z-disc proteins: α-actinin 2, filamin C, myopalladin, myotilin, telethonin and Z-disc alternatively spliced PDZ-motif (ZASP), which have all been linked to myopathies and cardiomyopathies. We will summarise pathogenic variants identified in the six genes coding for these proteins and look at their involvement in myopathy and cardiomyopathy. Listing the Minor Allele Frequency (MAF) of these variants in the Genome Aggregation Database (GnomAD) version 3.1 will help to critically re-evaluate pathogenicity based on variant frequency in normal population cohorts. -
Neuromuscular Disorders Neurology in Practice: Series Editors: Robert A
Neuromuscular Disorders neurology in practice: series editors: robert a. gross, department of neurology, university of rochester medical center, rochester, ny, usa jonathan w. mink, department of neurology, university of rochester medical center,rochester, ny, usa Neuromuscular Disorders edited by Rabi N. Tawil, MD Professor of Neurology University of Rochester Medical Center Rochester, NY, USA Shannon Venance, MD, PhD, FRCPCP Associate Professor of Neurology The University of Western Ontario London, Ontario, Canada A John Wiley & Sons, Ltd., Publication This edition fi rst published 2011, ® 2011 by Blackwell Publishing Ltd Blackwell Publishing was acquired by John Wiley & Sons in February 2007. Blackwell’s publishing program has been merged with Wiley’s global Scientifi c, Technical and Medical business to form Wiley-Blackwell. Registered offi ce: John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial offi ces: 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030-5774, USA For details of our global editorial offi ces, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley-blackwell The right of the author to be identifi ed as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher. -
WES Gene Package Multiple Congenital Anomalie.Xlsx
Whole Exome Sequencing Gene package Multiple congenital anomalie, version 5, 1‐2‐2018 Technical information DNA was enriched using Agilent SureSelect Clinical Research Exome V2 capture and paired‐end sequenced on the Illumina platform (outsourced). The aim is to obtain 8.1 Giga base pairs per exome with a mapped fraction of 0.99. The average coverage of the exome is ~50x. Duplicate reads are excluded. Data are demultiplexed with bcl2fastq Conversion Software from Illumina. Reads are mapped to the genome using the BWA‐MEM algorithm (reference: http://bio‐bwa.sourceforge.net/). Variant detection is performed by the Genome Analysis Toolkit HaplotypeCaller (reference: http://www.broadinstitute.org/gatk/). The detected variants are filtered and annotated with Cartagenia software and classified with Alamut Visual. It is not excluded that pathogenic mutations are being missed using this technology. At this moment, there is not enough information about the sensitivity of this technique with respect to the detection of deletions and duplications of more than 5 nucleotides and of somatic mosaic mutations (all types of sequence changes). HGNC approved Phenotype description including OMIM phenotype ID(s) OMIM median depth % covered % covered % covered gene symbol gene ID >10x >20x >30x A4GALT [Blood group, P1Pk system, P(2) phenotype], 111400 607922 101 100 100 99 [Blood group, P1Pk system, p phenotype], 111400 NOR polyagglutination syndrome, 111400 AAAS Achalasia‐addisonianism‐alacrimia syndrome, 231550 605378 73 100 100 100 AAGAB Keratoderma, palmoplantar, -
Orphanet Report Series Rare Diseases Collection
Marche des Maladies Rares – Alliance Maladies Rares Orphanet Report Series Rare Diseases collection DecemberOctober 2013 2009 List of rare diseases and synonyms Listed in alphabetical order www.orpha.net 20102206 Rare diseases listed in alphabetical order ORPHA ORPHA ORPHA Disease name Disease name Disease name Number Number Number 289157 1-alpha-hydroxylase deficiency 309127 3-hydroxyacyl-CoA dehydrogenase 228384 5q14.3 microdeletion syndrome deficiency 293948 1p21.3 microdeletion syndrome 314655 5q31.3 microdeletion syndrome 939 3-hydroxyisobutyric aciduria 1606 1p36 deletion syndrome 228415 5q35 microduplication syndrome 2616 3M syndrome 250989 1q21.1 microdeletion syndrome 96125 6p subtelomeric deletion syndrome 2616 3-M syndrome 250994 1q21.1 microduplication syndrome 251046 6p22 microdeletion syndrome 293843 3MC syndrome 250999 1q41q42 microdeletion syndrome 96125 6p25 microdeletion syndrome 6 3-methylcrotonylglycinuria 250999 1q41-q42 microdeletion syndrome 99135 6-phosphogluconate dehydrogenase 67046 3-methylglutaconic aciduria type 1 deficiency 238769 1q44 microdeletion syndrome 111 3-methylglutaconic aciduria type 2 13 6-pyruvoyl-tetrahydropterin synthase 976 2,8 dihydroxyadenine urolithiasis deficiency 67047 3-methylglutaconic aciduria type 3 869 2A syndrome 75857 6q terminal deletion 67048 3-methylglutaconic aciduria type 4 79154 2-aminoadipic 2-oxoadipic aciduria 171829 6q16 deletion syndrome 66634 3-methylglutaconic aciduria type 5 19 2-hydroxyglutaric acidemia 251056 6q25 microdeletion syndrome 352328 3-methylglutaconic -
Distal Myopathies a Review: Highlights on Distal Myopathies with Rimmed Vacuoles
Review Article Distal myopathies a review: Highlights on distal myopathies with rimmed vacuoles May Christine V. Malicdan, Ikuya Nonaka Department of Neuromuscular Research, National Institutes of Neurosciences, National Center of Neurology and Psychiatry, Tokyo, Japan Distal myopathies are a group of heterogeneous disorders Since the discovery of the gene loci for a number classiÞ ed into one broad category due to the presentation of distal myopathies, several diseases previously of weakness involving the distal skeletal muscles. The categorized as different disorders have now proven to recent years have witnessed increasing efforts to identify be the same or allelic disorders (e.g. distal myopathy the causative genes for distal myopathies. The identiÞ cation with rimmed vacuoles and hereditary inclusion body of few causative genes made the broad classiÞ cation of myopathy, Miyoshi myopathy and limb-girdle muscular these diseases under “distal myopathies” disputable and dystrophy type 2B (LGMD 2B). added some enigma to why distal muscles are preferentially This review will focus on the most commonly affected. Nevertheless, with the clariÞ cation of the molecular known and distinct distal myopathies, using a simple basis of speciÞ c conditions, additional clues have been classification: distal myopathies with known molecular uncovered to understand the mechanism of each condition. defects [Table 1] and distal myopathies with unknown This review will give a synopsis of the common distal causative genes [Table 2]. The identification of the myopathies, presenting salient facts regarding the clinical, genes involved in distal myopathies has broadened pathological, and molecular aspects of each disease. Distal this classification into sub-categories as to the location myopathy with rimmed vacuoles, or Nonaka myopathy, will of encoded proteins: sarcomere (titin, myosin); plasma be discussed in more detail. -
Supp Table 6.Pdf
Supplementary Table 6. Processes associated to the 2037 SCL candidate target genes ID Symbol Entrez Gene Name Process NM_178114 AMIGO2 adhesion molecule with Ig-like domain 2 adhesion NM_033474 ARVCF armadillo repeat gene deletes in velocardiofacial syndrome adhesion NM_027060 BTBD9 BTB (POZ) domain containing 9 adhesion NM_001039149 CD226 CD226 molecule adhesion NM_010581 CD47 CD47 molecule adhesion NM_023370 CDH23 cadherin-like 23 adhesion NM_207298 CERCAM cerebral endothelial cell adhesion molecule adhesion NM_021719 CLDN15 claudin 15 adhesion NM_009902 CLDN3 claudin 3 adhesion NM_008779 CNTN3 contactin 3 (plasmacytoma associated) adhesion NM_015734 COL5A1 collagen, type V, alpha 1 adhesion NM_007803 CTTN cortactin adhesion NM_009142 CX3CL1 chemokine (C-X3-C motif) ligand 1 adhesion NM_031174 DSCAM Down syndrome cell adhesion molecule adhesion NM_145158 EMILIN2 elastin microfibril interfacer 2 adhesion NM_001081286 FAT1 FAT tumor suppressor homolog 1 (Drosophila) adhesion NM_001080814 FAT3 FAT tumor suppressor homolog 3 (Drosophila) adhesion NM_153795 FERMT3 fermitin family homolog 3 (Drosophila) adhesion NM_010494 ICAM2 intercellular adhesion molecule 2 adhesion NM_023892 ICAM4 (includes EG:3386) intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)adhesion NM_001001979 MEGF10 multiple EGF-like-domains 10 adhesion NM_172522 MEGF11 multiple EGF-like-domains 11 adhesion NM_010739 MUC13 mucin 13, cell surface associated adhesion NM_013610 NINJ1 ninjurin 1 adhesion NM_016718 NINJ2 ninjurin 2 adhesion NM_172932 NLGN3 neuroligin -
The MOGE(S) Classification of Cardiomyopathy for Clinicians
JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY VOL. 64, NO. 3, 2014 ª 2014 BY THE AMERICAN COLLEGE OF CARDIOLOGY FOUNDATION ISSN 0735-1097/$36.00 PUBLISHED BY ELSEVIER INC. http://dx.doi.org/10.1016/j.jacc.2014.05.027 THE PRESENT AND FUTURE STATE-OF-THE-ART REVIEW The MOGE(S) Classification of Cardiomyopathy for Clinicians Eloisa Arbustini, MD,* Navneet Narula, MD,y Luigi Tavazzi, MD, PHD,z Alessandra Serio, MD, PHD,* Maurizia Grasso, BD, PHD,* Valentina Favalli, PHD,* Riccardo Bellazzi, ME, PHD,x Jamil A. Tajik, MD,k Robert O. Bonow, MD,{ Valentin Fuster, MD, PHD,# Jagat Narula, MD, PHD# ABSTRACT Most cardiomyopathies are familial diseases. Cascade family screening identifies asymptomatic patients and family members with early traits of disease. The inheritance is autosomal dominant in a majority of cases, and recessive, X-linked, or matrilinear in the remaining. For the last 50 years, cardiomyopathy classifications have been based on the morphofunctional phenotypes, allowing cardiologists to conveniently group them in broad descriptive categories. However, the phenotype may not always conform to the genetic characteristics, may not allow risk stratification, and may not provide pre-clinical diagnoses in the family members. Because genetic testing is now increasingly becoming a part of clinical work-up, and based on the genetic heterogeneity, numerous new names are being coined for the description of cardiomyopathies associated with mutations in different genes; a comprehensive nosology is needed that could inform the clinical phenotype and -
Blueprint Genetics Epidermolysis Bullosa Panel
Epidermolysis Bullosa Panel Test code: DE0301 Is a 26 gene panel that includes assessment of non-coding variants. Is ideal for patients with a clinical suspicion of congenital epidermolysis bullosa. About Epidermolysis Bullosa Epidermolysis bullosa (EB) is a group of inherited diseases that are characterised by blistering lesions on the skin and mucous membranes, most commonly appearing at sites of friction and minor trauma such as the feet and hands. In some subtypes, blisters may also occur on internal organs, such as the oesophagus, stomach and respiratory tract, without any apparent friction. There are 4 major types of EB based on different sites of blister formation within the skin structure: Epidermolysis bullosa simplex (EBS), Junctional epidermolysis bullosa (JEB), Dystrophic epidermolysis bullosa (DEB), and Kindler syndrome (KS). EBS is usually characterized by skin fragility and rarely mucosal epithelia that results in non-scarring blisters caused by mild or no trauma. The four most common subtypes of EBS are: 1) localized EBS (EBS-loc; also known as Weber-Cockayne type), 2) Dowling-Meara type EBS (EBS-DM), 3) other generalized EBS(EBS, gen-nonDM; also known as Koebner type) and 4) EBS-with mottled pigmentation (EBS-MP). Skin biopsy from fresh blister is considered mandatory for diagnostics of generalized forms of EBS. The prevalence of EBS is is estimated to be 1:30,000 - 50,000. EBS-loc is the most prevalent, EBS- DM and EBS-gen-nonDM are rare, and EBS-MP is even rarer. Penetrance is 100% for known KRT5 and KRT14 mutations. Location of the mutations within functional domains of KRT5and KRT14 has shown to predict EBS phenotype. -
The Role of Genetics in Cardiomyopaties: a Review Luis Vernengo and Haluk Topaloglu
Chapter The Role of Genetics in Cardiomyopaties: A Review Luis Vernengo and Haluk Topaloglu Abstract Cardiomyopathies are defined as disorders of the myocardium which are always associated with cardiac dysfunction and are aggravated by arrhythmias, heart failure and sudden death. There are different ways of classifying them. The American Heart Association has classified them in either primary or secondary cardiomyopathies depending on whether the heart is the only organ involved or whether they are due to a systemic disorder. On the other hand, the European Society of Cardiology has classified them according to the different morphological and functional phenotypes associated with their pathophysiology. In 2013 the MOGE(S) classification started to be published and clinicians have started to adopt it. The purpose of this review is to update it. Keywords: cardiomyopathy, primary and secondary cardiomyopathies, sarcomeric genes 1. Introduction Cardiomyopathies can be defined as disorders of the myocardium associated with cardiac dysfunction and which are aggravated by arrhythmias, heart failure and sudden death [1]. The aim of this chapter is focused on updating and reviewing cardiomyopathies. In 1957, Bridgen coined the word “cardiomyopathy” for the first time and in 1958, the British pathologist Teare reported nine cases of septum hypertrophy [2]. Genetics has played a key role in the understanding of these disorders. In general, the overall prevalence of cardiomyopathies in the world population is 3%. The genetic forms of cardiomyopathies are characterized by both locus and allelic heterogeneity. The mutations of the genes which encode for a variety of proteins of the sarcomere, cytoskeleton, nuclear envelope, sarcolemma, ion channels and intercellular junctions alter many pathways and cellular structures affecting in a negative form the mechanism of muscle contraction and its function, and the sensi- tivity of ion channels to electrolytes, calcium homeostasis and how mechanic force in the myocardium is generated and transmitted [3, 4]. -
Manifestations of Zaspopathy in Skeletal Muscle, Peripheral Nerves, and Heart
East African Scholars Journal of Medical Sciences Abbreviated Key Title: East African Scholars J Med Sci ISSN 2617-4421 (Print) | ISSN 2617-7188 (Online) | Published By East African Scholars Publisher, Kenya Volume-2 | Issue-9| Sept -2019 | DOI: 10.36349/EASJMS.2019.v02i09.020 Letter to the Editor Manifestations of Zaspopathy in Skeletal Muscle, Peripheral Nerves, and Heart Finsterer J, MD, PhD 1Krankenanstalt Rudolfstiftung, Messerli Institute, Vienna, Austria *Corresponding Author Josef Finsterer, MD, PhD Keywords: electromyography (EMG), ZASP, myotilin, B-crystallin, hypertrabeculation / noncompaction. In a recent article, Selcen and Engel’s reported Was affection of family members defined upon about 11 patients with Zaspopathy, presenting with neurologic, cardiac or genetic findings? Concerning distal, proximal, or diffuse muscle weakness (n=11), ZASP expression in the brain it is worthwhile to present cardiac involvement (n=3), or neuropathy (n=5) results of imaging studies and to report if there was (Selcen, D., & Engel, A.G. 2005). We have the clinical evidence of encephalopathy. following comments and concerns: Cardiologic findings are only scarcely How can one be sure about peripheral nerve presented and definition of cardiac involvement is involvement when assessed only by electromyography lacking. Was history, clinical examination, ECG, 24h- (EMG) and not by nerve-conduction-studies? A ECG, and echocardiography carried out in all patients, neuropathic EMG may also occur in a myopathic which abnormalities did the authors look for, and which patient (Zalewska, E. et al., 2004). Which are the were the results? Did any of the patients have unequivocal, clinical and histological features of hypertrophic, dilative, or restrictive cardiomyopathy neuropathy that 5 patients had peripheral nerve (Vatta, M. -
ICNMD XIII 13Th International Congress on Neuromuscular
ICNMD XIII 13th International congress on Neuromuscular Diseases Nice, France July 5-10, 2014 Plenaries Sessions Abstract Books Journal of Neuromuscular Diseases 1 (2014) S3–S79 S3 DOI 10.3233/JND-149001 IOS Press Abstracts PLENARY SESSION 01 branched phenotype has been reported in vivo in mdx Theme: BASIC SCIENCES, MUSCLE AND NERVE DEVELOP- animals or in Duchenne patients, it has been attributed MENT to fusion defects consequent to the cycles of regenera- tion occurring in dystrophic muscles. Our results rath- PL1.1 Modelling Duchenne Dystrophy er argue that the defect is intrinsic to the fi bers thus challenging current views on the origin of the pathol- with embryonic stem cells ogy of Duchenne Muscular Dystrophy. Olivier POURQUIE, Strasbourg (France) Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), CNRS (UMR 7104), Inserm PLENARY SESSION 01 U964, Université de Strasbourg, Illkirch. F-67400, Theme: BASIC SCIENCES, MUSCLE AND NERVE DEVELOP- France. MENT Whereas the in vitro differentiation of certain lin- eages such as cardiomyocytes or neurons from plu- PL1.2 Regulation of Muscle Satellite ripotent cells is now well mastered, the production of Cells other clinically relevant ones such as skeletal muscle Margaret Buckingham, Paris (France) remains notoriously diffi cult. During embryonic de- Department of Developmental Biology and Stem velopment, skeletal muscles arise from somites, Cells, CNRS URA 2578, Institut Pasteur, 25–28 Rue which derive from the presomitic mesoderm (PSM). du Dr Roux, Paris 75015, France. Based on our understanding of PSM development, we established conditions allowing effi cient differentia- Adult skeletal muscle homeostasis and regeneration tion of monolayer cultures of mouse embryonic stem relies on satellite cells. -
Phd-Thesis Gernot Walko Final Version
DISSERTATION Titel der Dissertation Functions of plectin and its isoforms assessed in mouse stratified epithelia and keratinocyte cell cultures angestrebter akademischer Grad Doktor der Naturwissenschaften (Dr. rer.nat.) Verfasserin / Verfasser: Mag. Gernot Walko Matrikel-Nummer: 9607581 Dissertationsgebiet Molekulare Biologie (lt. Studienblatt): Betreuerin / Betreuer: Univ.-Prof. Dr. Gerhard Wiche Wien, am 10.12.2007 In der Wissenschaft gleichen wir alle nur den Kindern, die am Rande des Wissens hie und da einen Kiesel aufheben, während sich der weite Ozean des Unbekannten vor unseren Augen erstreckt. Isaac Newton (1643-1727), engl. Physiker, Mathematiker u. Astronom DANKSAGUNG I DANKSAGUNG Auf fast 200 Seiten – prallvoll mit Wissen und Wissenschaft – sollte man die Einflüsse vieler kluger Leute erwarten, und so ist es auch. Im Einzelnen danke ich: Prof. Dr. Gerhard Wiche für ein spannendes Dissertationsgebiet, viele interessante Diskussionen und viel Freiheit beim Forschen. Dr. Kerstin Andrä-Marobela für das Lehren von Allem was für die Wissenschaft von Bedeutung ist, inklusive dem Durchsetzen des eigenen Sturkopfes. Prof. Dr. Roland Foisner und Prof. Dr. Milos Pekny für das Lesen und Beurteilen einer sehr dicken Dissertation. Prof. Dr. Fritz Propst und Dr. Christina Abrahamsberg für ihr Mentoring, inklusive Schulterklopfen, Aufmuntern und vieler langer Gespräche bei vielen Tassen Kaffee. Prof. Dr. Fritz Pittner für so manch aufmunterndes Wort. Prof. Dr. Matthias Schmuth für das weltumspannende Verschicken kostbarer Messgeräte und das Beisteuern guter Ideen. Prof. Dr. Thomas Marlovits und Dr. Philip Zeller für die Benützung einer wunderbaren Maschine zum Auseinanderdehnen von Zellen. Prof. Dr. Milos Pekny für aufmunternde Worte wann und wo wir uns auch immer begegnet sind. Dr. Peter Fuchs für das Lehren vom richtigen Umgang mit kleinen (bissigen) Nagetieren.