Polyamine Distribution Profiles in Unicellular and Multicellular Red Algae
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Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Shorezone Coastal Habitat Mapping Data Summary Report Northwest
CORI Project: 12-27 September 2013 ShoreZone Coastal Habitat Mapping Data Summary Report Northwest Alaska Survey Area Prepared for: NOAA National Marine Fisheries Service, Alaska Region Prepared by: COASTAL & OCEAN RESOURCES ARCHIPELAGO MARINE RESEARCH LTD 759A Vanalman Ave., Victoria BC V8Z 3B8 Canada 525 Head Street, Victoria BC V9A 5S1 Canada (250) 658-4050 (250) 383-4535 www.coastalandoceans.com www.archipelago.ca September 2013 Northwest Alaska Summary (NOAA) 2 SUMMARY ShoreZone is a coastal habitat mapping and classification system in which georeferenced aerial imagery is collected specifically for the interpretation and integration of geological and biological features of the intertidal zone and nearshore environment. The mapping methodology is summarized in Harney et al (2008). This data summary report provides information on geomorphic and biological features of 4,694 km of shoreline mapped for the 2012 survey of Northwest Alaska. The habitat inventory is comprised of 3,469 along-shore segments (units), averaging 1,353 m in length (note that the AK Coast 1:63,360 digital shoreline shows this mapping area encompassing 3,095 km, but mapping data based on better digital shorelines represent the same area with 4,694 km stretching along the coast). Organic/estuary shorelines (such as estuaries) are mapped along 744.4 km (15.9%) of the study area. Bedrock shorelines (Shore Types 1-5) are extremely limited along the shoreline with only 0.2% mapped. Close to half of the shoreline is classified as Tundra (44.3%) with low, vegetated peat the most commonly occurring tundra shore type. Approximately a third (34.1%) of the mapped coastal environment is characterized as sediment-dominated shorelines (Shore Types 21-30). -
Is the Red Alga Meristotheca Papulosa Annual? -Monitoring Of
Aquacult. Sci. 67(1),49-56(2019) Is the red alga Meristotheca papulosa annual? - Monitoring of tagged thalli at Banda, Tateyama, Central Pacific coast of Japan- 1,* 1, 2 1 1 Boryuan CHEN , Shingo AKITA , Akito UEHARA and Daisuke FUJITA Abstract: Meristotheca papulosa is a commercially important red alga used for human consumption. It has been reported as an annual species in Kagoshima Prefecture but has been suggested to be perennial in Kochi Prefecture. In the present study, thalli were indirectly monitored at Banda, Chiba Prefecture. A caged culture and feeding test recording were also conducted. Among the nine thalli tagged in March or April 2016, three survived the winter but disappeared in July 2017. After reaching a maximum length in May, the thallus size decreased from June to November 2016. However, the thalli began to regrow in December 2016. Bite marks were common on the thalli; appearance of herbivorous fishes was recorded by the interval camera. An in-situ culture was conducted by transplanting six thalli each inside and outside of a cage from March to October 2016. After reaching the maximum weight in June, thalli located outside of the cage disappeared in July, but those located inside of the cage survived until September. Aplysia parvula, which was able to intrude the cage, were noted to be influential grazers on the thalli. These results suggest that M. papulosa is perennial but its longevity is affected by wave action and grazing. Key words: Meristotheca papulosa; Perennial; Caging; Grazer were Kagoshima Prefecture in Kyushu (250 to Introduction 300 tons/year) and Izu Islands on the central Pacific coast of Japan (200 to 300 tons/year) Meristotheca papulosa (Montagne) J. -
Mannitol Biosynthesis in Algae : More Widespread and Diverse Than Previously Thought
This is a repository copy of Mannitol biosynthesis in algae : more widespread and diverse than previously thought. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/113250/ Version: Accepted Version Article: Tonon, Thierry orcid.org/0000-0002-1454-6018, McQueen Mason, Simon John orcid.org/0000-0002-6781-4768 and Li, Yi (2017) Mannitol biosynthesis in algae : more widespread and diverse than previously thought. New Phytologist. pp. 1573-1579. ISSN 1469-8137 https://doi.org/10.1111/nph.14358 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 Mannitol biosynthesis in algae: more widespread and diverse than previously thought. Thierry Tonon1,*, Yi Li1 and Simon McQueen-Mason1 1 Department of Biology, Centre for Novel Agricultural Products, University of York, Heslington, York, YO10 5DD, UK. * Author for correspondence: tel +44 1904328785; email [email protected] Key words: Algae, primary metabolism, mannitol biosynthesis, mannitol-1-phosphate dehydrogenase, mannitol-1-phosphatase, haloacid dehalogenase, histidine phosphatase, evolution of metabolic pathways. -
The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum Within Green Plants
Downloaded from orbit.dtu.dk on: Oct 10, 2021 The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng Total number of authors: 24 Published in: Nature Ecology & Evolution Link to article, DOI: 10.1038/s41559-020-1221-7 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., ... Liu, H. (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution, 4, 1220-1231. https://doi.org/10.1038/s41559-020-1221-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Proposal for Practical Multi-Kingdom Classification of Eukaryotes Based on Monophyly 2 and Comparable Divergence Time Criteria
bioRxiv preprint doi: https://doi.org/10.1101/240929; this version posted December 29, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Proposal for practical multi-kingdom classification of eukaryotes based on monophyly 2 and comparable divergence time criteria 3 Leho Tedersoo 4 Natural History Museum, University of Tartu, 14a Ravila, 50411 Tartu, Estonia 5 Contact: email: [email protected], tel: +372 56654986, twitter: @tedersoo 6 7 Key words: Taxonomy, Eukaryotes, subdomain, phylum, phylogenetic classification, 8 monophyletic groups, divergence time 9 Summary 10 Much of the ecological, taxonomic and biodiversity research relies on understanding of 11 phylogenetic relationships among organisms. There are multiple available classification 12 systems that all suffer from differences in naming, incompleteness, presence of multiple non- 13 monophyletic entities and poor correspondence of divergence times. These issues render 14 taxonomic comparisons across the main groups of eukaryotes and all life in general difficult 15 at best. By using the monophyly criterion, roughly comparable time of divergence and 16 information from multiple phylogenetic reconstructions, I propose an alternative 17 classification system for the domain Eukarya to improve hierarchical taxonomical 18 comparability for animals, plants, fungi and multiple protist groups. Following this rationale, 19 I propose 32 kingdoms of eukaryotes that are treated in 10 subdomains. These kingdoms are 20 further separated into 43, 115, 140 and 353 taxa at the level of subkingdom, phylum, 21 subphylum and class, respectively (http://dx.doi.org/10.15156/BIO/587483). -
UNDERSTANDING the GENOMIC BASIS of STRESS ADAPTATION in PICOCHLORUM GREEN ALGAE by FATIMA FOFLONKER a Dissertation Submitted To
UNDERSTANDING THE GENOMIC BASIS OF STRESS ADAPTATION IN PICOCHLORUM GREEN ALGAE By FATIMA FOFLONKER A dissertation submitted to the School of Graduate Studies Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Microbial Biology Written under the direction of Debashish Bhattacharya And approved by _________________________________________________ _________________________________________________ _________________________________________________ _________________________________________________ New Brunswick, New Jersey January 2018 ABSTRACT OF THE DISSERTATION Understanding the Genomic Basis of Stress Adaptation in Picochlorum Green Algae by FATIMA FOFLONKER Dissertation Director: Debashish Bhattacharya Gaining a better understanding of adaptive evolution has become increasingly important to predict the responses of important primary producers in the environment to climate-change driven environmental fluctuations. In my doctoral research, the genomes from four taxa of a naturally robust green algal lineage, Picochlorum (Chlorophyta, Trebouxiphycae) were sequenced to allow a comparative genomic and transcriptomic analysis. The over-arching goal of this work was to investigate environmental adaptations and the origin of haltolerance. Found in environments ranging from brackish estuaries to hypersaline terrestrial environments, this lineage is tolerant of a wide range of fluctuating salinities, light intensities, temperatures, and has a robust photosystem II. The small, reduced diploid genomes (13.4-15.1Mbp) of Picochlorum, indicative of genome specialization to extreme environments, has resulted in an interesting genomic organization, including the clustering of genes in the same biochemical pathway and coregulated genes. Coregulation of co-localized genes in “gene neighborhoods” is more prominent soon after exposure to salinity shock, suggesting a role in the rapid response to salinity stress in Picochlorum. -
Prevalent Ph Controls the Capacity of Galdieria Maxima to Use Ammonia and Nitrate As a Nitrogen Source
plants Article Prevalent pH Controls the Capacity of Galdieria maxima to Use Ammonia and Nitrate as a Nitrogen Source Manuela Iovinella 1 , Dora Allegra Carbone 2, Diana Cioppa 2, Seth J. Davis 1,3 , Michele Innangi 4 , Sabrina Esposito 4 and Claudia Ciniglia 4,* 1 Department of Biology, University of York, York YO105DD, UK; [email protected] (M.I.); [email protected] (S.J.D.) 2 Department of Biology, University of Naples Federico II, 80126 Naples, Italy; [email protected] (D.A.C.); [email protected] (D.C.) 3 Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng 475004, China 4 Department of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania “L. Vanvitelli”, 81100 Caserta, Italy; [email protected] (M.I.); [email protected] (S.E.) * Correspondence: [email protected] Received: 7 October 2019; Accepted: 29 January 2020; Published: 11 February 2020 Abstract: Galdieria maxima is a polyextremophilic alga capable of diverse metabolic processes. Ammonia is widely used in culture media typical of laboratory growth. Recent reports that this species can grow on wastes promote the concept that G. maxima might have biotechnological utility. Accordingly, there is a need to know the range of pH levels that can support G. maxima growth in a given nitrogen source. Here, we examined the combined effect of pH and nitrate/ammonium source on the growth and long-term response of the photochemical process to a pH gradient in different G. maxima strains. All were able to use differing nitrogen sources, despite both the growth rate and photochemical activity were significantly affected by the combination with the pH. -
Diversity and Evolution of Algae: Primary Endosymbiosis
CHAPTER TWO Diversity and Evolution of Algae: Primary Endosymbiosis Olivier De Clerck1, Kenny A. Bogaert, Frederik Leliaert Phycology Research Group, Biology Department, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium 1Corresponding author: E-mail: [email protected] Contents 1. Introduction 56 1.1. Early Evolution of Oxygenic Photosynthesis 56 1.2. Origin of Plastids: Primary Endosymbiosis 58 2. Red Algae 61 2.1. Red Algae Defined 61 2.2. Cyanidiophytes 63 2.3. Of Nori and Red Seaweed 64 3. Green Plants (Viridiplantae) 66 3.1. Green Plants Defined 66 3.2. Evolutionary History of Green Plants 67 3.3. Chlorophyta 68 3.4. Streptophyta and the Origin of Land Plants 72 4. Glaucophytes 74 5. Archaeplastida Genome Studies 75 Acknowledgements 76 References 76 Abstract Oxygenic photosynthesis, the chemical process whereby light energy powers the conversion of carbon dioxide into organic compounds and oxygen is released as a waste product, evolved in the anoxygenic ancestors of Cyanobacteria. Although there is still uncertainty about when precisely and how this came about, the gradual oxygenation of the Proterozoic oceans and atmosphere opened the path for aerobic organisms and ultimately eukaryotic cells to evolve. There is a general consensus that photosynthesis was acquired by eukaryotes through endosymbiosis, resulting in the enslavement of a cyanobacterium to become a plastid. Here, we give an update of the current understanding of the primary endosymbiotic event that gave rise to the Archaeplastida. In addition, we provide an overview of the diversity in the Rhodophyta, Glaucophyta and the Viridiplantae (excluding the Embryophyta) and highlight how genomic data are enabling us to understand the relationships and characteristics of algae emerging from this primary endosymbiotic event. -
Cyanidium Chilense (Cyanidiophyceae, Rhodophyta) from Tuff Rocks of the Archeological Site of Cuma, Italy
Phycological Research 2019 doi: 10.1111/pre.12383 ........................................................................................................................................................................................... Cyanidium chilense (Cyanidiophyceae, Rhodophyta) from tuff rocks of the archeological site of Cuma, Italy Claudia Ciniglia ,1* Paola Cennamo,2 Antonino De Natale,3 Mario De Stefano,1 Maria Sirakov,1 Manuela Iovinella,4 Hwan S. Yoon5 and Antonino Pollio3 1Department of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania “L. Vanvitelli”, Caserta, Italy, 2Department of Biology, Facolta` di Lettere, Universita` degli Studi ‘Suor Orsola Benincasa’, Naples, Italy, 3Department of Biology, University of Naples Federico II, Naples, Italy, 4Department of Biology, University of York, York, UK and 5Department of Biological Sciences, Sungkyunkwan University, Seoul, South Korea ........................................................................................ thermal (35–55C) soils, retrieved from hot springs and fuma- SUMMARY roles, worldwide (Ciniglia et al. 2014; Eren et al. 2018; Iovinella et al. 2018); C. chilense, formerly ‘cave Cyanidium’ Phlegrean Fields is a large volcanic area situated southwest of (Hoffmann 1994), is a neutrophilic (pH around 7.0) and mes- Naples (Italy), including both cave and thermoacidic habitats. ophilic (20–25C) strain isolated by several authors from These extreme environments host the genus Cyanidium; the caves, considered as extreme environments, -
Evolutionary History of the Monospecificcompsopogon Genus (Compsopogonales, Rhodophyta)
Research Article Algae 2016, 31(4): 303-315 https://doi.org/10.4490/algae.2016.31.10.22 Open Access Evolutionary history of the monospecific Compsopogon genus (Compsopogonales, Rhodophyta) Fangru Nan, Jia Feng, Junping Lv, Qi Liu and Shulian Xie* School of Life Science, Shanxi University, Taiyuan 030006, China Compsopogon specimens collected in China were examined based on morphology and DNA sequences. Five molecu- lar markers from different genome compartments including rbcL, COI, 18S rDNA, psbA, and UPA were identified and used to construct a phylogenetic relationship. Phylogenetic analyses indicated that two different morphological types from China clustered into an independent clade with Compsopogon specimens when compared to other global samples. The Compsopogon clade exhibited robust support values, revealing the affiliation of the samples toCompsopogon cae- ruleus. Although the samples were distributed in a close geographical area, unexpected sequence divergences between the Chinese samples implied that they were introduced by different dispersal events and from varied origins. It was speculated that Compsopogon originated in North America, a portion of the Laurentia landmass situated in the Rodinia supercontinent at approximately 573.89-1,701.50 million years ago during the Proterozoic era. Although Compsopogon had evolved for a rather long time, genetic conservation had limited its variability and rate of evolution, resulting in the current monospecific global distribution. Additional global specimens and sequence information were required to in- crease our understanding of the evolutionary history of this ancient red algal lineage. Key Words: Compsopogon; divergence time; geographic origin; molecular analysis; morphology; phylogenetic relationship INTRODUCTION Compsopogon Montagne 1846 is a typical Rhodophyta tics are widely variable both within and among popula- algal genus that inhabits freshwater and is globally dis- tions and with different environmental factors (Necchi et tributed (Kumanoa 2002). -
Phylogenomic Analysis of Transcriptomic Sequences Of
Acta Oceanol. Sin., 2014, Vol. 33, No. 2, P. 86–93 DOI: 10.1007/s13131-014-0444-3 http://www.hyxb.org.cn E-mail: [email protected] Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China JIA Shangang1,3†, WANG Xumin1,3†, QIAN Hao2, LI Tianyong2, SUN Jing1,3,4, WANG Liang1,3,4, YU Jun1,3, LI Xingang1,3, YIN Jinlong1, LIU Tao2*, WU Shuangxiu1,3* 1 CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 2 College of Marine Life Science, Ocean University of China, Qingdao 266003, China 3 Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 4 University of Chinese Academy of Sciences, Beijing 100049, China Received 22 March 2013; accepted 2013 ©The Chinese Society of Oceanography and Springer-Verlag Berlin Heidelberg 2014 Abstract The chloroplast and mitochondrion of red algae (Phylum Rhodophyta) may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin- eages by using red algal RNA-seq datasets of the 1 000 Plants (1KP) Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci- lariales was in a clade of Order Ceramials.