Sub-Mitochondrial Localization of the Catalytic Subunit of Pyruvate
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Mt-Atp8 Gene in the Conplastic Mouse Strain C57BL/6J-Mtfvb/NJ on the Mitochondrial Function and Consequent Alterations to Metabolic and Immunological Phenotypes
From the Lübeck Institute of Experimental Dermatology of the University of Lübeck Director: Prof. Dr. Saleh M. Ibrahim Interplay of mtDNA, metabolism and microbiota in the pathogenesis of AIBD Dissertation for Fulfillment of Requirements for the Doctoral Degree of the University of Lübeck from the Department of Natural Sciences Submitted by Paul Schilf from Rostock Lübeck, 2016 First referee: Prof. Dr. Saleh M. Ibrahim Second referee: Prof. Dr. Stephan Anemüller Chairman: Prof. Dr. Rainer Duden Date of oral examination: 30.03.2017 Approved for printing: Lübeck, 06.04.2017 Ich versichere, dass ich die Dissertation ohne fremde Hilfe angefertigt und keine anderen als die angegebenen Hilfsmittel verwendet habe. Weder vorher noch gleichzeitig habe ich andernorts einen Zulassungsantrag gestellt oder diese Dissertation vorgelegt. ABSTRACT Mitochondria are critical in the regulation of cellular metabolism and influence signaling processes and inflammatory responses. Mitochondrial DNA mutations and mitochondrial dysfunction are known to cause a wide range of pathological conditions and are associated with various immune diseases. The findings in this work describe the effect of a mutation in the mitochondrially encoded mt-Atp8 gene in the conplastic mouse strain C57BL/6J-mtFVB/NJ on the mitochondrial function and consequent alterations to metabolic and immunological phenotypes. This work provides insights into the mutation-induced cellular adaptations that influence the inflammatory milieu and shape pathological processes, in particular focusing on autoimmune bullous diseases, which have recently been reported to be associated with mtDNA polymorphisms in the human MT-ATP8 gene. The mt-Atp8 mutation diminishes the assembly of the ATP synthase complex into multimers and decreases mitochondrial respiration, affects generation of reactive oxygen species thus leading to a shift in the metabolic balance and reduction in the energy state of the cell as indicated by the ratio ATP to ADP. -
Mutation of the Fumarase Gene in Two Siblings with Progressive Encephalopathy and Fumarase Deficiency T
Mutation of the Fumarase Gene in Two Siblings with Progressive Encephalopathy and Fumarase Deficiency T. Bourgeron,* D. Chretien,* J. Poggi-Bach, S. Doonan,' D. Rabier,* P. Letouze,I A. Munnich,* A. R6tig,* P. Landneu,* and P. Rustin* *Unite de Recherches sur les Handicaps Genetiques de l'Enfant, INSERM U393, Departement de Pediatrie et Departement de Biochimie, H6pital des Enfants-Malades, 149, rue de Sevres, 75743 Paris Cedex 15, France; tDepartement de Pediatrie, Service de Neurologie et Laboratoire de Biochimie, Hopital du Kremlin-Bicetre, France; IFaculty ofScience, University ofEast-London, UK; and IService de Pediatrie, Hopital de Dreux, France Abstract chondrial enzyme (7). Human tissue fumarase is almost We report an inborn error of the tricarboxylic acid cycle, fu- equally distributed between the mitochondria, where the en- marase deficiency, in two siblings born to first cousin parents. zyme catalyzes the reversible hydration of fumarate to malate They presented with progressive encephalopathy, dystonia, as a part ofthe tricarboxylic acid cycle, and the cytosol, where it leucopenia, and neutropenia. Elevation oflactate in the cerebro- is involved in the metabolism of the fumarate released by the spinal fluid and high fumarate excretion in the urine led us to urea cycle. The two isoenzymes have quite homologous struc- investigate the activities of the respiratory chain and of the tures. In rat liver, they differ only by the acetylation of the Krebs cycle, and to finally identify fumarase deficiency in these NH2-terminal amino acid of the cytosolic form (8). In all spe- two children. The deficiency was profound and present in all cies investigated so far, the two isoenzymes have been found to tissues investigated, affecting the cytosolic and the mitochon- be encoded by a single gene (9,10). -
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UNDERSTANDING THE GENETICS UNDERLYING MASTITIS USING A MULTI-PRONGED APPROACH A Dissertation Presented to the Faculty of the Graduate School of Cornell University In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy by Asha Marie Miles December 2019 © 2019 Asha Marie Miles UNDERSTANDING THE GENETICS UNDERLYING MASTITIS USING A MULTI-PRONGED APPROACH Asha Marie Miles, Ph. D. Cornell University 2019 This dissertation addresses deficiencies in the existing genetic characterization of mastitis due to granddaughter study designs and selection strategies based primarily on lactation average somatic cell score (SCS). Composite milk samples were collected across 6 sampling periods representing key lactation stages: 0-1 day in milk (DIM), 3- 5 DIM, 10-14 DIM, 50-60 DIM, 90-110 DIM, and 210-230 DIM. Cows were scored for front and rear teat length, width, end shape, and placement, fore udder attachment, udder cleft, udder depth, rear udder height, and rear udder width. Independent multivariable logistic regression models were used to generate odds ratios for elevated SCC (≥ 200,000 cells/ml) and farm-diagnosed clinical mastitis. Within our study cohort, loose fore udder attachment, flat teat ends, low rear udder height, and wide rear teats were associated with increased odds of mastitis. Principal component analysis was performed on these traits to create a single new phenotype describing mastitis susceptibility based on these high-risk phenotypes. Cows (N = 471) were genotyped on the Illumina BovineHD 777K SNP chip and considering all 14 traits of interest, a total of 56 genome-wide associations (GWA) were performed and 28 significantly associated quantitative trait loci (QTL) were identified. -
Deficiency of Skeletal Muscle Succinate Dehydrogenase and Aconitase
Deficiency of skeletal muscle succinate dehydrogenase and aconitase. Pathophysiology of exercise in a novel human muscle oxidative defect. R G Haller, … , K Ayyad, C G Blomqvist J Clin Invest. 1991;88(4):1197-1206. https://doi.org/10.1172/JCI115422. Research Article We evaluated a 22-yr-old Swedish man with lifelong exercise intolerance marked by premature exertional muscle fatigue, dyspnea, and cardiac palpitations with superimposed episodes lasting days to weeks of increased muscle fatigability and weakness associated with painful muscle swelling and pigmenturia. Cycle exercise testing revealed low maximal oxygen uptake (12 ml/min per kg; healthy sedentary men = 39 +/- 5) with exaggerated increases in venous lactate and pyruvate in relation to oxygen uptake (VO2) but low lactate/pyruvate ratios in maximal exercise. The severe oxidative limitation was characterized by impaired muscle oxygen extraction indicated by subnormal systemic arteriovenous oxygen difference (a- v O2 diff) in maximal exercise (patient = 4.0 ml/dl, normal men = 16.7 +/- 2.1) despite normal oxygen carrying capacity and Hgb-O2 P50. In contrast maximal oxygen delivery (cardiac output, Q) was high compared to sedentary healthy men (Qmax, patient = 303 ml/min per kg, normal men 238 +/- 36) and the slope of increase in Q relative to VO2 (i.e., delta Q/delta VO2) from rest to exercise was exaggerated (delta Q/delta VO2, patient = 29, normal men = 4.7 +/- 0.6) indicating uncoupling of the normal approximately 1:1 relationship between oxygen delivery and utilization in dynamic exercise. Studies of isolated skeletal muscle mitochondria in our patient revealed markedly impaired succinate oxidation with normal glutamate oxidation implying a metabolic defect at […] Find the latest version: https://jci.me/115422/pdf Deficiency of Skeletal Muscle Succinate Dehydrogenase and Aconitase Pathophysiology of Exercise in a Novel Human Muscle Oxidative Defect Ronald G. -
Downloads, 2019-11-21 Version) with the Same Set of Keywords Used in a Previous Study14 (One
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.13.422502; this version posted December 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Association of Structural Variation with Cardiometabolic Traits in Finns 2 3 Lei Chen,1,2,3 Haley J. Abel,1,2 Indraniel Das,1 David E. Larson,1,4 Liron Ganel,1,2 Krishna L. Kanchi,1 4 Allison A. Regier,1,2 Erica P. Young,1,5 Chul Joo Kang,1 Alexandra J Scott,1,2 Colby Chiang,1,2 Xinxin 5 Wang,1,2,3 Shuangjia Lu,3 Ryan Christ,1 Susan K. Service,6 Charleston W.K. Chiang,7,8 Aki S. 6 Havulinna,9,10 Johanna Kuusisto,11,12 Michael Boehnke,13 Markku Laakso,11,12 Aarno Palotie,9,14,15 7 Samuli Ripatti,9,15,16 Nelson B. Freimer,6 Adam E. Locke,1,2 Nathan O. Stitziel,1,2,4,* Ira M. Hall1,2,3,* 8 9 1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA 10 2 Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA 11 3 Department of Genetics, Yale University School of Medicine, New Haven, CT, USA 12 4 Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA 13 5 Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. -
Mitochondrial Supercomplex Assembly Promotes Breast and Endometrial Tumorigenesis by Metabolic Alterations and Enhanced Hypoxia Tolerance
ARTICLE https://doi.org/10.1038/s41467-019-12124-6 OPEN Mitochondrial supercomplex assembly promotes breast and endometrial tumorigenesis by metabolic alterations and enhanced hypoxia tolerance Kazuhiro Ikeda1, Kuniko Horie-Inoue1, Takashi Suzuki2, Rutsuko Hobo1,3, Norie Nakasato1,3, Satoru Takeda3,4 & Satoshi Inoue 1,5 1234567890():,; Recent advance in cancer research sheds light on the contribution of mitochondrial respiration in tumorigenesis, as they efficiently produce ATP and oncogenic metabolites that will facilitate cancer cell growth. Here we show that a stabilizing factor for mitochondrial supercomplex assembly, COX7RP/COX7A2L/SCAF1, is abundantly expressed in clinical breast and endometrial cancers. Moreover, COX7RP overexpression associates with prog- nosis of breast cancer patients. We demonstrate that COX7RP overexpression in breast and endometrial cancer cells promotes in vitro and in vivo growth, stabilizes mitochondrial supercomplex assembly even in hypoxic states, and increases hypoxia tolerance. Metabo- lomic analyses reveal that COX7RP overexpression modulates the metabolic profile of cancer cells, particularly the steady-state levels of tricarboxylic acid cycle intermediates. Notably, silencing of each subunit of the 2-oxoglutarate dehydrogenase complex decreases the COX7RP-stimulated cancer cell growth. Our results indicate that COX7RP is a growth- regulatory factor for breast and endometrial cancer cells by regulating metabolic pathways and energy production. 1 Division of Gene Regulation and Signal Transduction, Research Center for Genomic Medicine, Saitama Medical University, 1397-1 Yamane, Hidaka-shi, Saitama 350-1241, Japan. 2 Departments of Pathology and Histotechnology, Tohoku University Graduate School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan. 3 Department of Obstetrics and Gynecology, Saitama Medical Center, Saitama Medical University, 1981, Tsujido, Kamoda, Kawagoe-shi, Saitama 350-8550, Japan. -
Literature Mining Sustains and Enhances Knowledge Discovery from Omic Studies
LITERATURE MINING SUSTAINS AND ENHANCES KNOWLEDGE DISCOVERY FROM OMIC STUDIES by Rick Matthew Jordan B.S. Biology, University of Pittsburgh, 1996 M.S. Molecular Biology/Biotechnology, East Carolina University, 2001 M.S. Biomedical Informatics, University of Pittsburgh, 2005 Submitted to the Graduate Faculty of School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Pittsburgh 2016 UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE This dissertation was presented by Rick Matthew Jordan It was defended on December 2, 2015 and approved by Shyam Visweswaran, M.D., Ph.D., Associate Professor Rebecca Jacobson, M.D., M.S., Professor Songjian Lu, Ph.D., Assistant Professor Dissertation Advisor: Vanathi Gopalakrishnan, Ph.D., Associate Professor ii Copyright © by Rick Matthew Jordan 2016 iii LITERATURE MINING SUSTAINS AND ENHANCES KNOWLEDGE DISCOVERY FROM OMIC STUDIES Rick Matthew Jordan, M.S. University of Pittsburgh, 2016 Genomic, proteomic and other experimentally generated data from studies of biological systems aiming to discover disease biomarkers are currently analyzed without sufficient supporting evidence from the literature due to complexities associated with automated processing. Extracting prior knowledge about markers associated with biological sample types and disease states from the literature is tedious, and little research has been performed to understand how to use this knowledge to inform the generation of classification models from ‘omic’ data. Using pathway analysis methods to better understand the underlying biology of complex diseases such as breast and lung cancers is state-of-the-art. However, the problem of how to combine literature- mining evidence with pathway analysis evidence is an open problem in biomedical informatics research. -
Relationships Between Expression of BCS1L, Mitochondrial Bioenergetics, and Fatigue Among Patients with Prostate Cancer
Cancer Management and Research Dovepress open access to scientific and medical research Open Access Full Text Article ORIGINAL RESEARCH Relationships between expression of BCS1L, mitochondrial bioenergetics, and fatigue among patients with prostate cancer This article was published in the following Dove Press journal: Cancer Management and Research Chao-Pin Hsiao1,2 Introduction: Cancer-related fatigue (CRF) is the most debilitating symptom with the Mei-Kuang Chen3 greatest adverse side effect on quality of life. The etiology of this symptom is still not Martina L Veigl4 understood. The purpose of this study was to examine the relationship between mitochon- Rodney Ellis5 drial gene expression, mitochondrial oxidative phosphorylation, electron transport chain Matthew Cooney6 complex activity, and fatigue in prostate cancer patients undergoing radiotherapy (XRT), Barbara Daly1 compared to patients on active surveillance (AS). Methods: The study used a matched case–control and repeated-measures research design. Charles Hoppel7 Fatigue was measured using the revised Piper Fatigue Scale from 52 patients with prostate 1The Frances Payne Bolton School of cancer. Mitochondrial oxidative phosphorylation, electron-transport chain enzymatic activity, Nursing, Case Western Reserve ’ University, Cleveland, OH, USA; 2School and BCS1L gene expression were determined using patients peripheral mononuclear cells. of Nursing, Taipei Medical University, Data were collected at three time points and analyzed using repeated measures ANOVA. 3 Taipei , Taiwan; Department of Results: The fatigue score was significantly different over time between patients undergoing XRT Psychology, University of Arizona, fi Tucson, AZ, USA; 4Gene Expression & and AS (P<0.05). Patients undergoing XRT experienced signi cantly increased fatigue at day 21 Genotyping Facility, Case Comprehensive and day 42 of XRT (P<0.01). -
Apoptosis Induced by Microinjection of Cytochrome C Is Caspase-Dependent and Is Inhibited by Bcl-2
Cell Death and Differentiation (1998) 5, 660 ± 668 1998 Stockton Press All rights reserved 13509047/98 $12.00 http://www.stockton-press.co.uk/cdd Apoptosis induced by microinjection of cytochrome c is caspase-dependent and is inhibited by Bcl-2 Odd T. Brustugun1, Kari E. Fladmark1, Stein O. Dùskeland1,3, proteins, chromatin and RNA degradation, cell shrinkage and Sten Orrenius2 and Boris Zhivotovsky2 blebbing of cell membranes accompanied by the appearance of phosphatidyl serine on the outer surface of the plasma 1 Department of Anatomy and Cell Biology, University of Bergen, AÊ rstadveien 19, membrane. N-5009 Bergen, Norway The biochemical machinery involved in the killing and 2 Institute of Environmental Medicine, Division of Toxicology, Karolinska degradation of the cell is constitutively expressed. During Institutet, Box 210, S-171 77 Stockholm, Sweden the last few years the `main players' in the induction and 3 corresponding author: Department of Anatomy and Cell Biology, University of execution cascade of reactions in apoptotic cells were Bergen, AÊ rstadveien 19, N-5009 Bergen, Norway. tel: +47 55 58 63 76; fax: +47 55 58 63 60; e-mail: [email protected] identified as a family of aspartic acid-specific cysteine proteases, the caspases (Alnemri et al, 1996). Over- Received 26.11.97; revised 2.3.98; accepted 23.3.98 expression of any of these proteases leads to apoptotic Edited by G. Melino cell death. Moreover, mice deficient in caspase-3 have a striking defect in the extensive apoptosis that occurs during brain development. Peptide inhibitors of caspases can Abstract prevent apoptosis both in isolated cells and in in vivo Microinjection of cytochrome c induced apoptosis in all the models of development. -
E4F1 Controls a Transcriptional Program Essential for Pyruvate Dehydrogenase Activity
E4F1 controls a transcriptional program essential for pyruvate dehydrogenase activity Matthieu Lacroixa,b,c,d,e,1, Geneviève Rodiera,b,c,d,e,f,1, Olivier Kirshf,g,1, Thibault Houlesa,b,c,d,e,f,2, Hélène Delpecha,b,c,d,e,f,2, Berfin Seyrana,b,c,d,e, Laurie Gaytea,b,c,d,e, Francois Casasc,h, Laurence Pessemessec,h, Maud Heuilleti,j,k, Floriant Bellverti,j,k, Jean-Charles Portaisi,j,k, Charlene Bertheta,b,c,d,l, Florence Bernexa,b,c,d,l, Michele Brivetm, Audrey Boutronm, Laurent Le Cama,b,c,d,e,3,4, and Claude Sardeta,b,c,d,e,f,3,4 aInstitut de Recherche en Cancérologie de Montpellier, Montpellier F-34298, France; bINSERM, U1194, Montpellier F-34298, France; cUniversité Montpellier, Montpellier F-34090, France; dInstitut du Cancer Montpellier, Montpellier F-34298, France; eEquipe labellisée Ligue Contre le Cancer, 75013 Paris, France; fInstitut de Génétique Moléculaire de Montpellier, UMR5535, CNRS, Montpellier F-34293, France; gCNRS, UMR7216, Epigenetics and Cell Fate, University Paris Diderot, Sorbonne Paris Cite, 75013 Paris, France; hDynamique Musculaire et Métabolisme, Institut National de la Recherche Agronomique, UMR866, F-34060 Montpellier, France; iUniversité de Toulouse, Institut National des Sciences Appliquées, Université Paul Sabatié, Institut National Polytechnique, F-31077 Toulouse, France; jUMR792 Ingénierie des Systèmes Biologiques et des Procédés, Institut National de la Recherche Agronomique, F-31400 Toulouse, France; kCNRS, UMR5504, F-31400 Toulouse, France; lMontpellier Network of Experimental Histology, BioCampus, CNRS, UMS3426, F-34094 Montpellier, France; and mDepartment of Biochemistry, Bicêtre Hospital, 94270 Le Kremlin Bicetre, France Edited by Steven L. -
Bax Transmembrane Domain Interacts with Prosurvival Bcl-2 Proteins in Biological Membranes
Bax transmembrane domain interacts with prosurvival Bcl-2 proteins in biological membranes Vicente Andreu-Fernándeza,b,c, Mónica Sanchoa, Ainhoa Genovésa, Estefanía Lucendoa, Franziska Todtb, Joachim Lauterwasserb,d, Kathrin Funkb,d, Günther Jahreise, Enrique Pérez-Payáa,f,1, Ismael Mingarroc,2, Frank Edlichb,g,2, and Mar Orzáeza,2 aLaboratory of Peptide and Protein Chemistry, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain; bInstitute for Biochemistry and Molecular Biology, University of Freiburg, 79104 Freiburg, Germany; cDepartament de Bioquímica i Biologia Molecular, Estructura de Recerca Interdisciplinar en Biotecnología i Biomedicina, Universitat de València, 46100 Burjassot, Spain; dFaculty of Biology, University of Freiburg, 79104 Freiburg, Germany; eDepartment of Biochemistry/Biotechnology, Martin Luther University Halle-Wittenberg, 06120 Halle, Germany; fInstituto de Biomedicina de Valencia, Instituto de Biomedicina de Valencia–Consejo Superior de Investigaciones Científicas, 46010 Valencia, Spain; and gBIOSS, Centre for Biological Signaling Studies, University of Freiburg, 79104 Freiburg, Germany Edited by William F. DeGrado, School of Pharmacy, University of California, San Francisco, CA, and approved November 29, 2016 (received for review July 28, 2016) The Bcl-2 (B-cell lymphoma 2) protein Bax (Bcl-2 associated X, across bilayers via changes in the oligomeric state or protein con- apoptosis regulator) can commit cells to apoptosis via outer mito- formation (22–24). The Bax TMD targets fusion proteins to the chondrial membrane permeabilization. Bax activity is controlled in OMM; its deletion results in cytosolic Bax localization and impaired healthy cells by prosurvival Bcl-2 proteins. C-terminal Bax trans- Bax activity (25). Analysis of the active Bax membrane topology membrane domain interactions were implicated recently in Bax pore suggests that the TMD could play a central role in Bax oligomeri- formation. -
Pyruvate Dehydrogenase Deficiency in a Child with Motor Neuropathy
003 1-399819313303-0284$03.00/0 PEDIATRIC RESEARCH Vol. 33, No. 3, 1993 Copyright O 1993 International Pediatric Research Foundation, Inc. Prinled in U.S.A. Pyruvate Dehydrogenase Deficiency in a Child with Motor Neuropathy GISELE BONNE, CHANTAL BENELLI, LINDA DE MEIRLEIR, WILLY LISSENS, MICHELE CHAUSSAIN, MONIQUE DIRY, JEAN-PIERRE CLOT, GERARD PONSOT, VALERIE GEOFFROY, JEAN-PAUL LEROUX, AND CECILE MARSAC INSERM U 75, Faculte Neclter, 75015 Paris, France[G.B., M.D., J.P.L., C.M.], INSERM U 30, H6pital Neclter, 75015 Puri.~,France [C.B., J-P.C., V.G.];Lahoraroire de GenPtique, Vrije Universili Bruxelles, 1090 Bruxelles, Belgiz~rn[L.D.M., W.L.];and N6pital Saint Vincent de Paul, 75014 Paris, France [M.C., G.P/ ABSTRACT. We report the case of a boy who developed role in aerobic energy metabolism (1). It consists of multiple a motor neuropathy during infectious episodes at 18 mo copies of three catalytic enzymes: PDH El, which is composed and 3 y of age. When he was 7 y old, he suffered persistent of two a and two p subunits and uses thiamine pyrophosphate weakness and areflexia; his resting lactate and pyruvate as a coenzyme, PDH E2, and PDH E3. An additional protein X values were 3.65 mM and 398 pM, respectively (controls: is involved in the linkage of the different subunits (2). Two 1.1 f 0.3 mM and 90 f 22 pM), and an exercise test regulatory enzymes (PDH kinase and PDH phosphatase) catalyze demonstrated a lactic acidosis (13.6 mM, controls: 6.4 f the interconversion of the active, dephosphorylated and the 1.3 mM) with a high pyruvate level (537 pM; controls: 176 inactive, phosphorylated forms of PDH El (3).