Coronavirus Diseases (COVID-19) Current Status and Future Perspectives: a Narrative Review
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Genome Organization of Canada Goose Coronavirus, a Novel
www.nature.com/scientificreports OPEN Genome Organization of Canada Goose Coronavirus, A Novel Species Identifed in a Mass Die-of of Received: 14 January 2019 Accepted: 25 March 2019 Canada Geese Published: xx xx xxxx Amber Papineau1,2, Yohannes Berhane1, Todd N. Wylie3,4, Kristine M. Wylie3,4, Samuel Sharpe5 & Oliver Lung 1,2 The complete genome of a novel coronavirus was sequenced directly from the cloacal swab of a Canada goose that perished in a die-of of Canada and Snow geese in Cambridge Bay, Nunavut, Canada. Comparative genomics and phylogenetic analysis indicate it is a new species of Gammacoronavirus, as it falls below the threshold of 90% amino acid similarity in the protein domains used to demarcate Coronaviridae. Additional features that distinguish the genome of Canada goose coronavirus include 6 novel ORFs, a partial duplication of the 4 gene and a presumptive change in the proteolytic processing of polyproteins 1a and 1ab. Viruses belonging to the Coronaviridae family have a single stranded positive sense RNA genome of 26–31 kb. Members of this family include both human pathogens, such as severe acute respiratory syn- drome virus (SARS-CoV)1, and animal pathogens, such as porcine epidemic diarrhea virus2. Currently, the International Committee on the Taxonomy of Viruses (ICTV) recognizes four genera in the Coronaviridae family: Alphacoronavirus, Betacoronavirus, Gammacoronavirus and Deltacoronavirus. While the reser- voirs of the Alphacoronavirus and Betacoronavirus genera are believed to be bats, the Gammacoronavirus and Deltacoronavirus genera have been shown to spread primarily through birds3. Te frst three species of the Deltacoronavirus genus were discovered in 20094 and recent work has vastly expanded the Deltacoronavirus genus, adding seven additional species3. -
What You Need to Know About 2019 Novel Coronavirus (2019- Ncov) Update
WHAT YOU NEED TO KNOW ABOUT 2019 NOVEL CORONAVIRUS (2019- NCOV) UPDATE. Dr. Ziba Hooshdaran 2019 Novel Coronavirus (COVID-19) INDEX Viral Structures MERS coronavirus (MERS- CoV) Coronavirus 2019- nCOV, Or COVID- Characteristics 19 History Source of COVID-19 How 2019-nCoV Spreads Replication COVID-19 VS Flu Infection Symptoms Disease caused by Diagnostic coronaviruses Prevention SARS coronavirus Treatment (SARS-CoV) References GENERAL CHARACTERISTICS OF VIRUS Obligate intracellular parasites (are completely inert when not in a host cell) very small Acellular Viruses cannot replicate without a host cell. Multiply inside living cells by using the cell’s own molecular machinery. Diseases caused by viruses include Rabies, Herpes, and Ebola, HIV….. Most viruses infect only specific types of cells in one host As we can not use antibiotic for viruses, vaccination is thus the only feasible method of controlling viral disease CORONAVIRUS CHARACTERISTICS Coronaviruses are responsible for about a third of all common cold cases (rhinoviruses, adenoviruses, and also cause the common cold). Animal and human pathogens that can cause lethal zoonotic infections like SARS and MERS. The COVID-19 virus is a beta coronavirus, like MERS-CoV and SARS-CoV. All three of these viruses have their origins in bats. (CDC) Coronaviruses are large, lipid-enveloped, positive-sense, single-stranded RNA viruses. Kathryn V. Holmes, Ph.D. HISTORY Coronavirus disease was first described in 1931. The first coronavirus (HCoV-229E) isolated from humans in 1965 and is responsible for the common cold By 2002 only two human coronaviruses (HCoV) were known – HCoV-229E and HCoV-OC43. Severe acute respiratory syndrome (SARS-CoV) in late 2002. -
Coronaviruses and SARS-COV-2
Turkish Journal of Medical Sciences Turk J Med Sci (2020) 50: 549-556 http://journals.tubitak.gov.tr/medical/ © TÜBİTAK Review Article doi:10.3906/sag-2004-127 Coronaviruses and SARS-COV-2 1 2, 3 Mustafa HASÖKSÜZ , Selcuk KILIÇ *, Fahriye SARAÇ 1 Department of Virology, Faculty of Veterinary Medicine, Istanbul University-Cerrahpaşa, İstanbul, Turkey 2 Microbiology Reference Lab and Biological Products Department, General Directorate of Public Health Department, Republic of Turkey Ministry of Health, Ankara, Turkey 3 Pendik Veterinary Control Institute, İstanbul, Turkey Received: 12.04.2020 Accepted/Published Online: 14.04.2020 Final Version: 21.04.2020 Abstract: Coronaviruses (CoVs) cause a broad spectrum of diseases in domestic and wild animals, poultry, and rodents, ranging from mild to severe enteric, respiratory, and systemic disease, and also cause the common cold or pneumonia in humans. Seven coronavirus species are known to cause human infection, 4 of which, HCoV 229E, HCoV NL63, HCoV HKU1 and HCoV OC43, typically cause cold symptoms in immunocompetent individuals. The others namely SARS-CoV (severe acute respiratory syndrome coronavirus), MERS-CoV (Middle East respiratory syndrome coronavirus) were zoonotic in origin and cause severe respiratory illness and fatalities. On 31 December 2019, the existence of patients with pneumonia of an unknown aetiology was reported to WHO by the national authorities in China. This virus was officially identified by the coronavirus study group as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and the present outbreak of a coronavirus-associated acute respiratory disease was labelled coronavirus disease 19 (COVID-19). COVID-19’s first cases were seen in Turkey on March 10, 2020 and was number 47,029 cases and 1006 deaths after 1 month. -
Downloads/Prep-And-Admin-Summary.Pdf (Accessed on 161
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 23 February 2021 doi:10.20944/preprints202102.0530.v1 Review An update of coronavirus disease 2019 (COVID-19): an essen- tial brief for clinicians Afshin Zare1, Seyyede Fateme Sadati-Seyyed-Mahalle1, Amirhossein Mokhtari1, Nima Pakdel1, Zeinab Hamidi1, Sahar Almasi-Turk2, Neda Baghban1, Arezoo Khoradmehr1, Iraj Nabipour1, Mohammad Amin Behzadi3,*, Amin Tamadon1,* 1 The Persian Gulf Marine Biotechnology Research Center, The Persian Gulf Biomedical Sciences Research Institute, Bushehr University of Medical Sciences, Bushehr, Iran; [email protected] (AZ), [email protected] (SFS), [email protected] (AM), [email protected] (NP), [email protected] (ZH), [email protected] (NB), [email protected] (AK), inabi- [email protected] (IN), [email protected] (AT) 2 Department of Basic Sciences, School of Medicine, Bushehr University of Medical Sciences, Bushehr, Iran; [email protected] (SA) 3 Department of Vaccine Discovery, Auro Vaccines LLC, Pearl River, New York, United State; mbehzadi@au- rovaccines.com (MAB) * Correspondences: [email protected] (AT) and [email protected] (MAB); Tel.: +98-77- 3332-8724 Abstract: During 2019, the number of patients suffering from cough, fever and reduction of WBC’s count increased. At the beginning, this mysterious illness was called “fever with unknown origin”. At the present time, the cause of this pneumonia is known as the 2019 novel coronavirus (2019- nCoV) or the severe acute respiratory syndrome corona virus 2 (SARS-CoV-2). The SARS-CoV-2 is one member of great family of coronaviruses. Coronaviruses can cause different kind of illnesses including respiratory, enteric, hepatic, and neurological diseases in animals like cat and bat. -
Assessment of Awareness and Knowledge on Novel Coronavirus (COVID-19) Pandemic Among Seafarers
healthcare Article Assessment of Awareness and Knowledge on Novel Coronavirus (COVID-19) Pandemic among Seafarers Gopi Battineni 1,* , Getu Gamo Sagaro 1 , Nalini Chintalapudi 1 , Marzio Di Canio 2 and Francesco Amenta 1,2 1 Telemedicine and Telepharmacy Centre, School of Medicinal and Health Products Sciences, University of Camerino, 62032 Camerino, Italy; [email protected] (G.G.S.); [email protected] (N.C.); [email protected] (F.A.) 2 Research Department, Centro Internationale Radio Medico (C.I.R.M), 00144 Rome, Italy; [email protected] * Correspondence: [email protected]; Tel.: +39-3331728206 Abstract: Background: The ongoing pandemic due to the novel coronavirus (COVID-19) is becoming a serious global threat. Experts suggest that the infection can be controlled by immediate prevention measures. Sailing is one of the occupational categories more vulnerable to this virus outbreak due to the proximity of the working conditions. Objective: Awareness and knowledge assessments of seafarers towards the current epidemic is mandatory to understand the effectiveness and success of the infection control measures adopted by shipping companies. Methods: In this study, we presented an online questionnaire survey to determine the knowledge levels of COVID-19 among seafarers. The data were collected by self-reported survey, and analysis was done by the analysis of variance (ANOVA). The t-test was used to understand the knowledge attitude differences to COVID-19 among different occupational groups of seafarers, and the p-value ≤ of 0.05 was considered statistically significant. Results: Among 1,458 responses received, 92.82% had a college or university degree. Citation: Battineni, G.; Sagaro, G.G.; The results reported that the mean COVID-19 knowledge score was 5.82 (standard deviation = 0.51, Chintalapudi, N.; Di Canio, M.; Amenta, F. -
Swine Enteric Coronavirus Diseases Monitoring And
APHIS Factsheet Veterinary Services January 2016 Q. How quickly do I need to report an affected Questions & herd? A. An affected herd must be reported as soon as Answers: Swine you know the herd is infected, whether through positive laboratory test results or other knowledge Enteric Coronavirus of infection. Diseases Monitoring Q. How do I report an affected herd? A. Report affected herds through existing channels and Control Program to the USDA Assistant Director or the state animal health official. Laboratories will also submit their In response to the significant impact swine reports through the Laboratory Messaging System. enteric coronavirus diseases (SECD), including Porcine Epidemic Diarrhea (PEDv) and Porcine Q. Is the data reported to USDA secure and deltacoronavirus (PDCoV), are having on the U.S. confidential? pork industry, USDA issued a Federal Order on A. Yes. USDA will use all applicable authorities to June 5, 2014. USDA also announced $26.2 million protect information it collects. in emergency funding to combat these diseases. On January 4, 2016, the United States Department Q. Is it subject to FOIA? of Agriculture’s (USDA) Animal and Plant Health A. USDA will seek to protect producer information Inspection Service (APHIS) issued a revised Federal to the fullest extent of the law. Order to more effectively use remaining emergency funding. Herd Management Plans The revised Federal Order eliminates the herd plan requirement, as well as reimbursement to Q. Is USDA requiring herd management plans? veterinarians for completing those plans. It also A. No, the revised Federal Order, issued January eliminates reimbursement for biosecurity actions, like 4, 2016, eliminated the herd plan requirement. -
The COVID-19 Pandemic: a Comprehensive Review of Taxonomy, Genetics, Epidemiology, Diagnosis, Treatment, and Control
Journal of Clinical Medicine Review The COVID-19 Pandemic: A Comprehensive Review of Taxonomy, Genetics, Epidemiology, Diagnosis, Treatment, and Control Yosra A. Helmy 1,2,* , Mohamed Fawzy 3,*, Ahmed Elaswad 4, Ahmed Sobieh 5, Scott P. Kenney 1 and Awad A. Shehata 6,7 1 Department of Veterinary Preventive Medicine, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691, USA; [email protected] 2 Department of Animal Hygiene, Zoonoses and Animal Ethology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia 41522, Egypt 3 Department of Virology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia 41522, Egypt 4 Department of Animal Wealth Development, Faculty of Veterinary Medicine, Suez Canal University, Ismailia 41522, Egypt; [email protected] 5 Department of Radiology, University of Massachusetts Medical School, Worcester, MA 01655, USA; [email protected] 6 Avian and Rabbit Diseases Department, Faculty of Veterinary Medicine, Sadat City University, Sadat 32897, Egypt; [email protected] 7 Research and Development Section, PerNaturam GmbH, 56290 Gödenroth, Germany * Correspondence: [email protected] (Y.A.H.); [email protected] (M.F.) Received: 18 March 2020; Accepted: 21 April 2020; Published: 24 April 2020 Abstract: A pneumonia outbreak with unknown etiology was reported in Wuhan, Hubei province, China, in December 2019, associated with the Huanan Seafood Wholesale Market. The causative agent of the outbreak was identified by the WHO as the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), producing the disease named coronavirus disease-2019 (COVID-19). The virus is closely related (96.3%) to bat coronavirus RaTG13, based on phylogenetic analysis. -
Master Question List for COVID-19 (Caused by SARS-Cov-2) Weekly Report 18 March 2020
DHS SCIENCE AND TECHNOLOGY Master Question List for COVID-19 (caused by SARS-CoV-2) Weekly Report 18 March 2020 For comments or questions related to the contents of this document, please contact the DHS S&T Hazard Awareness & Characterization Technology Center at [email protected]. DHS Science and Technology Directorate | MOBILIZING INNOVATION FOR A SECURE WORLD CLEARED FOR PUBLIC RELEASE REQUIRED INFORMATION FOR EFFECTIVE INFECTIOUS DISEASE OUTBREAK RESPONSE SARS-CoV-2 (COVID-19) Updated 3/18/2020 FOREWORD The Department of Homeland Security (DHS) is paying close attention to the evolving Coronavirus Infectious Disease (COVID-19) situation in order to protect our nation. DHS is working very closely with the Centers for Disease Control and Prevention (CDC), other federal agencies, and public health officials to implement public health control measures related to travelers and materials crossing our borders from the affected regions. Based on the response to a similar product generated in 2014 in response to the Ebolavirus outbreak in West Africa, the DHS Science and Technology Directorate (DHS S&T) developed the following “master question list” that quickly summarizes what is known, what additional information is needed, and who may be working to address such fundamental questions as, “What is the infectious dose?” and “How long does the virus persist in the environment?” The Master Question List (MQL) is intended to quickly present the current state of available information to government decision makers in the operational response to COVID-19 and allow structured and scientifically guided discussions across the federal government without burdening them with the need to review scientific reports, and to prevent duplication of efforts by highlighting and coordinating research. -
Emergence of Novel Coronavirus 2019-Ncov: Need for Rapid Vaccine and Biologics Development
pathogens Review Emergence of Novel Coronavirus 2019-nCoV: Need for Rapid Vaccine and Biologics Development Balamurugan Shanmugaraj 1,2, Ashwini Malla 1,2 and Waranyoo Phoolcharoen 1,2,* 1 Research unit for Plant-produced Pharmaceuticals, Chulalongkorn University, Bangkok 10330, Thailand; [email protected] (B.S.); [email protected] (A.M.) 2 Department of Pharmacognosy and Pharmaceutical Botany, Chulalongkorn University, Bangkok 10330, Thailand * Correspondence: [email protected]; Tel.: 662-218-8359; Fax: 662-218-8357 Received: 11 February 2020; Accepted: 21 February 2020; Published: 22 February 2020 Abstract: Novel Coronavirus (2019-nCoV) is an emerging pathogen that was first identified in Wuhan, China in late December 2019. This virus is responsible for the ongoing outbreak that causes severe respiratory illness and pneumonia-like infection in humans. Due to the increasing number of cases in China and outside China, the WHO declared coronavirus as a global health emergency. Nearly 35,000 cases were reported and at least 24 other countries or territories have reported coronavirus cases as early on as February. Inter-human transmission was reported in a few countries, including the United States. Neither an effective anti-viral nor a vaccine is currently available to treat this infection. As the virus is a newly emerging pathogen, many questions remain unanswered regarding the virus’s reservoirs, pathogenesis, transmissibility, and much more is unknown. The collaborative efforts of researchers are needed to fill the knowledge gaps about this new virus, to develop the proper diagnostic tools, and effective treatment to combat this infection. Recent advancements in plant biotechnology proved that plants have the ability to produce vaccines or biopharmaceuticals rapidly in a short time. -
Virtual Screening of Anti-HIV1 Compounds Against SARS-Cov-2
www.nature.com/scientificreports OPEN Virtual screening of anti‑HIV1 compounds against SARS‑CoV‑2: machine learning modeling, chemoinformatics and molecular dynamics simulation based analysis Mahesha Nand1,6, Priyanka Maiti 2,6*, Tushar Joshi3, Subhash Chandra4*, Veena Pande3, Jagdish Chandra Kuniyal2 & Muthannan Andavar Ramakrishnan5* COVID‑19 caused by the SARS‑CoV‑2 is a current global challenge and urgent discovery of potential drugs to combat this pandemic is a need of the hour. 3‑chymotrypsin‑like cysteine protease (3CLpro) enzyme is the vital molecular target against the SARS‑CoV‑2. Therefore, in the present study, 1528 anti‑HIV1compounds were screened by sequence alignment between 3CLpro of SARS‑CoV‑2 and avian infectious bronchitis virus (avian coronavirus) followed by machine learning predictive model, drug‑likeness screening and molecular docking, which resulted in 41 screened compounds. These 41 compounds were re‑screened by deep learning model constructed considering the IC50 values of known inhibitors which resulted in 22 hit compounds. Further, screening was done by structural activity relationship mapping which resulted in two structural clefts. Thereafter, functional group analysis was also done, where cluster 2 showed the presence of several essential functional groups having pharmacological importance. In the fnal stage, Cluster 2 compounds were re‑docked with four diferent PDB structures of 3CLpro, and their depth interaction profle was analyzed followed by molecular dynamics simulation at 100 ns. Conclusively, 2 out of 1528 compounds were screened as potential hits against 3CLpro which could be further treated as an excellent drug against SARS‑CoV‑2. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is the causative agent of the COVID-19. -
Betacoronavirus Genomes: How Genomic Information Has Been Used to Deal with Past Outbreaks and the COVID-19 Pandemic
International Journal of Molecular Sciences Review Betacoronavirus Genomes: How Genomic Information Has Been Used to Deal with Past Outbreaks and the COVID-19 Pandemic Alejandro Llanes 1 , Carlos M. Restrepo 1 , Zuleima Caballero 1 , Sreekumari Rajeev 2 , Melissa A. Kennedy 3 and Ricardo Lleonart 1,* 1 Centro de Biología Celular y Molecular de Enfermedades, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City 0801, Panama; [email protected] (A.L.); [email protected] (C.M.R.); [email protected] (Z.C.) 2 College of Veterinary Medicine, University of Florida, Gainesville, FL 32610, USA; [email protected] 3 College of Veterinary Medicine, University of Tennessee, Knoxville, TN 37996, USA; [email protected] * Correspondence: [email protected]; Tel.: +507-517-0740 Received: 29 May 2020; Accepted: 23 June 2020; Published: 26 June 2020 Abstract: In the 21st century, three highly pathogenic betacoronaviruses have emerged, with an alarming rate of human morbidity and case fatality. Genomic information has been widely used to understand the pathogenesis, animal origin and mode of transmission of coronaviruses in the aftermath of the 2002–2003 severe acute respiratory syndrome (SARS) and 2012 Middle East respiratory syndrome (MERS) outbreaks. Furthermore, genome sequencing and bioinformatic analysis have had an unprecedented relevance in the battle against the 2019–2020 coronavirus disease 2019 (COVID-19) pandemic, the newest and most devastating outbreak caused by a coronavirus in the history of mankind. Here, we review how genomic information has been used to tackle outbreaks caused by emerging, highly pathogenic, betacoronavirus strains, emphasizing on SARS-CoV, MERS-CoV and SARS-CoV-2. -
Novel Coronavirus COVID-19: an Overview for Emergency Clinicians
EXTRA! SPECIAL REPORT :: COVID-19 FEBRUARY 2020 Novel Coronavirus COVID-19: An Overview for Emergency Clinicians AUTHORS 42-year-old man presents to your AL Giwa, LLB, MD, MBA, FACEP, FAAEM ED triage area with a high-grade Akash Desai, MD A fever (39.6°C [103.3°F]), cough, and fatigue for 1 week. He said that the week KEY POINTS prior he was at a conference in Shanghai • The mortality rate of COVID-19 appears and took a city bus tour with some peo- to be between 2% to 4%. This would make the COVID-19 the least deadly ple who were coughing excessively, and of the 3 most pathogenic human not all were wearing masks. The triage coronaviruses. nurses immediately recognize the risk, place a mask on the patient, place him • The relatively lower mortality rate of COVID-19 may be outweighed by its in a negative pressure room, and inform virulence. you that the patient is ready to be seen. You wonder what to do with the other 10 • 29% of the confirmed NCIP patients patients who were sitting near the pa- were active health professionals, and tient while he was waiting to be triaged 12.3% were hospitalized patients, suggesting an alarming 41% rate of and what you should do next... nosocomial spread. Save this supplement as your trusted reference on COVID-19, with the relevant links, major studies, authoritative websites, and useful resources you need. Introduction Coronaviruses earn their name from the characteristic crown-like viral particles (virions) that dot their surface. This family of viruses infects a wide range of vertebrates, most notably mammals and birds, and are consid- ered to be a major cause of viral respiratory infections worldwide.1,2 With the recent detection of the 2019 novel coronavirus (COVID-19), there are now a total of 7 coronaviruses known to infect humans: 1.