With Antibacterial Peptides Gram-Negative Bacteria and Are
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Preparation of Recombinant Rat Eosinophil-Associated Ribonuclease-1 and -2 and Analysis of Their Biological Activities
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1638 (2003) 164–172 www.bba-direct.com Preparation of recombinant rat eosinophil-associated ribonuclease-1 and -2 and analysis of their biological activities Kenji Ishiharaa, Kanako Asaia, Masahiro Nakajimaa, Suetsugu Mueb, Kazuo Ohuchia,* a Laboratory of Pathophysiological Biochemistry, Graduate School of Pharmaceutical Sciences, Tohoku University, Aoba Aramaki, Aoba-ku, Sendai, Miyagi 980-8578, Japan b Department of Health and Welfare Science, Faculty of Physical Education, Sendai College, Funaoka, Shibata, Miyagi 989-1693, Japan Received 4 July 2002; received in revised form 22 April 2003; accepted 2 May 2003 Abstract Rat eosinophils contain eosinophil-associated ribonucleases (Ears) in their granules. Ears are thought to be synthesized as pre-forms and stored in the granules as mature forms. However, the N-terminal amino acid of mature Ear-1 and Ear-2 is still controversial. Therefore, we prepared two recombinant mature forms of Ear-1 and Ear-2 in which the N-terminal amino acids are Ser24 (S) [Ear-1 (S) and Ear-2 (S)] and Gln26 (Q) [Ear-1 (Q) and Ear-2 (Q)], and analyzed their biological activities by comparing them with those of pre-form Ear-1 and pre-form Ear-2. The four mature Ears showed RNase A activity as well as bovine pancreatic RNase A activity, but pre-Ear-1 and pre-Ear-2 showed no RNase A activity. Mature Ear-1 (Q) and mature Ear-2 (Q) showed more potent RNase A activity than mature Ear-1 (S) and mature Ear-2 (S), respectively. -
A Bioinformatic Study of Antimicrobial Peptides Identified in The
www.nature.com/scientificreports OPEN A bioinformatic study of antimicrobial peptides identifed in the Black Soldier Fly (BSF) Hermetia illucens (Diptera: Stratiomyidae) Antonio Moretta1, Rosanna Salvia1, Carmen Scieuzo1, Angela Di Somma2, Heiko Vogel3, Pietro Pucci4, Alessandro Sgambato5,6, Michael Wolf7 & Patrizia Falabella1* Antimicrobial peptides (AMPs) play a key role in the innate immunity, the frst line of defense against bacteria, fungi, and viruses. AMPs are small molecules, ranging from 10 to 100 amino acid residues produced by all living organisms. Because of their wide biodiversity, insects are among the richest and most innovative sources for AMPs. In particular, the insect Hermetia illucens (Diptera: Stratiomyidae) shows an extraordinary ability to live in hostile environments, as it feeds on decaying substrates, which are rich in microbial colonies, and is one of the most promising sources for AMPs. The larvae and the combined adult male and female H. illucens transcriptomes were examined, and all the sequences, putatively encoding AMPs, were analysed with diferent machine learning-algorithms, such as the Support Vector Machine, the Discriminant Analysis, the Artifcial Neural Network, and the Random Forest available on the CAMP database, in order to predict their antimicrobial activity. Moreover, the iACP tool, the AVPpred, and the Antifp servers were used to predict the anticancer, the antiviral, and the antifungal activities, respectively. The related physicochemical properties were evaluated with the Antimicrobial Peptide Database Calculator and Predictor. These analyses allowed to identify 57 putatively active peptides suitable for subsequent experimental validation studies. With over one million described species, insects represent the most diverse as well as the largest class of organ- isms in the world, due to their ability to adapt to recurrent changes and to their resistance against a wide spectrum of pathogens1. -
Kaistella Soli Sp. Nov., Isolated from Oil-Contaminated Soil
A001 Kaistella soli sp. nov., Isolated from Oil-contaminated Soil Dhiraj Kumar Chaudhary1, Ram Hari Dahal2, Dong-Uk Kim3, and Yongseok Hong1* 1Department of Environmental Engineering, Korea University Sejong Campus, 2Department of Microbiology, School of Medicine, Kyungpook National University, 3Department of Biological Science, College of Science and Engineering, Sangji University A light yellow-colored, rod-shaped bacterial strain DKR-2T was isolated from oil-contaminated experimental soil. The strain was Gram-stain-negative, catalase and oxidase positive, and grew at temperature 10–35°C, at pH 6.0– 9.0, and at 0–1.5% (w/v) NaCl concentration. The phylogenetic analysis and 16S rRNA gene sequence analysis suggested that the strain DKR-2T was affiliated to the genus Kaistella, with the closest species being Kaistella haifensis H38T (97.6% sequence similarity). The chemotaxonomic profiles revealed the presence of phosphatidylethanolamine as the principal polar lipids;iso-C15:0, antiso-C15:0, and summed feature 9 (iso-C17:1 9c and/or C16:0 10-methyl) as the main fatty acids; and menaquinone-6 as a major menaquinone. The DNA G + C content was 39.5%. In addition, the average nucleotide identity (ANIu) and in silico DNA–DNA hybridization (dDDH) relatedness values between strain DKR-2T and phylogenically closest members were below the threshold values for species delineation. The polyphasic taxonomic features illustrated in this study clearly implied that strain DKR-2T represents a novel species in the genus Kaistella, for which the name Kaistella soli sp. nov. is proposed with the type strain DKR-2T (= KACC 22070T = NBRC 114725T). [This study was supported by Creative Challenge Research Foundation Support Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF- 2020R1I1A1A01071920).] A002 Chitinibacter bivalviorum sp. -
Redox Active Antimicrobial Peptides in Controlling Growth of Microorganisms at Body Barriers
antioxidants Review Redox Active Antimicrobial Peptides in Controlling Growth of Microorganisms at Body Barriers Piotr Brzoza 1 , Urszula Godlewska 1,† , Arkadiusz Borek 2, Agnieszka Morytko 1, Aneta Zegar 1 , Patrycja Kwiecinska 1 , Brian A. Zabel 3, Artur Osyczka 2, Mateusz Kwitniewski 1 and Joanna Cichy 1,* 1 Department of Immunology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387 Kraków, Poland; [email protected] (P.B.); [email protected] (U.G.); [email protected] (A.M.); [email protected] (A.Z.); [email protected] (P.K.); [email protected] (M.K.) 2 Department of Molecular Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387 Kraków, Poland; [email protected] (A.B.); [email protected] (A.O.) 3 Palo Alto Veterans Institute for Research, VA Palo Alto Health Care System, Palo Alto, CA 94304, USA; [email protected] * Correspondence: [email protected] † Present address: Laboratory of Molecular Biology, Faculty of Physiotherapy, The Jerzy Kukuczka Academy of Physical Education, 40-065 Katowice, Poland. Abstract: Epithelia in the skin, gut and other environmentally exposed organs display a variety of mechanisms to control microbial communities and limit potential pathogenic microbial invasion. Naturally occurring antimicrobial proteins/peptides and their synthetic derivatives (here collectively Citation: Brzoza, P.; Godlewska, U.; referred to as AMPs) reinforce the antimicrobial barrier function of epithelial cells. Understanding Borek, A.; Morytko, A.; Zegar, A.; how these AMPs are functionally regulated may be important for new therapeutic approaches to Kwiecinska, P.; Zabel, B.A.; Osyczka, A.; Kwitniewski, M.; Cichy, J. -
Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation
City University of New York (CUNY) CUNY Academic Works Open Educational Resources Queensborough Community College 2016 Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation Joan Petersen CUNY Queensborough Community College Susan McLaughlin CUNY Queensborough Community College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/qb_oers/16 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation By Dr. Susan McLaughlin & Dr. Joan Petersen Queensborough Community College Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation Table of Contents Preface………………………………………………………………………………………i Acknowledgments…………………………………………………………………………..ii Microbiology Lab Safety Instructions…………………………………………………...... iii Lab 1. Introduction to Microscopy and Diversity of Cell Types……………………......... 1 Lab 2. Introduction to Aseptic Techniques and Growth Media………………………...... 19 Lab 3. Preparation of Bacterial Smears and Introduction to Staining…………………...... 37 Lab 4. Acid fast and Endospore Staining……………………………………………......... 49 Lab 5. Metabolic Activities of Bacteria…………………………………………….…....... 59 Lab 6. Dichotomous Keys……………………………………………………………......... 77 Lab 7. The Effect of Physical Factors on Microbial Growth……………………………... 85 Lab 8. Chemical Control of Microbial Growth—Disinfectants and Antibiotics…………. 99 Lab 9. The Microbiology of Milk and Food………………………………………………. 111 Lab 10. The Eukaryotes………………………………………………………………........ 123 Lab 11. Clinical Microbiology I; Anaerobic pathogens; Vectors of Infectious Disease….. 141 Lab 12. Clinical Microbiology II—Immunology and the Biolog System………………… 153 Lab 13. Putting it all Together: Case Studies in Microbiology…………………………… 163 Appendix I. -
Exploring the Mechanism of Action of Human Antimicrobial Ribonucleases
Doctoral thesis EXPLORING THE MECHANISM OF ACTION OF HUMAN ANTIMICROBIAL RIBONUCLEASES VIVIAN ANGÉLICA SALAZAR MONTOYA Barcelona, 2015 EXPLORING THE MECHANISM OF ACTION OF HUMAN ANTIMICROBIAL RIBONUCLEASES Tesis presentada por Vivian Angélica Salazar Montoya para optar al grado de Doctor en Bioquímica y Biología Molecular. Dirección de Tesis: Dra. Ester Boix y Dr. Mohamed Moussaoui Dra. Ester Boix Borras Dr. Mohamed Moussaoui Vivian A. Salazar M Departamento de Bioquímica y Biología Molecular Facultad de Biociencias Cerdanyola del Vallès Barcelona, España 2015 List of papers included in the thesis Protein post-translational modification in host defence: the antimicrobial mechanism of action of human eosinophil cationic protein native forms. Salazar VA, Rubin J, Moussaoui M, Pulido D, Nogués MV, Venge P and Boix E. (2014). FEBS Journal 281 (24): 5432–46 Human secretory RNases as multifaceted antimicrobial proteins. Exploring RNase 3 and RNase 7 mechanism of action against Candida albicans. Salazar VA, Arranz J, Navarro S, Sánchez D, Nogués MV, Moussaoui M and Boix E. Submitted to Molecular Microbiology List of other papers related to the thesis Structural determinants of the eosinophil cationic protein antimicrobial activity. Boix E, Salazar VA, Torrent M, Pulido D, Nogués MV, Moussaoui M. (2012). Biological Chemistry 393 (8):801-815. “Searching for heparin Binding Partners” in Heparin: Properties, Uses and Side effects. Boix E, Torrent M, Nogués MV, Salazar V. Nova Science Publisher (2012): 133-157. Related structures submitted to the Protein Data Bank 4OXF Structure of ECP in complex with citrate ions at 1.50 Å 4OWZ Structure of ECP/H15A mutant GENERAL INDEX ABBREVIATIONS.......................................................................................................... i RESUMEN ..................................................................................................................... -
Micrococcus Luteus (Schroeter 1872) Cohn 1872, and Desig- Nation of the Neotype Strain M
INTERNATIONAL JOURNAL of SYSTEMATIC BACTERIOLOGY Vol. 22, No. 4 October 1972, p. 218-223 Printed in U.S.A. Copyright 0 1972 International Association of Microbiological Societies Taxonomic Status of Micrococcus luteus (Schroeter 1872) Cohn 1872, and Desig- nation of the Neotype Strain M. KOCUR, ZDENA PkCOVA, and T. MARTINEC Czechoslovak Collection of Microorganisms, J. E. PurkynE University, Brno, Czechoslovakia An amended description of Micrococcus luteus (Schroeter 1872) Cohn 1872, at present a broad-based species characterized primarily on negative charact er- istics, is proposed on the basis of a taxonomic analysis of 30 strains. CCM 169 (= ATCC 4698) is designated a's the neotype strain of M. luteus. A large number of species of aerobic, diameter and arranged in tetrads and in catalase-positive, yellow-pigmented micrococci irregular clumps of tetrads. Strains CCM 248, have been described, but their incomplete 337, 1674, and 2494 formed packets and characterization has hindered their classifica- irregular clusters of packets. These strains also tion. Some of them are known as Micrococcus produced the largest cells (1.5 to 1.8 pm) of all luteus, M. flaws, M. lysodeikticus, Sarcina of those studied. None of the strains was motile lutea, and S. flava. At present only two of these or produced spores. are generally accepted: M. luteus and M. varians Cultural characteristics. Colonies of all of the (13, 21). strains were circular, convex, and smooth, with Although M. luteus is the type species of the either a glistening or a dull surface. Tetrad- and genus Micrococcus, it is not sufficiently de- packet-forming strains produced matted colo- fined. -
Lysozyme Enhances the Bactericidal Effect of BP100 Peptide Against Erwinia Amylovora, the Causal Agent of Fire Blight of Rosaceo
Cabrefiga and Montesinos BMC Microbiology (2017) 17:39 DOI 10.1186/s12866-017-0957-y RESEARCH ARTICLE Open Access Lysozyme enhances the bactericidal effect of BP100 peptide against Erwinia amylovora, the causal agent of fire blight of rosaceous plants Jordi Cabrefiga and Emilio Montesinos* Abstract Background: Fire blight is an important disease affecting rosaceous plants. The causal agent is the bacteria Erwinia amylovora which is poorly controlled with the use of conventional bactericides and biopesticides. Antimicrobial peptides (AMPs) have been proposed as a new compounds suitable for plant disease control. BP100, a synthetic linear undecapeptide (KKLFKKILKYL-NH2), has been reported to be effective against E. amylovora infections. Moreover, BP100 showed bacteriolytic activity, moderate susceptibility to protease degradation and low toxicity. However, the peptide concentration required for an effective control of infections in planta is too high due to some inactivation by tissue components. This is a limitation beause of the high cost of synthesis of this compound. We expected that the combination of BP100 with lysozyme may produce a synergistic effect, enhancing its activity and reducing the effective concentration needed for fire blight control. Results: The combination of a synhetic multifunctional undecapeptide (BP100) with lysozyme produces a synergistic effect. We showed a significant increase of the antimicrobial activity against E. amylovora that was associated to the increase of cell membrane damage and to the reduction of cell metabolism. Combination of BP100 with lysozyme reduced the time required to achieve cell death and the minimal inhibitory concentration (MIC), and increased the activity of BP100 in the presence of leaf extracts even when the peptide was applied at low doses. -
A Comprehensive Database of Antimicrobial Peptides of Dairy Origin Jérémie Théolier, Ismail Fliss, Julie Jean, Riadh Hammami
MilkAMP: a comprehensive database of antimicrobial peptides of dairy origin Jérémie Théolier, Ismail Fliss, Julie Jean, Riadh Hammami To cite this version: Jérémie Théolier, Ismail Fliss, Julie Jean, Riadh Hammami. MilkAMP: a comprehensive database of antimicrobial peptides of dairy origin. Dairy Science & Technology, EDP sciences/Springer, 2014, 94 (2), pp.181-193. 10.1007/s13594-013-0153-2. hal-01234856 HAL Id: hal-01234856 https://hal.archives-ouvertes.fr/hal-01234856 Submitted on 27 Nov 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Dairy Sci. & Technol. (2014) 94:181–193 DOI 10.1007/s13594-013-0153-2 ORIGINAL PAPER MilkAMP: a comprehensive database of antimicrobial peptides of dairy origin Jérémie Théolier & Ismail Fliss & Julie Jean & Riadh Hammami Received: 16 May 2013 /Revised: 9 October 2013 /Accepted: 11 October 2013 / Published online: 6 November 2013 # INRA and Springer-Verlag France 2013 Abstract The number of identified and characterized bioactive peptides derived from milk proteins is increasing. Although many antimicrobial peptides of dairy origin are now well known, important structural and functional information is still missing or unavailable to potential users. The compilation of such information in one centralized resource such as a database would facilitate the study of the potential of these peptides as natural alternatives for food preservation or to help thwart antibiotic resistance in pathogenic bacteria. -
Micrococcus Luteus - Survival in Amber C.L
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@CalPoly Micrococcus luteus - Survival in Amber C.L. Greenblatt , J. Baum , B.Y. Klein , S. Nachshon , V. Koltunov and R.J. Cano Abstract Introduction A growing body of evidence now supports the isolation of There is an accumulating body of data reporting the microorganisms from ancient materials. However, ques persistence of bacteria in what are considered extreme and tions about the stringency of extraction methods and the oligotrophic environments [15, 24, 37]. However, the genetic relatedness of isolated organisms to their closest mechanisms used by these bacteria to survive in such living relatives continue to challenge the authenticity of conditions are poorly understood. One extreme niche that these ancient life forms. Previous studies have success has consistently yielded such bacteria is amber, from fully isolated a number of spore-forming bacteria from which single isolates and assemblages of multiple bacterial organic and inorganic deposits of considerable age whose species have been characterized [3, 8, 10, 17]. Amber is the survival is explained by their ability to enter suspended fossilized remains of organic tree resins. As volatile terp animation for extended periods of time. However, de enoids in these resins evaporate and dissipate under nat spite a number of putative reports, the isolation of non ural forest conditions they leave the nonvolatile fractions spore-forming bacteria and an explanation for their to become fossilized through progressive oxidation and survival have remained enigmatic. Here we describe the polymerization. During the early stages of solidification isolation of non-spore-forming cocci from a 120-million microorganisms, and occasionally larger organisms such year-old block of amber, which by genetic, morphologi as insects [3], can become entrapped in the resins [31]. -
Activity by Specific Inhibition of Myeloperoxidase Hlf1-11 Exerts Immunomodulatory Effects the Human Lactoferrin-Derived Peptide
The Human Lactoferrin-Derived Peptide hLF1-11 Exerts Immunomodulatory Effects by Specific Inhibition of Myeloperoxidase Activity This information is current as of September 25, 2021. Anne M. van der Does, Paul J. Hensbergen, Sylvia J. Bogaards, Medine Cansoy, André M. Deelder, Hans C. van Leeuwen, Jan W. Drijfhout, Jaap T. van Dissel and Peter H. Nibbering J Immunol 2012; 188:5012-5019; Prepublished online 20 Downloaded from April 2012; doi: 10.4049/jimmunol.1102777 http://www.jimmunol.org/content/188/10/5012 http://www.jimmunol.org/ References This article cites 39 articles, 13 of which you can access for free at: http://www.jimmunol.org/content/188/10/5012.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2012 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology The Human Lactoferrin-Derived Peptide hLF1-11 Exerts Immunomodulatory Effects by Specific Inhibition of Myeloperoxidase Activity Anne M. -
Vitamin D-Cathelicidin Axis: at the Crossroads Between Protective Immunity and Pathological Inflammation During Infection
Immune Netw. 2020 Apr;20(2):e12 https://doi.org/10.4110/in.2020.20.e12 pISSN 1598-2629·eISSN 2092-6685 Review Article Vitamin D-Cathelicidin Axis: at the Crossroads between Protective Immunity and Pathological Inflammation during Infection Chaeuk Chung 1, Prashanta Silwal 2,3, Insoo Kim2,3, Robert L. Modlin 4,5, Eun-Kyeong Jo 2,3,6,* 1Division of Pulmonary and Critical Care, Department of Internal Medicine, Chungnam National University School of Medicine, Daejeon 35015, Korea Received: Oct 27, 2019 2Infection Control Convergence Research Center, Chungnam National University School of Medicine, Revised: Jan 28, 2020 Daejeon 35015, Korea Accepted: Jan 30, 2020 3Department of Microbiology, Chungnam National University School of Medicine, Daejeon 35015, Korea 4Division of Dermatology, Department of Medicine, David Geffen School of Medicine at the University of *Correspondence to California, Los Angeles, Los Angeles, CA 90095, USA Eun-Kyeong Jo 5Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Department of Microbiology, Chungnam Los Angeles, CA 90095, USA National University School of Medicine, 282 6Department of Medical Science, Chungnam National University School of Medicine, Daejeon 35015, Korea Munhwa-ro, Jung-gu, Daejeon 35015, Korea. E-mail: [email protected] Copyright © 2020. The Korean Association of ABSTRACT Immunologists This is an Open Access article distributed Vitamin D signaling plays an essential role in innate defense against intracellular under the terms of the Creative Commons microorganisms via the generation of the antimicrobial protein cathelicidin. In addition Attribution Non-Commercial License (https:// to directly binding to and killing a range of pathogens, cathelicidin acts as a secondary creativecommons.org/licenses/by-nc/4.0/) messenger driving vitamin D-mediated inflammation during infection.