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Comparisons of Picophytoplankton Abundance, Size, and Fluorescence
Continental Shelf Research 31 (2011) 1527–1540 Contents lists available at ScienceDirect Continental Shelf Research journal homepage: www.elsevier.com/locate/csr Research papers Comparisons of picophytoplankton abundance, size, and fluorescence between summer and winter in northern South China Sea Bingzhang Chen a,b, Lei Wang b, Shuqun Song a,c, Bangqin Huang b, Jun Sun d, Hongbin Liu a,n a Division of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong b State Key Laboratory of Marine Environmental Science, Environmental Science Research Center, Xiamen, PR China c Key Laboratory of Marine Ecology and Environmental Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, PR China d College of Marine Science and Engineering, Tianjin University of Science and Technology, Tianjin, PR China article info abstract Article history: The abundance, size, and fluorescence of picophytoplankton cells were investigated during the summer Received 29 December 2010 (July–August of 2009) and winter (January of 2010) extending from near-shore coastal waters to Received in revised form oligotrophic open waters in northern South China Sea, under the influence of contrasting seasonal 26 June 2011 monsoons. We found that the median abundance of Prochlorococcus averaged over top 150 m decreased Accepted 30 June 2011 nearly 10 times in the winter compared to the summer in the whole survey area, while median Available online 12 July 2011 abundance of Synechococcus and picoeukaryotes increased 2.6 and 2.4 folds, respectively. Vertical Keywords: abundance profiles of picoeukaryotes usually formed a subsurface maximum during the summer Picophytoplankton with the depth of maximal abundances tracking the depth of nutricline, whereas their vertical Abundance distributions were more uniform during the winter. -
Flagellum Couples Cell Shape to Motility in Trypanosoma Brucei
Flagellum couples cell shape to motility in Trypanosoma brucei Stella Y. Suna,b,c, Jason T. Kaelberd, Muyuan Chene, Xiaoduo Dongf, Yasaman Nematbakhshg, Jian Shih, Matthew Doughertye, Chwee Teck Limf,g, Michael F. Schmidc, Wah Chiua,b,c,1, and Cynthia Y. Hef,h,1 aDepartment of Bioengineering, James H. Clark Center, Stanford University, Stanford, CA 94305; bDepartment of Microbiology and Immunology, James H. Clark Center, Stanford University, Stanford, CA 94305; cSLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025; dDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030; eVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030; fMechanobiology Institute, National University of Singapore, Singapore 117411; gDepartment of Mechanical Engineering, National University of Singapore, Singapore 117575; and hDepartment of Biological Sciences, Center for BioImaging Sciences, National University of Singapore, Singapore 117543 Contributed by Wah Chiu, May 17, 2018 (sent for review December 29, 2017; reviewed by Phillipe Bastin and Abraham J. Koster) In the unicellular parasite Trypanosoma brucei, the causative Cryo-electron tomography (cryo-ET) allows us to view 3D agent of human African sleeping sickness, complex swimming be- supramolecular details of biological samples preserved in their havior is driven by a flagellum laterally attached to the long and proper cellular context without chemical fixative and/or metal slender cell body. Using microfluidic assays, we demonstrated that stain. However, samples thicker than 1 μm are not accessible to T. brucei can penetrate through an orifice smaller than its maxi- cryo-ET because at typical accelerating voltages (≤300 kV), few mum diameter. -
Acidotropic Probes and Flow Cytometry: a Powerful Combination for Detecting Phagotrophy in Mixotrophic and Heterotrophic Protists
AQUATIC MICROBIAL ECOLOGY Vol. 44: 85–96, 2006 Published August 16 Aquat Microb Ecol Acidotropic probes and flow cytometry: a powerful combination for detecting phagotrophy in mixotrophic and heterotrophic protists Wanderson F. Carvalho*, Edna Granéli Marine Science Department, University of Kalmar, 391 82 Kalmar, Sweden ABSTRACT: Studies with phagotrophic organisms are hampered by a series of methodological con- straints. To overcome problems related to the detection and enumeration of mixotrophic and hetero- trophic cells containing food vacuoles, we combined flow cytometry and an acidotropic blue probe as an alternative method. Flow cytometry allows the analysis of thousands of cells per minute with high sensitivity to the autofluorescence of different groups of cells and to probe fluorescence. The method was first tested in a grazing experiment where the heterotrophic dinoflagellate Oxyrrhis marina fed on Rhodomonas salina. The maximum ingestion rate of O. marina was 1.7 prey ind.–1 h–1, and the fre- quency of cells with R. salina in the food vacuoles increased from 0 to 2.4 ± 0.5 × 103 cells ml–1 within 6 h. The blue probe stained 100% of O. marina cells that had R. salina in the food vacuoles. The acidotropic blue probe was also effective in staining food vacuoles in the mixotrophic dinoflagellate Dinophysis norvegica. We observed that 75% of the D. norvegica population in the aphotic zone pos- sessed food vacuoles. Overall, in cells without food vacuoles, blue fluorescence was as low as in cells that were kept probe free. Blue fluorescence in O. marina cells with food vacuoles was 6-fold higher than in those without food vacuoles (20 ± 4 and 3 ± 0 relative blue fluorescence cell–1, respectively), while in D. -
Antimicrobial Peptides Expression for Defense System in Chicken Gastrointestinal and Reproductive Organs
The 6th International Seminar on Tropical Animal Production Integrated Approach in Developing Sustainable Tropical Animal Production October 20-22, 2015, Yogyakarta, Indonesia Antimicrobial Peptides Expression for Defense System in Chicken Gastrointestinal and Reproductive Organs Yukinori Yoshimura1, 2 Bambang Ariyadi3 and Naoki Isobe1, 2 1Graduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima 739- 8528, Japan; 2Research Center for Animal Science, Hiroshima University, Higashi-Hiroshima 739-8528, Japan; 3Faculty of Animal Science, Universitas Gadjah Mada, Yogyakarta, 55281 Indonesia. Email address: [email protected] ABSTRACT: Maintenance of animal health is essential to obtain their maximum productivity and safe products. Avian β-defensins (AvBDs) are the member of antimicrobial peptides, and Toll-like receptors (TLRs) are the primary receptors that recognize pathogen-associated molecular patterns (PAMPs) of microbes. The aim of this study was to characterize the innate immune system with the focus on the expression of AvBDs in the gastrointestinal tract and reproductive organs for the strategy to enhance the disease resistance of chickens. The proventriculus and cecum of broiler chicks expressed TLRs and AvBDs. It is suggested that a variety of PAMPs of microbes are recognized by different TLRs, probably leading to regulate the synthesis of innate immune factors including AvBDs. In laying hens, TLRs and AvBDs were expressed in the theca and granulosa layers of ovarian follicles and in the oviduct. In vivo LPS challenge increased the expression of several AvBDs in the theca tissue. In contrast, in the cultured theca tissue, LPS upregulated the expression of IL1β and IL6, but did not affect the AvBDs expression; whereas IL1β upregulated the expression of the AvBD12 gene and protein. -
Species-Specific Consequences of Ocean Acidification for the Calcareous Tropical Green Algae Halimeda
Vol. 440: 67–78, 2011 MARINE ECOLOGY PROGRESS SERIES Published October 28 doi: 10.3354/meps09309 Mar Ecol Prog Ser Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda Nichole N. Price1,*, Scott L. Hamilton2, 3, Jesse S. Tootell2, Jennifer E. Smith1 1Center for Marine Biodiversity and Conservation, Marine Biology Research Division, Scripps Institution of Oceanography, La Jolla, California 92093-0202, USA 2 Ecology, Evolution and Marine Biology Department, University of California, Santa Barbara, California 93106, USA 3Moss Landing Marine Laboratories, 8272 Moss Landing Rd., Moss Landing, California 95039, USA ABSTRACT: Ocean acidification (OA), resulting from increasing dissolved carbon dioxide (CO2) in surface waters, is likely to affect many marine organisms, particularly those that calcify. Recent OA studies have demonstrated negative and/or differential effects of reduced pH on growth, development, calcification and physiology, but most of these have focused on taxa other than cal- careous benthic macroalgae. Here we investigate the potential effects of OA on one of the most common coral reef macroalgal genera, Halimeda. Species of Halimeda produce a large proportion of the sand in the tropics and are a major contributor to framework development on reefs because of their rapid calcium carbonate production and high turnover rates. On Palmyra Atoll in the cen- tral Pacific, we conducted a manipulative bubbling experiment to investigate the potential effects of OA on growth, calcification and photophysiology of 2 species of Halimeda. Our results suggest that Halimeda is highly susceptible to reduced pH and aragonite saturation state but the magni- tude of these effects is species specific. -
Effect of Low Water Temperature on Metabolism and Growth of a Subtropical Strain of Caulerpa Taxifolia (Chlorophyta)
MARINE ECOLOGY PROGRESS SERIES Vol. 201: 189–198, 2000 Published August 9 Mar Ecol Prog Ser Effect of low water temperature on metabolism and growth of a subtropical strain of Caulerpa taxifolia (Chlorophyta) John R. M. Chisholm1,*, Manuel Marchioretti1, Jean M. Jaubert1, 2 1Observatoire Océanologique Européen, Centre Scientifique de Monaco, Avenue Saint-Martin, 98000, Principality of Monaco 2Université de Nice-Sophia Antipolis, Laboratoire d’Ecologie Expérimentale, Campus Valrose, 06108 Nice Cédex 02, France ABSTRACT: The cold tolerance capacity of samples of the marine green alga Caulerpa taxifolia, ob- tained from Moreton Bay, Brisbane, Australia, was investigated by exposing samples to seawater tem- peratures of 9 to 15°C, for periods of 4 to 10 wk, after maintenance at 22°C. Residual effects of cold wa- ter exposure were evaluated by re-acclimating samples to 22°C. Phenotypic expression and survivorship were monitored throughout both cold treatment and re-acclimation phases. Measurements of photo- synthesis and respiration were made toward the end of the cold treatments and after re-acclimation. Samples exposed to 9 and 11°C water exhibited retraction or loss of chloroplasts (or chlorophyll) from the mid-rib regions of the pseudo-fronds. After 4 wk of exposure to 9°C the only green coloured regions of the fronds were the extremities of the pinnules; 1 to 2 wk later these samples began to decompose. Sam- ples kept at 11°C retained the bulk of their photosynthetic pigments and survived throughout experi- ments. The stolons of samples tended to grow upward toward the seawater surface rather than parallel to the substratum. -
C O N F E R E N C E 12 6 January 2016
Joint Pathology Center Veterinary Pathology Services WEDNESDAY SLIDE CONFERENCE 2015-2016 C o n f e r e n c e 12 6 January 2016 Moderator: Tim Cooper, DVM, Ph.D, DACVP Associate Professor Department of Comparative Pathology Penn State Hershey Medical Center Hershey, PA CASE I: A10-9691 (JPC 3164430). Numerous fluid-filled cysts up to 7-8 mm in diameter were evident on cross-section. Signalment: Adult female guinea pig (Cavia Extensive stromal calcification or porcellus). ossification necessitated decalcification before histologic processing. History: This underweight adult guinea pig was found abandoned with truncal alopecia Laboratory Results: and a palpable abdominal mass. Age was No ancillary testing performed. estimated at 3 years. Ovariohysterectomy was performed in preparation for adoption. Histopathologic Description: A few viable follicles are in the periphery of the mass, but most of the specimen lacks recognizable ovarian tissue and instead is composed of neoplastic tissue from all 3 germ layers. The endodermal component includes tubuloacinar glands (lobules of serous acini formed by pyramidal cells with bright eosinophilic cytoplasmic granules) and cystic Ovary, guinea pig. The right ovary was enlarged at 3.5 cm x spaces lined by respiratory type epithelium 4 cm x 3.5 cm. (Photo courtesy of: Purdue University Animal Disease Diagnostic Laboratory: with numerous ciliated cells and mucus-filled http://www.addl.purdue.edu/ and Department of goblet cells. The ectodermal component Comparative Pathobiology: http://www.vet.purdue.) consists of neuroectodermal tissue with axons, glial cells, and neuronal cell bodies; Gross Pathology: The right ovary was no skin, hair follicles or cutaneous adnexal enlarged at 3.5 cm x 4 cm x 3.5 cm. -
Ciliary Dyneins and Dynein Related Ciliopathies
cells Review Ciliary Dyneins and Dynein Related Ciliopathies Dinu Antony 1,2,3, Han G. Brunner 2,3 and Miriam Schmidts 1,2,3,* 1 Center for Pediatrics and Adolescent Medicine, University Hospital Freiburg, Freiburg University Faculty of Medicine, Mathildenstrasse 1, 79106 Freiburg, Germany; [email protected] 2 Genome Research Division, Human Genetics Department, Radboud University Medical Center, Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands; [email protected] 3 Radboud Institute for Molecular Life Sciences (RIMLS), Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands * Correspondence: [email protected]; Tel.: +49-761-44391; Fax: +49-761-44710 Abstract: Although ubiquitously present, the relevance of cilia for vertebrate development and health has long been underrated. However, the aberration or dysfunction of ciliary structures or components results in a large heterogeneous group of disorders in mammals, termed ciliopathies. The majority of human ciliopathy cases are caused by malfunction of the ciliary dynein motor activity, powering retrograde intraflagellar transport (enabled by the cytoplasmic dynein-2 complex) or axonemal movement (axonemal dynein complexes). Despite a partially shared evolutionary developmental path and shared ciliary localization, the cytoplasmic dynein-2 and axonemal dynein functions are markedly different: while cytoplasmic dynein-2 complex dysfunction results in an ultra-rare syndromal skeleto-renal phenotype with a high lethality, axonemal dynein dysfunction is associated with a motile cilia dysfunction disorder, primary ciliary dyskinesia (PCD) or Kartagener syndrome, causing recurrent airway infection, degenerative lung disease, laterality defects, and infertility. In this review, we provide an overview of ciliary dynein complex compositions, their functions, clinical disease hallmarks of ciliary dynein disorders, presumed underlying pathomechanisms, and novel Citation: Antony, D.; Brunner, H.G.; developments in the field. -
F. Y. B. Sc.(Botany) Question Bank
Question bank for F.Y. B.Sc. Botany Paper-I Diversity Of Lower And Higher Cryptogams Paper-II Economic And Applied Botany -Prepared by- Chairperson, Members Of Board of Studies and Experienced teachers in Botany Of North Maharashtra University, Jalgaon. -Approved by- Dean, Science faculty, North Maharashtra University, Jalgaon. Botany paper I Diversity of Lower and Higher cryptogams Term-I Chapter: 1 Diversity of Lower cryptogams 2 Marks Questions: 1. Define diversity? Explain diversity in algae 2.What is diversity? Explain diversity in fungi 3.The study of algae is known as -------- a) Mycology b) Phycology c) Taxonomy d) Physiology 4. The branch which deals with study of fungi is known as-------- a) Physiology b) Ecology c) Mycology d) Phycology 5.Thalloid and non flowering plants are known as ------- a)Angiosperm b)Thallophyta c)Gymnosperm d) Dicotyledons Chapter: 2 Algae 2 Marks Questions: 1. What is epiphytic algae 2. What is symbiotic algae 3. The reserve food material in algae is -------- a) cellulose b) starch c) protein d) glycogen 4.The cell wall in algae is made up of-------- a) Chitin b) cellulose c) pectin d) glycogen 5. Fusion between gametes of equal sizes is called ------ a) Isogamy b) Anisogamy c) Oogamy d) Dichotogamy 6. Fusion between gametes of unequal sizes is called ------ a) Dichotogamy b) Anisogamy c) Oogamy d) Isogamy 7. An alga growing on aquatic animal is called-------- a) Epizoic b) Endozoic c) Epiphytic d) Terrestrial 8. The algae growing in seawater is known as ------- a) Freshwater algae b) Terrestrial algae c) Marine algae d) Lithophytic algae 4 Marks Questions: 1.Give the general characters of algae. -
Relationship Between Advanced Glycation End Products and Steroidogenesis in PCOS Deepika Garg1 and Zaher Merhi2*
Garg and Merhi Reproductive Biology and Endocrinology (2016) 14:71 DOI 10.1186/s12958-016-0205-6 REVIEW Open Access Relationship between Advanced Glycation End Products and Steroidogenesis in PCOS Deepika Garg1 and Zaher Merhi2* Abstract Background: Women with PCOS have elevated levels of the harmful Advanced Glycation End Products (AGEs), which are highly reactive molecules formed after glycation of lipids and proteins. Additionally, AGEs accumulate in the ovaries of women with PCOS potentially contributing to the well-documented abnormal steroidogenesis and folliculogenesis. Main body: A systematic review of articles and abstracts available in PubMed was conducted and presented in a systemic manner. This article reports changes in steroidogenic enzyme activity in granulosa and theca cells in PCOS and PCOS-models. It also described the changes in AGEs and their receptors in the ovaries of women with PCOS and presents the underlying mechanism(s) whereby AGEs could be responsible for the PCOS-related changes in granulosa and theca cell function thus adversely impacting steroidogenesis and follicular development. AGEs are associated with hyperandrogenism in PCOS possibly by altering the activity of various enzymes such as cholesterol side-chain cleavage enzyme cytochrome P450, steroidogenic acute regulatory protein, 17α-hydroxylase, and 3β- hydroxysteroid dehydrogenase. AGEs also affect luteinizing hormone receptor and anti-Mullerian hormone receptor expression as well as their signaling pathways in granulosa cells. Conclusions: A better understanding of how AGEs alter granulosa and theca cell function is likely to contribute meaningfully to a conceptual framework whereby new interventions to prevent and/or treat ovarian dysfunction in PCOS can ultimately be developed. -
From Algae to Flowering Plants
PP62CH23-Popper ARI 4 April 2011 14:20 Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants Zoe¨ A. Popper,1 Gurvan Michel,3,4 Cecile´ Herve,´ 3,4 David S. Domozych,5 William G.T. Willats,6 Maria G. Tuohy,2 Bernard Kloareg,3,4 and Dagmar B. Stengel1 1Botany and Plant Science, and 2Molecular Glycotechnology Group, Biochemistry, School of Natural Sciences, National University of Ireland, Galway, Ireland; email: [email protected] 3CNRS and 4UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F-29682 Roscoff, Bretagne, France 5Department of Biology and Skidmore Microscopy Imaging Center, Skidmore College, Saratoga Springs, New York 12866 6Department of Plant Biology and Biochemistry, Faculty of Life Sciences, University of Copenhagen, Bulowsvej,¨ 17-1870 Frederiksberg, Denmark Annu. Rev. Plant Biol. 2011. 62:567–90 Keywords First published online as a Review in Advance on xyloglucan, mannan, arabinogalactan proteins, genome, environment, February 22, 2011 multicellularity The Annual Review of Plant Biology is online at plant.annualreviews.org Abstract This article’s doi: All photosynthetic multicellular Eukaryotes, including land plants 10.1146/annurev-arplant-042110-103809 by Universidad Veracruzana on 01/08/14. For personal use only. and algae, have cells that are surrounded by a dynamic, complex, Copyright c 2011 by Annual Reviews. carbohydrate-rich cell wall. The cell wall exerts considerable biologi- All rights reserved cal and biomechanical control over individual cells and organisms, thus Annu. Rev. Plant Biol. 2011.62:567-590. Downloaded from www.annualreviews.org 1543-5008/11/0602-0567$20.00 playing a key role in their environmental interactions. -
BRYOPHYTES .Pdf
Diversity of Microbes and Cryptogams Bryophyta Geeta Asthana Department of Botany, University of Lucknow, Lucknow – 226007 India Date of submission: May 11, 2006 Version: English Significant Key words: Bryophyta, Hepaticopsida (Liverworts), Anthocerotopsida (Hornworts), , Bryopsida (Mosses). 1 Contents 1. Introduction • Definition & Systematic Position in the Plant Kingdom • Alternation of Generation • Life-cycle Pattern • Affinities with Algae and Pteridophytes • General Characters 2. Classification 3. Class – Hepaticopsida • General characters • Classification o Order – Calobryales o Order – Jungermanniales – Frullania o Order – Metzgeriales – Pellia o Order – Monocleales o Order – Sphaerocarpales o Order – Marchantiales – Marchantia 4. Class – Anthocerotopsida • General Characters • Classification o Order – Anthocerotales – Anthoceros 5. Class – Bryopsida • General Characters • Classification o Order – Sphagnales – Sphagnum o Order – Andreaeales – Andreaea o Order – Takakiales – Takakia o Order – Polytrichales – Pogonatum, Polytrichum o Order – Buxbaumiales – Buxbaumia o Order – Bryales – Funaria 6. References 2 Introduction Bryophytes are “Avascular Archegoniate Cryptogams” which constitute a large group of highly diversified plants. Systematic position in the plant kingdom The plant kingdom has been classified variously from time to time. The early systems of classification were mostly artificial in which the plants were grouped for the sake of convenience based on (observable) evident characters. Carolus Linnaeus (1753) classified