A Foreign Function Interface Generator for Occam-Pi
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The Shogun Machine Learning Toolbox
The Shogun Machine Learning Toolbox Heiko Strathmann, Gatsby Unit, UCL London Open Machine Learning Workshop, MSR, NY August 22, 2014 A bit about Shogun I Open-Source tools for ML problems I Started 1999 by SÖren Sonnenburg & GUNnar Rätsch, made public in 2004 I Currently 8 core-developers + 20 regular contributors I Purely open-source community driven I In Google Summer of Code since 2010 (29 projects!) Ohloh - Summary Ohloh - Code Supervised Learning Given: x y n , want: y ∗ x ∗ I f( i ; i )gi=1 j I Classication: y discrete I Support Vector Machine I Gaussian Processes I Logistic Regression I Decision Trees I Nearest Neighbours I Naive Bayes I Regression: y continuous I Gaussian Processes I Support Vector Regression I (Kernel) Ridge Regression I (Group) LASSO Unsupervised Learning Given: x n , want notion of p x I f i gi=1 ( ) I Clustering: I K-Means I (Gaussian) Mixture Models I Hierarchical clustering I Latent Models I (K) PCA I Latent Discriminant Analysis I Independent Component Analysis I Dimension reduction I (K) Locally Linear Embeddings I Many more... And many more I Multiple Kernel Learning I Structured Output I Metric Learning I Variational Inference I Kernel hypothesis testing I Deep Learning (whooo!) I ... I Bindings to: LibLinear, VowpalWabbit, etc.. http://www.shogun-toolbox.org/page/documentation/ notebook Some Large-Scale Applications I Splice Site prediction: 50m examples of 200m dimensions I Face recognition: 20k examples of 750k dimensions ML in Practice I Modular data represetation I Dense, Sparse, Strings, Streams, ... I Multiple types: 8-128 bit word size I Preprocessing tools I Evaluation I Cross-Validation I Accuracy, ROC, MSE, .. -
Life of Occam-Pi
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kent Academic Repository Communicating Process Architectures 2013 293 P.H. Welch et al. (Eds.) Open Channel Publishing Ltd., 2013 © 2013 The authors and Open Channel Publishing Ltd. All rights reserved. Life of occam-Pi Peter H. WELCH School of Computing, University of Kent, UK [email protected] Abstract. This paper considers some questions prompted by a brief review of the history of computing. Why is programming so hard? Why is concurrency considered an “advanced” subject? What’s the matter with Objects? Where did all the Maths go? In searching for answers, the paper looks at some concerns over fundamental ideas within object orientation (as represented by modern programming languages), before focussing on the concurrency model of communicating processes and its particular expression in the occam family of languages. In that focus, it looks at the history of occam, its underlying philosophy (Ockham’s Razor), its semantic foundation on Hoare’s CSP, its principles of process oriented design and its development over almost three decades into occam-π (which blends in the concurrency dynamics of Milner’s π-calculus). Also presented will be an urgent need for rationalisation – occam-π is an experiment that has demonstrated significant results, but now needs time to be spent on careful review and implementing the conclusions of that review. Finally, the future is considered. In particular, is there a future? Keywords. process, object, local reasoning, global reasoning, occam-pi, concurrency, compositionality, verification, multicore, efficiency, scalability, safety, simplicity Introduction Let’s try a few questions to which the answer might be: “occam, obviously”. -
Rmox: a Raw-Metal Occam Experiment
Communicating Process Architectures – 2003 269 Jan F. Broenink and Gerald H. Hilderink (Eds.) IOS Press, 2003 RMoX: A Raw-Metal occam Experiment Fred BARNES†, Christian JACOBSEN† and Brian VINTER‡ † Computing Laboratory, University of Kent, Canterbury, Kent, CT2 7NF, England. {frmb2,clj3}@kent.ac.uk ‡ Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark. [email protected] Abstract. Operating-systems are the core software component of many modern com- puter systems, ranging from small specialised embedded systems through to large distributed operating-systems. This paper presents RMoX: a highly concurrent CSP- based operating-system written in occam. The motivation for this stems from the overwhelming need for reliable, secure and scalable operating-systems. The major- ity of operating-systems are written in C, a language that easily offers the level of flexibility required (for example, interfacing with assembly routines). C compilers, however, provide little or no mechanism to guard against race-hazard and aliasing er- rors, that can lead to catastrophic run-time failure (as well as to more subtle errors, such as security loop-holes). The RMoX operating-system presents a novel approach to operating-system design (although this is not the first CSP-based operating-system). Concurrency is utilised at all levels, resulting in a system design that is well defined, easily understood and scalable. The implementation, using the KRoC extended oc- cam, provides guarantees of freedom from race-hazard and aliasing errors, and makes extensive use of the recently added support for dynamic process creation and channel mobility. Whilst targeted at mainstream computing, the ideas and methods presented are equally applicable for small-scale embedded systems — where advantage can be made of the lightweight nature of RMoX (providing fast interrupt responses, for ex- ample). -
SWIG and Ruby
SWIG and Ruby David Grayson Las Vegas Ruby Meetup 2014-09-10 SWIG ● SWIG stands for: Simplified Wrapper and Interface Generator ● SWIG helps you access C or C++ code from 22 different languages, including Ruby SWIG inputs and outputs Ruby C extension SWIG interface file (.i) source (.c or .cxx) Simple C++ example libdavid.h: libdavid.i #include <stdio.h> %module "david" class David %{ { #include <libdavid.h> public: %} David(int x) { class David this->x = x; { } public: David(int x); void announce() void announce(); { int x; }; printf("David %d\n", x); } int x; }; Compiling Simple C++ example extconf.rb require 'mkmf' system('swig -c++ -ruby libdavid.i') or abort create_makefile('david') Commands to run: $ ruby extconf.rb # create libdavid_wrap.cxx and Makefile $ make # compile david.so $ irb -r./david # try it out irb(main):001:0> d = David::David.new(4) => #<David::David:0x007f40090a5280 @__swigtype__="_p_David"> irb(main):002:0> d.announce David 4 => nil (This example worked for me with SWIG 3.0.2 and Ruby 2.1.2.) That example was pretty simple ● All code was in a .h file ● No external libraries ● Simple data types ● No consideration of deployment ...but SWIG has tons of features C: C++: ● All ISO C datatypes ● All C++ datatypes ● Global functions ● References ● Global variables, constants ● Pointers to members ● Structures and unions ● Classes ● Pointers ● (Multiple) inheritance ● (Multidimensional) arrays ● Overloaded functions ● Pointers to functions ● Overloaded methods ● Variable length arguments ● Overloaded operators ● Typedefs ● Static members ● Enums ● Namespaces ● Templates ● Nested classes ... SWIG Typemaps ● Define custom ways to map between scripting- language types and C++ types. ● Can be used to add and remove parameters from of exposed functions. -
PHP Beyond the Web Shell Scripts, Desktop Software, System Daemons and More
PHP Beyond the web Shell scripts, desktop software, system daemons and more Rob Aley This book is for sale at http://leanpub.com/php This version was published on 2013-11-25 This is a Leanpub book. Leanpub empowers authors and publishers with the Lean Publishing process. Lean Publishing is the act of publishing an in-progress ebook using lightweight tools and many iterations to get reader feedback, pivot until you have the right book and build traction once you do. ©2012 - 2013 Rob Aley Tweet This Book! Please help Rob Aley by spreading the word about this book on Twitter! The suggested hashtag for this book is #phpbeyondtheweb. Find out what other people are saying about the book by clicking on this link to search for this hashtag on Twitter: https://twitter.com/search?q=#phpbeyondtheweb Contents Welcome ............................................ i About the author ...................................... i Acknowledgements ..................................... ii 1 Introduction ........................................ 1 1.1 “Use PHP? We’re not building a website, you know!”. ............... 1 1.2 Are you new to PHP? ................................. 2 1.3 Reader prerequisites. Or, what this book isn’t .................... 3 1.4 An important note for Windows and Mac users ................... 3 1.5 About the sample code ................................ 4 1.6 External resources ................................... 4 1.7 Book formats/versions available, and access to updates ............... 5 1.8 English. The Real English. .............................. 5 2 Getting away from the Web - the basics ......................... 6 2.1 PHP without a web server .............................. 6 2.2 PHP versions - what’s yours? ............................. 7 2.3 A few good reasons NOT to do it in PHP ...................... 8 2.4 Thinking about security ............................... -
Chapters 1-10 As a Single File (Pdf)
Boldrin & Levine: Against Intellectual Monopoly, Chapter 1 Chapter 1: Introduction In late 1764, while repairing a small Newcomen steam engine, the idea of allowing steam to expand and condense in separate containers sprang into the mind of James Watt. He spent the next few months in unceasing labor building a model of the new engine. In 1768, after a series of improvements and substantial borrowing, he applied for a patent on the idea. August found Watt in London about the patent and he spent another six months working hard to obtain it. The patent was finally awarded in January of the following year. Nothing much happened by way of production until 1775. Then, with a major effort supported by his business partner, the rich industrialist Matthew Boulton, Watt secured an Act of Parliament extending his patent until the year 1800. The great statesman Edmund Burke spoke eloquently in Parliament in the name of economic freedom and against the creation of unnecessary monopoly – but to no avail. The connections of Watt’s partner Boulton were too solid to be defeated by simple principle. Once Watt’s patents were secured and production started, a substantial portion of his energy was devoted to fending off rival inventors. In 1782, Watt secured an additional patent, made “necessary in consequence of ... having been so unfairly anticipated, by [Matthew] Wasborough in the crank motion.” More dramatically, in the 1790s, when the superior Hornblower engine was put into production, Boulton and Watt went after him with the full force of the legal system. During the period of Watt’s patents the U.K. -
Analytic Center Cutting Plane Method for Multiple Kernel Learning
Ann Math Artif Intell DOI 10.1007/s10472-013-9331-4 Analytic center cutting plane method for multiple kernel learning Sharon Wulff · Cheng Soon Ong © Springer Science+Business Media Dordrecht 2013 Abstract Multiple Kernel Learning (MKL) is a popular generalization of kernel methods which allows the practitioner to optimize over convex combinations of kernels. We observe that many recent MKL solutions can be cast in the framework of oracle based optimization, and show that they vary in terms of query point generation. The popularity of such methods is because the oracle can fortuitously be implemented as a support vector machine. Motivated by the success of centering approaches in interior point methods, we propose a new approach to optimize the MKL objective based on the analytic center cutting plane method (accpm). Our experimental results show that accpm outperforms state of the art in terms of rate of convergence and robustness. Further analysis sheds some light as to why MKL may not always improve classification accuracy over naive solutions. Keywords Multiple kernel learning · accpm · Oracle methods · Machine learning Mathematics Subject Classification (2010) 68T05 1 Introduction Kernel methods, for example the support vector machine (SVM), are a class of algorithms that consider only the similarity between examples [1]. A kernel function S. Wulff Department of Computer Science, ETH, Zürich, Switzerland e-mail: [email protected] C. S. Ong (B) NICTA, The University of Melbourne, Melbourne, Australia e-mail: [email protected] S. Wulff, C.S. Ong k implicitly maps examples x to a feature space given by a feature map via the identity k(xi, x j) = (xi), (x j) . -
Python and Epics: Channel Access Interface to Python
Python and Epics: Channel Access Interface to Python Matthew Newville Consortium for Advanced Radiation Sciences University of Chicago October 12, 2010 http://cars9.uchicago.edu/software/python/pyepics3/ Matthew Newville (CARS, Univ Chicago) Epics and Python October 12, 2010 Why Python? The Standard Answers Clean Syntax Easy to learn, remember, and read High Level Language No pointers, dynamic memory, automatic memory Cross Platform code portable to Unix, Windows, Mac. Object Oriented full object model, name spaces. Also: procedural! Extensible with C, C++, Fortran, Java, .NET Many Libraries GUIs, Databases, Web, Image Processing, Array math Free Both senses of the word. No, really: completely free. Matthew Newville (CARS, Univ Chicago) Epics and Python October 12, 2010 Why Python? The Real Answer Scientists use Python. Matthew Newville (CARS, Univ Chicago) Epics and Python October 12, 2010 All of these tools use the C implementation of Python. NOT Jython (Python in Java) or IronPython (Python in .NET): I am not talking about Jython. Why Do Scientists Use Python? Python is great. The tools are even better: numpy Fast arrays. matplotlib Excellent Plotting library scipy Numerical Algorithms (FFT, lapack, fitting, . ) f2py Wrapping Fortran for Python sage Symbolic math (ala Maple, Mathematica) GUI Choices Tk, wxWidgets, Qt, . Free Python is Free. All these tools are Free (BSD). Matthew Newville (CARS, Univ Chicago) Epics and Python October 12, 2010 Why Do Scientists Use Python? Python is great. The tools are even better: numpy Fast arrays. matplotlib Excellent Plotting library scipy Numerical Algorithms (FFT, lapack, fitting, . ) f2py Wrapping Fortran for Python sage Symbolic math (ala Maple, Mathematica) GUI Choices Tk, wxWidgets, Qt, . -
Foreign Library Interface by Daniel Adler Dia Applications That Can Run on a Multitude of Plat- Forms
30 CONTRIBUTED RESEARCH ARTICLES Foreign Library Interface by Daniel Adler dia applications that can run on a multitude of plat- forms. Abstract We present an improved Foreign Function Interface (FFI) for R to call arbitary na- tive functions without the need for C wrapper Foreign function interfaces code. Further we discuss a dynamic linkage framework for binding standard C libraries to FFIs provide the backbone of a language to inter- R across platforms using a universal type infor- face with foreign code. Depending on the design of mation format. The package rdyncall comprises this service, it can largely unburden developers from the framework and an initial repository of cross- writing additional wrapper code. In this section, we platform bindings for standard libraries such as compare the built-in R FFI with that provided by (legacy and modern) OpenGL, the family of SDL rdyncall. We use a simple example that sketches the libraries and Expat. The package enables system- different work flow paths for making an R binding to level programming using the R language; sam- a function from a foreign C library. ple applications are given in the article. We out- line the underlying automation tool-chain that extracts cross-platform bindings from C headers, FFI of base R making the repository extendable and open for Suppose that we wish to invoke the C function sqrt library developers. of the Standard C Math library. The function is de- clared as follows in C: Introduction double sqrt(double x); We present an improved Foreign Function Interface The .C function from the base R FFI offers a call (FFI) for R that significantly reduces the amount of gate to C code with very strict conversion rules, and C wrapper code needed to interface with C. -
Dynamic Message-Oriented Middleware with Open Sound Control and Odot
http://www.cnmat.berkeley.edu/publications/dynamic-message-oriented-middleware-open-sound-control-and-odot Dynamic Message-Oriented Middleware with Open Sound Control and Odot John MacCallum1, Rama Gottfried1, Ilya Rostovtsev1, Jean Bresson2, and Adrian Freed1 1Center for New Music and Audio Technologies, Department of Music, University of California, Berkeley, [email protected], [email protected], [email protected], [email protected] 2UMR STMS: IRCAM-CNRS-UPMC, Paris, [email protected] ABSTRACT coding, and the odot framework provides a set of tools for constructing such a layer in a dynamic and agile fashion. We present recent work on odot, a system that extends Open We begin with brief descriptions of Message-Oriented Mid- Sound Control and facilitates the rapid and dynamic con- dleware, OSC, and odot. We then discuss our ongoing work struction of Message-Oriented Middleware providing an in- to provide support for a variety of host and nested host envi- teroperability layer for communication between applications. ronments that can be made to communicate by passing OSC Unlike traditional middleware systems, odot, when embedded between them. Finally, we conclude by discussing a number in a host environment, provides a node where computation of examples and future work. can take place, allowing middleware to take shape dynami- cally as the needs of the system develop. 2. OPEN SOUND CONTROL AND ODOT 2.1 Open Sound Control (OSC) 1. INTRODUCTION Open Sound Control[1][2][3] is a popular encoding in the In the course of a complex design project we often encounter music and media/arts programming communities for moving the need to use multiple applications to satisfy a diverse set data between sensors and actuators, as well as processes and of requirements. -
Programovacı Jazyky Pro Vy´Uku Programova´Nı Na
MASARYKOVA UNIVERZITA }w¡¢£¤¥¦§¨ FAKULTA INFORMATIKY !"#$%&'()+,-./012345<yA| Programovacı´jazyky pro vy´uku programova´nı´na SSˇ DIPLOMOVA´ PRA´ CE Bc. Luka´sˇRy´dlo Brno, 2012 Prohla´sˇenı´ Prohlasˇuji, zˇe tato diplomova´pra´ce je my´m pu˚vodnı´m autorsky´m dı´lem, ktere´ jsem vypracoval samostatneˇ. Vsˇechny zdroje, prameny a literaturu, ktere´jsem prˇi vypracova´nı´pouzˇı´val nebo z nich cˇerpal, v pra´ci rˇa´dneˇcituji s uvedenı´m u´plne´ho odkazu na prˇı´slusˇny´zdroj. Vedoucı´pra´ce: doc. RNDr. Toma´sˇPitner, Ph.D. iii Podeˇkova´nı´ Ra´d bych podeˇkoval vedoucı´mu sve´pra´ce, doc. RNDr. Toma´sˇi Pitnerovi, Ph.D. za ochotu ve´st me´te´ma, nevsˇednı´vstrˇı´cnost a trpeˇlivost i konkre´tnı´tipy. v Abstrakt Pra´ce prˇina´sˇı´zhodnocenı´ru˚zny´ch programovacı´ch jazyku˚, metodik a prostrˇedı´ pro potrˇeby vy´uky na strˇednı´ch sˇkola´ch. V u´vodnı´kapitole jsou popsane´teoreticke´ koncepty, formy vy´uky, analy´za metodik v oblasti vy´uky programova´nı´, vhodnost jednotlivy´ch paradigmat. Druha´kapitola prˇina´sˇı´prˇehled za´kladnı´ch metod graficke´ho popisu algoritmu, jejich vhodnost a vyuzˇitelnost prˇi vy´uce. Trˇetı´kapitola zacˇı´na´na´vrhem metodiky hodnocenı´programovacı´ch jazyku˚pro potrˇeby vy´uky a jejich prˇehledem. Dalsˇı´ka- pitola hodnotı´pro zmeˇnu ru˚zna´vy´vojova´prostrˇedı´, at’uzˇpouzˇı´vana´v beˇzˇne´praxi nebo urcˇena´prˇı´mo pro vy´uku. Za´veˇr pra´ce je veˇnova´n vy´ukovy´m materia´lu˚m pro semina´rˇz programova´nı´na gymna´ziu v jazyce Java metodou objects first, resp. -
SWIG-1.3 Documentation
SWIG−1.3 Documentation SWIG−1.3 Documentation Table of Contents SWIG−1.3 Development Documentation..........................................................................................................................................1 Sections...................................................................................................................................................................................1 SWIG Core Documentation............................................................................................................................................1 Language Module Documentation..................................................................................................................................1 Developer Documentation...............................................................................................................................................1 Documentation that has not yet been updated.................................................................................................................2 1 Preface...............................................................................................................................................................................................3 1.1 Introduction.......................................................................................................................................................................3 1.2 Special Introduction for Version 1.3................................................................................................................................3