Placental Morphology and the Cellular Brain in Mammalian Evolution

Total Page:16

File Type:pdf, Size:1020Kb

Placental Morphology and the Cellular Brain in Mammalian Evolution i PLACENTAL MORPHOLOGY AND THE CELLULAR BRAIN IN MAMMALIAN EVOLUTION by Eric Lewitus A Dissertation submitted in part fulfillment of the degree of Doctorate of Philosophy of Biological Anthropology University College London ii I, Eric Lewitus confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. iii – Harpo iv A major focus of evolutionary neurobiology has been on whether different regions of the eutherian brain evolve in concert, and how free the brain is to evolve independently of body plans. Since the eutherian brain is loosely modularized, such that one region is rarely isolated for specialization at the expense of others, but the design of modularization itself can be adapted by tweaking developmental programs, the degree to which brain regions must evolve in concert and can evolve independently may carry a deep phylogenetic signal. Using data collected from preserved brain tissue of 37 primate, 21 carnivore, and 15 other eutherian species (spanning 11 orders), I examined the phylogenetic level at which the proliferation of neurons and glia in the primary visual cortex and hippocampus proper, as well as granular layer volumes of the dentate gyrus and cerebellum, may be constrained by conserved developmental programs. In doing so, I was able to test for cellular signatures of (1) evolutionary changes in metabolic activity, (2) phylogenetic divergences, (3) specializations in behavior, and (4) developmental constraints. The degree to which disparate brain regions evolve in concert is shown to be generally conserved in Eutheria, although a derived ability to evolve regions independently is observed along the primate lineage. Using a separate dataset on placental and life-histroy character states, a comprehensive comparative phylogenetic approach was used to resolve relationships among five aspects of placental structure and to identify syndromes of placental morphology with life-history variables. My results support two discrete biological phenotypes of placental morphology and life- history, which are shown to have an evolutionary affect on allocortical, but not neocortical, brain organization. I have provided a new perspective on exploring how developmental constraints – acting both within and without the brain – may affect brain organization at the cellular level, and the extent to which those constraints have been adapted along certain eutherian lineages. v TABLE OF CONTENTS INTRODUCTION 1 CHAPTER 1: CELLULAR PROCESSES (HOW THE BRAIN EVOLVES) 4 Neurogenesis and cortical expansion 4 Glia 5 Brain metabolism 10 CHAPTER 2: THE COMPARATIVE METHOD IN NEUROSCIENCE 13 Brain scaling 13 Environment, behavior, and placentation 14 CHAPTER 3: HOW THE BRAIN EVOLVED 17 Homology 17 Mammalian brain 20 Total brain size 23 Regional brain size 26 Primate brain 30 Carnivore brain 35 CHAPTER 4: METHODOLOGY (BRAIN DATA) 37 Fractionator principle 37 Optical fractionator 38 Cavalieri volume estimator 41 Coefficient of error 41 Materials 43 Artifactual error 45 The effect of phylogeny on scaling 45 Data analysis 46 CHAPTER 5: PRIMARY VISUAL CORTEX 53 Anatomy 53 Evolution 55 Analysis I 65 Aim 65 vi Materials 65 Demarcation 65 Cell counting 65 Results I 68 Hypothesis and predictions 68 Cellular scaling patterns among taxonomic groups 68 Cellular scaling patterns within primates 69 Cellular scaling patterns among placental groups 72 Discussion I 74 Constraints on cellular densities in a limited cortical regions 74 Placentatation and the neocortex in eutheria 76 Specializations in primate motion-processing pathways show glia-neuron signatures 77 Body mass is a poor parameter for intelligence 80 CHAPTER 6: HIPPOCAMPUS 82 Structure 82 Circuitry 85 Evolution 85 Shared and derived functions 89 Analysis II 93 Aim 93 Materials 93 Demarcation of CA1-3 93 Demarcation of the dentate gyrus 93 Cell counting in CA1-3 94 Volumetric estimates of the dentate gyrus 95 Results II 96 Hypotheses and predictions 96 Scaling of the CA subfields in mammals 96 The CA subfields and the dentate gyrus 102 Human predictions for the cellular hippocampus based on primates and other mammals 103 Mode of placentation and the hippocampus 104 Discussion II 107 Fetal development regulates evolution of the hippocampus 107 vii CHAPTER 7: DEVELOPMENTAL CONSTRAINTS 110 Cerebellar function and evolution 111 Analysis III 116 Volumetric estimates of the cerebellum 116 Results III 117 Hypotheses and predictions 117 Regressors of the cerebellum 118 V1 and the hippocampal formation 119 Discussion III 121 Divorcing the cerebrum and the cerebellum 121 Constraints on cellular reorganization in diverse regions of the brain 123 CHAPTER 8: LIFE-HISTORY CORRELATES OF PLACENTAL EVOLUTION 125 Materials and methods 125 Definitions 130 Results IV 136 Ancestral reconstructions 136 Mutational mapping 138 Character associations 138 Discussion IV 141 Yolk sac and placental shape 142 Diffusion and exchange 143 Viviparity-driven and maternal-fetal conflicts 147 CONCLUSIONS 150 REFERENCES 152 APPENDIX TABLES A1 SUPPLEMENTAL FIGURES S1 viii LIST OF TABLES Table 1: List of species by taxonomy 47 Table 2: List of species by placental group 48 Table 3: Slope estimates and correlation coefficients in taxonomic groups for V1 70 Table 4: Hominoid predictions based on OLS regressions of Old and New World monkeys 71 Table 5: Human predictions based on OLS regressions of hominoids 72 Table 6: Slope estimates and correlation coefficients in taxonomic groups for the hippocampus 97 Table 7: Slope estimates and correlation coefficients in placental groups for the hippocampus 104 Table 8: Slope estimates and correlation coefficients in taxonomic groups between cerebellar and cerebral variables 118 Table 8: Slope estimates and correlation coefficients in taxonomic groups between V1 and the hippocampus 118 Table 10: Definitions of placental and life-history variables 126 Table 11: Ancestral reconstructions of placental character states 136 Table 12: Mutational mapping of placental character states 137 Table 13: Association statistics of placental character states 137 Table 14: Constellations of placental and life-history variables 140 APPENDIX TABLES Table A1a: Stereological results for carnivores and AS A2 Table A1b: Anatomical variables for carnivores and AS A3 Table A1c: Stereological results for primates A4 Table A1d: Anatomical variables for primates A5 Table A2: Slope estimates and correlation coefficients in placental groups for V1 A6 Table A3: Stepwise AIC regression models for CA1-3 A7 Table A4a: Stepwise AIC regression models for all brain regions in AS A8 Table A4b: Stepwise AIC regression models for all brain regions in carnivores A9 Table A4c: Stepwise AIC regression models for all brain regions in primates A10 Table A6a: Placental data matrix A11 Table A6b: Categories for variables in placental matrix A12 Table A7: Categories and ranges for discrete life-history variables A12 Table A8: Life-history data matrix A13 ix Table A9a: Definitions of life-history variables A14 Table A9b: Residuals of life-history variables after size correction A15 Table A10a: Association statistics for uterus A16 Table A10b: Association statistics for placental shape A17 Table A10c: Association statistics for maternofetal interdigitation A18 Table A10d: Association statistics for interhemal barrier A19 Table A10e: Association statistics for yolk sac A20 x LIST OF FIGURES Figure 1: Supragranular layers of the subventricular zone 6 Figure 2: Myelin sheathing of axons 9 Figure 3: Derived features of the mammalian brain 21 Figure 4: Three-dimensional disector 39 Figure 5: Optical fractionator 40 Figure 6: Point-grid system for Cavalieri method 44 Figure 7: Photograph of mounted slides 46 Figure 8: Phylogeny of species sample for brain data 49 Figure 9: Subdivisions of the visual cortex 55 Figure 10: Layers of the primary visual cortex 56 Figure 11: Schematic of honeycomb model of layer IVa organization 61 Figure 12: Evolution of layer IVa in Haplorrhini 62 Figure 13: Boundaries of the primary visual cortex 66 Figure 14: Identification of neurons and glia in the primary visual cortex 67 Figure 15: Bar graph of cellular densities in V1 69 Figure 16: Scaling of glia on neuron density and glia-neuron ratio on brain mass in V1 for taxonomic groups 73 Figure 17: Position, structure, and composition of the hippocampal formation 83 Figure 18: Layers of the hippocampus proper 84 Figure 19a: Relative importance metrics and recursive trees for glia-neuron ratio in CA1-3 for AS 98 Figure 19b: Relative importance metrics and recursive trees for glia-neuron ratio in CA1-3 for carnivores 99 Figure 19c: Relative importance metrics and recursive trees for glia-neuron ratio in CA1-3 for primates 100 Figure 20: Bar graph of hippocampal variables 101 Figure 21: Scaling of dentate gyrus as a function of brain mass in taxonomic groups 102 Figure 22: Scaling of glia on neuron density in CA1-3 for primates 103 Figure 23: Scaling of glia on neuron density and glia-neuron ratio on brain mass in CA1-3 for taxonomic groups 105 Figure 24: Scaling of dentate gyrus as a function of brain mass in placental groups 106 Figure 25: Y-intercepts of glia on neuron density for primates and other mammals 108 Figure 26: Gross anatomy of the cerebellum 112 Figure 27: Demarcation of the granule cell layer of the cerebellum 113 xi Figure 28: Scaling of dentate gyrus with cerebellum in taxonomic groups 119 Figure 29: Scaling of glia density, neuron density, and glia-neuron
Recommended publications
  • Cell Migration in the Developing Rodent Olfactory System
    Cell. Mol. Life Sci. (2016) 73:2467–2490 DOI 10.1007/s00018-016-2172-7 Cellular and Molecular Life Sciences REVIEW Cell migration in the developing rodent olfactory system 1,2 1 Dhananjay Huilgol • Shubha Tole Received: 16 August 2015 / Revised: 8 February 2016 / Accepted: 1 March 2016 / Published online: 18 March 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract The components of the nervous system are Abbreviations assembled in development by the process of cell migration. AEP Anterior entopeduncular area Although the principles of cell migration are conserved AH Anterior hypothalamic nucleus throughout the brain, different subsystems may predomi- AOB Accessory olfactory bulb nantly utilize specific migratory mechanisms, or may aAOB Anterior division, accessory olfactory bulb display unusual features during migration. Examining these pAOB Posterior division, accessory olfactory bulb subsystems offers not only the potential for insights into AON Anterior olfactory nucleus the development of the system, but may also help in aSVZ Anterior sub-ventricular zone understanding disorders arising from aberrant cell migra- BAOT Bed nucleus of accessory olfactory tract tion. The olfactory system is an ancient sensory circuit that BST Bed nucleus of stria terminalis is essential for the survival and reproduction of a species. BSTL Bed nucleus of stria terminalis, lateral The organization of this circuit displays many evolution- division arily conserved features in vertebrates, including molecular BSTM Bed nucleus of stria terminalis, medial mechanisms and complex migratory pathways. In this division review, we describe the elaborate migrations that populate BSTMa Bed nucleus of stria terminalis, medial each component of the olfactory system in rodents and division, anterior portion compare them with those described in the well-studied BSTMpl Bed nucleus of stria terminalis, medial neocortex.
    [Show full text]
  • Visual Impairment in the Absence of Dystroglycan
    13136 • The Journal of Neuroscience, October 21, 2009 • 29(42):13136–13146 Neurobiology of Disease Visual Impairment in the Absence of Dystroglycan Jakob S. Satz,1,2,3,4 Alisdair R. Philp,1,6 Huy Nguyen,5 Hajime Kusano,1,2,3,4 Jane Lee,1,2,3,4 Rolf Turk,1,2,3,4 Megan J. Riker,6 Jasmine Herna´ndez,6 Robert M. Weiss,4 Michael G. Anderson,2,6 Robert F. Mullins,6 Steven A. Moore,5 Edwin M. Stone,1,6 and Kevin P. Campbell1,2,3,4 1Howard Hughes Medical Institute and Departments of 2Molecular Physiology and Biophysics, 3Neurology, 4Internal Medicine, 5Pathology, and 6Ophthalmology and Visual Sciences, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242 Ocular involvement in muscular dystrophy ranges from structural defects to abnormal electroretinograms. While the mechanisms underlyingtheabnormalretinalphysiologyinpatientsarenotunderstood,itisthoughtthat␣-dystroglycanextracellularinteractionsare critical for normal visual function. Here we show that ␤-dystroglycan anchors dystrophin and the inward rectifying K ϩ channel Kir4.1 at glial endfeet and that disruption of dystrophin and potassium channel clustering in dystroglycan mutant mice is associated with an attenuationoftheelectroretinogramb-wave.Glial-specificinactivationofdystroglycanordeletionofthecytoplasmicdomainof␤-dystroglycan was sufficient to attenuate the electroretinogram b-wave. Unexpectedly, deletion of the ␤-dystroglycan cytoplasmic domain did not disrupt the laminar structure of the retina. In contrast to the role of ␣-dystroglycan extracellular interactions during early development of the CNS, ␤-dystroglycan intracellular interactions are important for visual function but not the laminar development of the retina. Introduction and dystrobrevin (Ervasti and Campbell, 1991; Ibraghimov- Muscular dystrophies with ocular involvement are associated Beskrovnaya et al., 1992; Cohn and Campbell, 2000).
    [Show full text]
  • Structure of the Ovaries of the Nimba Otter Shrew, Micropotamogale Lamottei , and the Madagascar Hedgehog Tenrec, Echinops Telfairi
    Original Paper Cells Tissues Organs 2005;179:179–191 Accepted after revision: March 7, 2005 DOI: 10.1159/000085953 Structure of the Ovaries of the Nimba Otter Shrew, Micropotamogale lamottei , and the Madagascar Hedgehog Tenrec, Echinops telfairi a b c d A.C. Enders A.M. Carter H. Künzle P. Vogel a Department of Cell Biology and Human Anatomy, University of California, Davis, Calif. , USA; b Department of Physiology and Pharmacology, University of Southern Denmark, Odense , Denmark; c d Department of Anatomy, University of Munich, München , Germany, and Department of Ecology and Evolution, University of Lausanne, Lausanne , Switzerland Key Words es between the more peripheral granulosa cells. It is sug- Corpora lutea Non-antral follicles Ovarian gested that this fl uid could aid in separation of the cu- lobulation Afrotheria mulus from the remaining granulosa at ovulation. The protruding follicles in lobules and absence of a tunica albuginea might also facilitate ovulation of non-antral Abstract follicles. Ovaries with a thin-absent tunica albuginea and The otter shrews are members of the subfamily Potamo- follicles with small-absent antra are widespread within galinae within the family Tenrecidae. No description of both the Eulipotyphla and in the Afrosoricida, suggest- the ovaries of any member of this subfamily has been ing that such features may represent a primitive condi- published previously. The lesser hedgehog tenrec, Echi- tion in ovarian development. Lobulated and deeply nops telfairi, is a member of the subfamily Tenrecinae of crypted ovaries are found in both groups but are not as the same family and, although its ovaries have not been common in the Eulipotyphla making inclusion of this fea- described, other members of this subfamily have been ture as primitive more speculative.
    [Show full text]
  • Dynamic Changes in the Localization of Synapse Associated Proteins
    Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1999 Dynamic changes in the localization of synapse associated proteins during development and differentiation of the mammalian retina Mary Heather West Greenlee Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Cell Biology Commons, Molecular Biology Commons, Neuroscience and Neurobiology Commons, and the Ophthalmology Commons Recommended Citation Greenlee, Mary Heather West, "Dynamic changes in the localization of synapse associated proteins during development and differentiation of the mammalian retina " (1999). Retrospective Theses and Dissertations. 12625. https://lib.dr.iastate.edu/rtd/12625 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly fijom the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter fiice, ^xiule others may be from any type of conq>uter printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion.
    [Show full text]
  • Zeitschrift Für Säugetierkunde)
    ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Mammalian Biology (früher Zeitschrift für Säugetierkunde) Jahr/Year: 1981 Band/Volume: 47 Autor(en)/Author(s): Stephan Heinz, Kuhn Hans-Jürg Artikel/Article: The brain of Micropotamogale lamottei Heim de Balsac, 1954 129-142 © Biodiversity Heritage Library, http://www.biodiversitylibrary.org/ The brain of Micropotamogale lamottei Heim de Balsac, 1954 By H. Stephan and H.-J. Kuhn Max-Planck-Institut für Hirnforschung, Neurohiologische Abteilung, Frankfurt a. M. and Anatomisches Institut der Universität, Göttingen Receipt of Ms. 8. 12. 1981 Abstract Studied the brain of Micropotamogale lamottei. It differs markedly from the brains of "average Insectivora" by less developed olfactory structures and a larger meduUa oblongata. The large size of the latter is caused by a marked enlargement of the nucleus of the spinal trigeminal tract. Since similar characteristics are present in all water-adapted Insectivora, such as Limnogale, Potamogale, Neomys, Desmana, and Galemys, they are thought to be related to predatory habits in limnetic ecosystems. The trigeminal System, innervating the strongly developed vibrissae of the muzzle, is thought to replace the olfactory system in water-adapted Insectivora and to become the main sensory System involved in searching for food. Within the otter-shrews, the enlargement of the medulla oblongata and the concomitant reduction of the olfactory structures are in M. lamottei less marked than in Potamogale velox. Similarities in the brain characteristics of M. lamottei are with the shrew-like tenrecs of Madagascar (Oryzorictinae). Introduction The african water or otter-shrews comprise two genera {Micropotamogale and Potamogale) and three species {M.
    [Show full text]
  • ATF5 Deficiency Causes Abnormal Cortical Development
    www.nature.com/scientificreports OPEN ATF5 defciency causes abnormal cortical development Mariko Umemura*, Yasuyuki Kaneko, Ryoko Tanabe & Yuji Takahashi Activating transcription factor 5 (ATF5) is a member of the cAMP response element binding protein (CREB)/ATF family of basic leucine zipper transcription factors. We previously reported that ATF5- defcient (ATF5−/−) mice exhibited behavioural abnormalities, including abnormal social interactions, reduced behavioural fexibility, increased anxiety-like behaviours, and hyperactivity in novel environments. ATF5−/− mice may therefore be a useful animal model for psychiatric disorders. ATF5 is highly expressed in the ventricular zone and subventricular zone during cortical development, but its physiological role in higher-order brain structures remains unknown. To investigate the cause of abnormal behaviours exhibited by ATF5−/− mice, we analysed the embryonic cerebral cortex of ATF5−/− mice. The ATF5−/− embryonic cerebral cortex was slightly thinner and had reduced numbers of radial glial cells and neural progenitor cells, compared to a wild-type cerebral cortex. ATF5 defciency also afected the basal processes of radial glial cells, which serve as a scafold for radial migration during cortical development. Further, the radial migration of cortical upper layer neurons was impaired in ATF5−/− mice. These results suggest that ATF5 defciency afects cortical development and radial migration, which may partly contribute to the observed abnormal behaviours. Activating transcription factor 5 (ATF5) is a member of the cAMP response element binding protein (CREB)/ ATF family of basic leucine zipper transcription factors1. Our group and others have reported that ATF5 is a stress responsive transcription factor under conditions such as endoplasmic reticulum (ER) stress and oxidative stress2–4.
    [Show full text]
  • AFROTHERIAN CONSERVATION Newsletter of the IUCN/SSC Afrotheria Specialist Group
    AFROTHERIAN CONSERVATION Newsletter of the IUCN/SSC Afrotheria Specialist Group Number 10 Edited by PJ Stephenson September 2014 Afrotherian Conservation is published annually by the Speaking of our website, it was over ten years old IUCN Species Survival Commission Afrotheria Specialist and suffering from outdated material and old technology, Group to promote the exchange of news and inform- making it very difficult to maintain. Charles Fox, who ation on the conservation of, and applied research into, does our web maintenance at a hugely discounted cost golden moles, sengis, hyraxes, tenrecs and the aardvark. (many thanks Charles), has reworked the site, especially the design of the home page and conservation page Published by IUCN, Gland, Switzerland. (thanks to Rob Asher for his past efforts with the latter © 2014 International Union for Conservation of Nature material, which is still the basis for the new conservation and Natural Resources page). Because some of the hyrax material was dated, Lee ISSN: 1664-6754 Koren and her colleagues completely updated the hyrax material, and we have now linked our websites. A similar Find out more about the Group on our website at update is being discussed by Tom Lehmann and his http://afrotheria.net/ASG.html and follow us on colleagues for the aardvark link. The sengi web material is Twitter @Tweeting_Tenrec largely unchanged, with the exception of updating various pages to accommodate the description of a new species from Namibia (go to the current topics tab in the Message from the Chair sengi section). Galen Rathbun Although a lot of effort has focused on our Chair, IUCN/SSC Afrotheria Specialist Group group's education goals (logo, website, newsletter), it has not over-shadowed one of the other major functions that There has been a long time gap since our last newsletter our specialist group performs: the periodic update of the was produced in October 2012.
    [Show full text]
  • Informes Individuales IUCN 2018.Indd
    IUCN SSC Afrotheria Specialist Group 2018 Report Galen Rathbun Andrew Taylor Co-Chairs Mission statement of golden moles in species where it is neces- Galen Rathbun (1) The IUCN SSC Afrotheria Specialist Group (ASG) sary (e.g., Amblysomus and Neamblysomus Andrew Taylor (2) facilitates the conservation of hyraxes, aard- species); (3) collect basic data for 3-4 golden varks, elephant-shrews or sengis, golden moles, mole species, including geographic distributions Red List Authority Coordinator tenrecs and their habitats by: (1) providing and natural history data; (4) conduct surveys to determine distribution and abundance of Matthew Child (3) sound scientific advice and guidance to conser- vationists, governments, and other inter- five hyrax species; (5) revise taxonomy of five hyrax species; (6) develop and assess field trials Location/Affiliation ested groups; (2) raising public awareness; for standardised camera trapping methods (1) California Academy of Sciences, and (3) developing research and conservation to determine population estimates for giant California, US programmes. sengis; (7) conduct surveys to assess distribu- (2) The Endangered Wildlife Trust, tion, abundance, threats and taxonomic status Modderfontein, Johannesburg, South Africa Projected impact for the 2017-2020 of the Data Deficient sengi species; (8) build on (3) South African National Biodiversity Institute quadrennium current research to determine the systematics (SANBI), Kirstenbosch National Botanical If the ASG achieved all of its targets, it would be of giant sengis, especially Rhynchocyon Garden, Newlands Cape Town, South Africa able to deliver more accurate, data-driven Red species; (9) survey Aardvark (Orycteropus afer) List assessments for more Afrotherian species populations to determine abundance, distribu- Number of members and, therefore, be in a better position to move tion and trends; (10) conduct taxonomic studies 34 to conservation planning, especially for priority to determine the systematics of aardvarks, with species.
    [Show full text]
  • Protein Sequence Signatures Support the African Clade of Mammals
    Protein sequence signatures support the African clade of mammals Marjon A. M. van Dijk*, Ole Madsen*, Franc¸ois Catzeflis†, Michael J. Stanhope‡, Wilfried W. de Jong*§¶, and Mark Pagel¶ʈ *Department of Biochemistry, University of Nijmegen, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands; †Institut des Sciences de l’E´ volution, Universite´Montpellier 2, 34095 Montpellier, France; ‡Queen’s University of Belfast, Biology and Biochemistry, Belfast BT9 7BL, United Kingdom; §Institute for Systematics and Population Biology, University of Amsterdam, 1090 GT Amsterdam, The Netherlands; and ʈSchool of Animal and Microbial Sciences, University of Reading, Whiteknights, Reading RG6 6AJ, United Kingdom Edited by Elwyn L. Simons, Duke University Primate Center, Durham, NC, and approved October 9, 2000 (received for review May 12, 2000) DNA sequence evidence supports a superordinal clade of mammals subfamily living outside of Madagascar. To assess the signifi- that comprises elephants, sea cows, hyraxes, aardvarks, elephant cance of the candidate signatures, we use likelihood methods shrews, golden moles, and tenrecs, which all have their origins in (20) to reconstruct their most probable ancestral states at the Africa, and therefore are dubbed Afrotheria. Morphologically, this basal node of the Afrotherian clade. These calculations use a appears an unlikely assemblage, which challenges—by including phylogeny reconstructed independently of the protein under golden moles and tenrecs—the monophyly of the order Lipotyphla investigation. We further use likelihood and combinatorial meth- (Insectivora). We here identify in three proteins unique combina- ods to estimate the probability of the signatures on three tions of apomorphous amino acid replacements that support this alternative morphology-based trees that are incompatible with clade.
    [Show full text]
  • Formation and Function of Neural Circuits Underlying Visual and Locomotor Behaviors Woods Hole Zebrafish Course – August 17, 2013
    Visual & Motor Behaviors- 8-17-2013 Formation and function of neural circuits underlying visual and locomotor behaviors Woods Hole Zebrafish Course – August 17, 2013 Instructors for visual behaviors sections: Jim Fadool ([email protected]) John Dowling ([email protected]) Instructors for motor behaviors sections: Michael Granato ( [email protected] ) Roshan Jain ([email protected]) Marc Wolman ([email protected]) Overview: In this last part of the course, we focus on the formation and function of neural circuits underlying visual and locomotor behaviors. It is therefore important to ask: What are the advantages of zebrafish for studies of neuronal circuits and behavior? - the transparency of the embryo and larvae, which has made them so useful in screening for developmental defects, also allows for optical studies of their neuronal circuits. - the simplicity of the nervous system (compared to other vertebrate model systems) and the detailed maps of identified spinal cord and hindbrain neurons allow the study of circuits and behavior at a single cell resolution. -the extrauterine development facilitates a number of powerful techniques, including single cell recording, labeling of individual neurons and their projections, application of drugs, and lesion experiments using sharp needles or a laser beam. - the development of genetic constructs such as channelrhodopsin and halorhodopsin allow for optical activation and silencing of neurons. - the availability of mutants and transgenic lines and the ease with which they can be generated. Together, these represent an unparalleled spectrum of techniques available to study the many different aspects of neural circuits and behavior in a single, intact vertebrate.
    [Show full text]
  • Engineering Region-Specific Brain Organoids from Human Stem Cells to Study Neural Development and Disease
    CHAPTER TWELVE Building the brain from scratch: Engineering region-specific brain organoids from human stem cells to study neural development and disease Fadi Jacoba,b,c, Jordan G. Schnolla, Hongjun Songa,d,e,f, and Guo-li Minga,d,e,g,* aDepartment of Neuroscience and Mahoney Institute for Neurosciences, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States bThe Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, United States cMedical Scientist Training Program, Johns Hopkins University School of Medicine, Baltimore, MD, United States dDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States eInstitute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA, United States fThe Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States gDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States *Corresponding author: e-mail address: [email protected] Contents 1. Introduction 478 1.1 Fundamentals of mammalian brain development 479 1.2 Human-specific features 482 1.3 Comparison of in vitro human cell models 482 2. Generation of region-specific brain organoids from human stem cells 484 2.1 Unguided differentiation: Cerebral organoids 484 2.2 Guided differentiation: Region-specific brain organoids 489 3. Advancements in cellular complexity of brain organoids 496 3.1 Fusion of region-specific brain organoids 497 3.2 Enhancing glial cell production and maturation 499 3.3 Reconstitution of resident immune cells and vasculature 500 3.4 Technical modifications for long-term culture 501 3.5 In vivo orthotopic xenotransplantation 503 4.
    [Show full text]
  • Brain-Derived Neurotrophic Factor Participates in Determination of Neuronal Laminar Fate in the Developing Mouse Cerebral Cortex
    13218 • The Journal of Neuroscience, December 20, 2006 • 26(51):13218–13230 Development/Plasticity/Repair Brain-Derived Neurotrophic Factor Participates in Determination of Neuronal Laminar Fate in the Developing Mouse Cerebral Cortex Hidefumi Fukumitsu,1 Masanari Ohtsuka,1 Rina Murai,1 Hiroyuki Nakamura,2 Kazuo Itoh,2 Shoei Furukawa1 1Laboratory of Molecular Biology, Gifu Pharmaceutical University, Gifu 502-8585, Japan, and 2Department of Morphological Neuroscience, Gifu University Graduate School of Medical Science, Gifu 501-1194, Japan Lamina formation in the developing cerebral cortex requires precisely regulated generation and migration of the cortical progenitor cells. To test the possible involvement of brain-derived neurotrophic factor (BDNF) in the formation of the cortical lamina, we investigated the effects of BDNF protein and anti-BDNF antibody separately administered into the telencephalic ventricular space of 13.5-d-old mouse embryos. BDNF altered the position, gene-expression properties, and projections of neurons otherwise destined for layer IV to those of neurons for the deeper layers, V and VI, of the cerebral cortex, whereas anti-BDNF antibody changed some of those of neurons of upper layers II/III. Additional analysis revealed that BDNF altered the laminar fate of neurons only if their parent progenitor cells were exposed to it at approximately S-phase and that it hastened the timing of the withdrawal of their daughter neurons from the ventricular prolifer- ating pool by accelerating the completion of S-phase, downregulation of the Pax6 (paired box gene 6) expression, an essential transcrip- tion factor for generation of the upper layer neurons, and interkinetic nuclear migration of cortical progenitors in the ventricular zone.
    [Show full text]