Glucuronidation of 6 Alpha-Hydroxy Bile Acids by Human Liver Microsomes
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Review: Microbial Transformations of Human Bile Acids Douglas V
Guzior and Quinn Microbiome (2021) 9:140 https://doi.org/10.1186/s40168-021-01101-1 REVIEW Open Access Review: microbial transformations of human bile acids Douglas V. Guzior1,2 and Robert A. Quinn2* Abstract Bile acids play key roles in gut metabolism, cell signaling, and microbiome composition. While the liver is responsible for the production of primary bile acids, microbes in the gut modify these compounds into myriad forms that greatly increase their diversity and biological function. Since the early 1960s, microbes have been known to transform human bile acids in four distinct ways: deconjugation of the amino acids glycine or taurine, and dehydroxylation, dehydrogenation, and epimerization of the cholesterol core. Alterations in the chemistry of these secondary bile acids have been linked to several diseases, such as cirrhosis, inflammatory bowel disease, and cancer. In addition to the previously known transformations, a recent study has shown that members of our gut microbiota are also able to conjugate amino acids to bile acids, representing a new set of “microbially conjugated bile acids.” This new finding greatly influences the diversity of bile acids in the mammalian gut, but the effects on host physiology and microbial dynamics are mostly unknown. This review focuses on recent discoveries investigating microbial mechanisms of human bile acids and explores the chemical diversity that may exist in bile acid structures in light of the new discovery of microbial conjugations. Keywords: Bile acid, Cholic acid, Conjugation, Microbiome, Metabolism, Microbiology, Gut health, Clostridium scindens, Enterocloster bolteae Introduction the development of healthy or diseased states. For The history of bile example, abnormally high levels of the microbially modi- Bile has been implicated in human health for millennia. -
Bile Acid Recognition by NAPE-PLD
Articles pubs.acs.org/acschemicalbiology Bile Acid Recognition by NAPE-PLD † ‡ ‡ # † ‡ Eleonora Margheritis, Beatrice Castellani, Paola Magotti, , Sara Peruzzi, Elisa Romeo, § ∥ ∥ ‡ ⊥ † ‡ Francesca Natali, Serena Mostarda, Antimo Gioiello, Daniele Piomelli, , and Gianpiero Garau*, , † Center for Nanotechnology Innovation@NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, 56127 Pisa, Italy ‡ Department of Drug Discovery-Validation, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy § Institute Laue-Langevin (ILL) and CNR-IOM, 71 avenue des Martyrs, 38042 Grenoble, France ∥ Department of Pharmaceutical Sciences, University of Perugia, Via del Liceo 1, 06125 Perugia, Italy ⊥ Department of Anatomy & Neurobiology, University of California - Irvine, Gillespie NRF 3101, Irvine, California 92697, United States ABSTRACT: The membrane-associated enzyme NAPE-PLD (N- acyl phosphatidylethanolamine specific-phospholipase D) gener- ates the endogenous cannabinoid arachidonylethanolamide and other lipid signaling amides, including oleoylethanolamide and palmitoylethanolamide. These bioactive molecules play important roles in several physiological pathways including stress and pain response, appetite, and lifespan. Recently, we reported the crystal structure of human NAPE-PLD and discovered specific binding sites for the bile acid deoxycholic acid. In this study, we demonstrate that in the presence of this secondary bile acid, the stiffness of the protein measured by elastic neutron scattering increases, and NAPE-PLD is ∼7 times faster to catalyze the hydrolysis of the more unsaturated substrate N-arachidonyl-phosphatidylethanolamine, compared with N-palmitoyl- phosphatidylethanolamine. Chenodeoxycholic acid and glyco- or tauro-dihydroxy conjugates can also bind to NAPE-PLD and drive its activation. The only natural monohydroxy bile acid, lithocholic acid, shows an affinity of ∼20 μM and acts instead as a ≈ μ fi reversible inhibitor (IC50 68 M). -
The Analysis of Bile Acids: Enhancement of Specificity Using an Ion Mobility-Tofms Based Approach
THE ANALYSIS OF BILE ACIDS: ENHANCEMENT OF SPECIFICITY USING AN ION MOBILITY-TOFMS BASED APPROACH Jonathan P Williams1, Martin Palmer1, Jonas Abdel-Khalik2, Yuqin Wang2, Sarah M Stow3, Mark Towers1, Giuseppe Astarita1, James Langridge1 and William J Griffiths2 1 2 3 Waters Corporation, Wilmslow, Manchester UK; College of Medicine, Swansea University UK; Laboratory for Structural Mass Spectrometry, Vanderbilt University, TN, USA Fig.1 shows a schematic of Vion. In brief, the instrument com- MALDI Imaging Ion Mobility MS measurements of the 100 Representative conformations from distance geometry INTRODUCTION prises an IM separation device, a quadrupole and segmented RESULTS isomeric bile acids deoxycholic acid and hyodeoxy-cholic modeling for the bile acids investigated collision cell prior to the TOFMS. Ions are accumulated in the acid DCA 'Steroidomics' is the qualitative and quantitative trap travelling-wave (T-Wave) and periodically released into New and improved methods were sought for the identification, HA quantification, and characterization of bile acids, oxysterols, and other the T-Wave IM where they separate according to their mobil- % study of steroid-type molecules found within the sterols and steroids. The involvement of these molecules in metabolome. Bile acids for example, are ity. neurogenesis and immunity is investigated. classified as acidic sterols that are synthesised The use of IM as an analytical tool to aid direct infusion ESI, DESI and mainly by the liver from cholesterol and aid MALDI shotgun steroidomic-type analysis was investigated. Bile acids 0 digestion and fat solubilisation. The presence of present themselves in biological type samples as complex mixtures. 2.00 2.50 3.00 3.50 4.00 4.50 5.00 multiple isomeric bile acids poses a great Structural information may be obtained using MS/MS but in the absence of a chromatographic step, unambiguous characterisation using MS/MS 100 challenge for steroidomic research. -
Bile Acids and Microbiota: Multifaceted and Versatile Regulators of the Liver–Gut Axis
International Journal of Molecular Sciences Review Bile Acids and Microbiota: Multifaceted and Versatile Regulators of the Liver–Gut Axis Niklas Grüner 1 and Jochen Mattner 1,2,* 1 Mikrobiologisches Institut-Klinische Mikrobiologie, Immunologie und Hygiene, Universitätsklinikum Erlangen and Friedrich-Alexander Universität (FAU) Erlangen-Nürnberg, 91054 Erlangen, Germany; [email protected] 2 Medical Immunology Campus Erlangen, FAU Erlangen-Nürnberg, 91054 Erlangen, Germany * Correspondence: [email protected]; Tel.: +49-9131-852-3640 Abstract: After their synthesis from cholesterol in hepatic tissues, bile acids (BAs) are secreted into the intestinal lumen. Most BAs are subsequently re-absorbed in the terminal ileum and are trans- ported back for recycling to the liver. Some of them, however, reach the colon and change their physicochemical properties upon modification by gut bacteria, and vice versa, BAs also shape the composition and function of the intestinal microbiota. This mutual interplay of both BAs and gut microbiota regulates many physiological processes, including the lipid, carbohydrate and energy metabolism of the host. Emerging evidence also implies an important role of this enterohepatic BA circuit in shaping mucosal colonization resistance as well as local and distant immune responses, tissue physiology and carcinogenesis. Subsequently, disrupted interactions of gut bacteria and BAs are associated with many disorders as diverse as Clostridioides difficile or Salmonella Typhimurium infection, inflammatory bowel disease, type 1 diabetes, asthma, metabolic syndrome, obesity, Parkin- son’s disease, schizophrenia and epilepsy. As we cannot address all of these interesting underlying pathophysiologic mechanisms here, we summarize the current knowledge about the physiologic and pathogenic interplay of local site microbiota and the enterohepatic BA metabolism using a few Citation: Grüner, N.; Mattner, J. -
Full-Text PDF (Final Published Version)
Alexander, S. P. H., Cidlowski, J. A., Kelly, E., Marrion, N. V., Peters, J. A., Faccenda, E., Harding, S. D., Pawson, A. J., Sharman, J. L., Southan, C., Davies, J. A., & CGTP Collaborators (2017). THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Nuclear hormone receptors. British Journal of Pharmacology, 174, S208-S224. https://doi.org/10.1111/bph.13880 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1111/bph.13880 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Wiley at https://doi.org/10.1111/bph.13880 . Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2017/18: Nuclear hormone receptors. British Journal of Pharmacology (2017) 174, S208–S224 THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Nuclear hormone receptors Stephen PH Alexander1, John A Cidlowski2, Eamonn Kelly3, Neil V Marrion3, John A Peters4, Elena Faccenda5, Simon D Harding5,AdamJPawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical -
Applications of Chemical Methodology in Environmental Science, Systems Biology, and Interdisciplinary Chemical Education
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 5-2019 Applications of Chemical Methodology in Environmental Science, Systems Biology, and Interdisciplinary Chemical Education Caleb Michael Gibson University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Gibson, Caleb Michael, "Applications of Chemical Methodology in Environmental Science, Systems Biology, and Interdisciplinary Chemical Education. " PhD diss., University of Tennessee, 2019. https://trace.tennessee.edu/utk_graddiss/5400 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Caleb Michael Gibson entitled "Applications of Chemical Methodology in Environmental Science, Systems Biology, and Interdisciplinary Chemical Education." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Chemistry. Shawn Campagna, Major Professor We have read this dissertation and recommend its acceptance: Elizabeth Fozo, MIchael Sepaniak, Ampofo Darko Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) APPLICATIONS OF CHEMICAL METHODOLOGY IN ENVIRONMENTAL SCIENCE, SYSTEMS BIOLOGY, AND INTERDISCIPLINARY CHEMICAL EDUCATION A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Caleb Michael Gibson May 2019 Copyright © 2019 by Caleb Michael Gibson All rights reserved. -
Elimination Processes of Guest Molecules from the Inclusion Compounds of Deoxycholic Acid῍
J. Mass Spectrom. Soc. Jpn. Vol. 51, No. 1, 2003 REGULAR PAPER Elimination Processes of Guest Molecules from the Inclusion Compounds of Deoxycholic Acid῍ Takayoshi K>BJG6,῏a) Yuichi K6H6>,a) Tomohide THJ?>BDID,a) Emi K6L6BJG6,a) Tadashi K6B>N6B6,a) and Hatsumi A@>b) (Received November 11, 2002; Accepted December 10, 2002) Thermal behaviors of the inclusion compounds of deoxycholic acid with methanol, ethanol, propane-1-ol, propane-2-ol, and butane-1-ol have been studied by TG-DTA-MS and DSC. Liberation processes of guest molecules from their inclusion compounds of methanol, ethanol were carried out in a single step. Those of propanols and butane-1-ol from the corresponding inclusion compounds proceed in complicated steps. The elimination temperatures, enthalpies and the activation enthalpies of eliminations have been determined by TG, DSC, and MS. 1. Introduction 2. Experimental Bile acids are synthesized from free cholesterol in the Deoxycholic acid (Sigma Chemical Co., Ltd.) was pur- liver and secreted into the small intestine via bile, ified by recrystallization using the purified acetone. All where they aggregate to form micelles in conjunction organic solvents (Kishida Chemical) used as guests with phospholipid or fatty acid. These mixed micelles were fractionally distilled over freshly activated molec- enable the solubilization of lipids and the absorption of ular sieves 4A.6) GLC results of purified solvents fat from the gastrointestinal tract. Also the bile acids showed no trace-impurity peak. Coulometric Karl- form various types of inclusion compounds with many Fischer’s method on a Moisturemeter (Mitsubishi Che- kinds of organic compounds.1) So those inclusion com- mical Ind., CA-02) gave the water content of each pounds might be performed ideal formulation. -
Biliary Bile Acid Composition of the Human Fetus in Early Gestation
0031-3998/87/2102-0197$02.00/0 PEDIATRIC RESEARCH Vol. 21, No.2, 1987 Copyright© 1987 International Pediatric Research Foundation, Inc. Printed in U.S.A. Biliary Bile Acid Composition of the Human Fetus in Early Gestation C. COLOMBO, G. ZULIANI, M. RONCHI, J. BREIDENSTEIN, AND K. D. R. SETCHELL Department q/Pediatrics and Obstetrics, University q/ Milan, Milan, Italy [C. C., G.Z., M.R.j and Department q/ Pediatric Gastroel1/erology and Nwrition, Children's Hospital Medical Center, Cincinnati, Ohio 45229 [J.B., K.D.R.S.j ABSTRACf. Using analytical techniques, which included the key processes of the enterohepatic circulation of bile acids capillary column gas-liquid chromatography and mass ( 16-19). As a result of physiologic cholestasis, the newborn infant spectrometry, detailed bile acid profiles were obtained for has a tendency to develop a true neonatal cholestasis when 24 fetal bile samples collected after legal abortions were subjected to such stresses as sepsis, hypoxia, and total parenteral performed between the 14th and 20th wk of gestation. nutrition ( 15). Qualitatively, the bile acid profiles of all fetal bile samples Abnormalities in bile acid metabolism have been suggested to were similar. The predominant bile acids identified were be a factor in the development of certain forms of cholestasis in chenodeoxycholic and cholic acid. The presence of small the newborn (20) and in animal models the hepatotoxic nature but variable amounts of deoxycholic acid and traces of of bile acids has been well established (21-24). A greater under lithocholic acid suggested placental transfer of these bile standing of the etiology of these conditions requires a better acids from the maternal circulation. -
Vitamin D Receptor Promotes Healthy Microbial Metabolites
www.nature.com/scientificreports OPEN Vitamin D receptor promotes healthy microbial metabolites and microbiome Ishita Chatterjee1, Rong Lu1, Yongguo Zhang1, Jilei Zhang1, Yang Dai 2, Yinglin Xia1 ✉ & Jun Sun 1 ✉ Microbiota derived metabolites act as chemical messengers that elicit a profound impact on host physiology. Vitamin D receptor (VDR) is a key genetic factor for shaping the host microbiome. However, it remains unclear how microbial metabolites are altered in the absence of VDR. We investigated metabolites from mice with tissue-specifc deletion of VDR in intestinal epithelial cells or myeloid cells. Conditional VDR deletion severely changed metabolites specifcally produced from carbohydrate, protein, lipid, and bile acid metabolism. Eighty-four out of 765 biochemicals were signifcantly altered due to the Vdr status, and 530 signifcant changes were due to the high-fat diet intervention. The impact of diet was more prominent due to loss of VDR as indicated by the diferences in metabolites generated from energy expenditure, tri-carboxylic acid cycle, tocopherol, polyamine metabolism, and bile acids. The efect of HFD was more pronounced in female mice after VDR deletion. Interestingly, the expression levels of farnesoid X receptor in liver and intestine were signifcantly increased after intestinal epithelial VDR deletion and were further increased by the high-fat diet. Our study highlights the gender diferences, tissue specifcity, and potential gut-liver-microbiome axis mediated by VDR that might trigger downstream metabolic disorders. Metabolites are the language between microbiome and host1. To understand how host factors modulate the microbiome and consequently alter molecular and physiological processes, we need to understand the metabo- lome — the collection of interacting metabolites from the microbiome and host. -
KYBELLA® Safely and Effectively
HIGHLIGHTS OF PRESCRIBING INFORMATION ----------------------DOSAGE FORMS AND STRENGTHS------------------- These highlights do not include all the information needed to use KYBELLA® safely and effectively. See full prescribing information for • Injection: 10 mg/mL sterile solution, supplied in 2 mL vials. Each vial KYBELLA®. is for single patient use. (3) • Dilution or admixture with other compounds is not recommended. (3) KYBELLA® (deoxycholic acid) injection, for subcutaneous use Initial U.S. Approval: 2015 -----------------------------CONTRAINDICATIONS----------------------------- ® ___________________________ _____________________________ KYBELLA is contraindicated in the presence of infection at the injection RECENT MAJOR CHANGES sites. (4) Warning and Precautions (5.5, 5.6) 01/2018 ----------------------WARNINGS AND PRECAUTIONS----------------------- --------------------------INDICATIONS AND USAGE--------------------------- • Marginal mandibular nerve (MMN) injury: Follow injection technique KYBELLA® is a cytolytic drug indicated for improvement in the appearance to avoid this injury. (2.3, 5.1) of moderate to severe convexity or fullness associated with submental fat in • Dysphagia may occur with KYBELLA® use. Use in patients with pre adults. (1.1) existing dysphagia may exacerbate the condition. (5.2) • ® ® Submental hematoma/bruising occurs frequently after KYBELLA Limitation of use: The safe and effective use of KYBELLA for the administration. Use with caution in patients who are being treated with treatment of subcutaneous fat outside the submental region has not been antiplatelet or anticoagulant therapy or have coagulation abnormalities. established and is not recommended. (1.2) (5.3) ----------------------DOSAGE AND ADMINISTRATION---------------------- • Avoid injecting in proximity to vulnerable anatomic structures due to the increased risk of tissue damage. (2.3, 5.4) • 0.2 mL injections spaced 1 cm apart until all sites in the planned • Injection site alopecia: Withhold subsequent treatments until resolution. -
Download Product Insert (PDF)
PRODUCT INFORMATION Deoxycholic Acid Item No. 20756 O CAS Registry No.: 83-44-3 OH Formal Name: (3α,5β,12α)-3,12-dihydroxy-cholan-24-oic acid H OH Synonyms: Cholanoic Acid, DCA, NSC 8797 H MF: C24H40O4 FW: 392.6 H H Purity: ≥95% Supplied as: A crystalline solid OH Storage: -20°C H Stability: ≥2 years Information represents the product specifications. Batch specific analytical results are provided on each certificate of analysis. Laboratory Procedures Deoxycholic acid (DCA) is supplied as a crystalline solid. A stock solution may be made by dissolving the DCA in the solvent of choice, which should be purged with an inert gas. DCA is soluble in organic solvents such as ethanol, DMSO, and dimethyl formamide (DMF). The solubility of DCA in ethanol and DMSO is approximately 20 mg/ml and approximately 30 mg/ml in DMF. DCA is sparingly soluble in aqueous buffers. For maximum solubility in aqueous buffers, DCA should first be dissolved in DMF and then diluted with the aqueous buffer of choice. DCA has a solubility of approximately 0.5 mg/ml in a 1:1 solution of DMF:PBS (pH 7.2) using this method. We do not recommend storing the aqueous solution for more than one day. Description DCA is a secondary bile acid that is formed via microbial transformation of cholic acid (Item No. 20250) in the colon.1 It can be conjugated to glycine or taurine (Item No. 27031) to produce glycodeoxycholic acid (GDCA; Item No. 20274) or taurodeoxycholic acid (TDCA; Item No. 15935), respectively, in hepatocytes.1-3 DCA (0.2% v/v) inhibits spore germination induced by taurocholic acid (TCA; Item No. -
Peroxisome Proliferator-Activated Receptor Induces Hepatic
THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 278, No. 35, Issue of August 29, pp. 32852–32860, 2003 © 2003 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Peroxisome Proliferator-activated Receptor ␣ Induces Hepatic Expression of the Human Bile Acid Glucuronidating UDP-glucuronosyltransferase 2B4 Enzyme* Received for publication, May 22, 2003 Published, JBC Papers in Press, June 16, 2003, DOI 10.1074/jbc.M305361200 Olivier Barbier‡, Daniel Duran-Sandoval‡, Ine´s Pineda-Torra‡, Vladimir Kosykh§, Jean-Charles Fruchart‡, and Bart Staels‡¶ From the ‡Unite´de Recherche 545, Institut National de la Sante´et de la Recherche Me´dicale (INSERM), De´partement d’Athe´roscle´rose, Institut Pasteur de Lille and the Faculte´de Pharmacie, Universite´de Lille II, 59019 Lille, France and §Institute of Experimental Cardiology, Russian Cardiology Complex, Moscow 121552, Russia Glucuronidation, a major metabolic pathway for a pollutants (1). This reaction consists in the transfer of the large variety of endobiotics and xenobiotics, is cata- glucuronosyl group from UDP-glucuronic acid to the acceptor lyzed by enzymes belonging to the UDP-glucuronosyl- molecule (1). The addition of the glucuronosyl group on a com- transferase (UGT) family. Among UGT enzymes, pound results in a more water-soluble molecule, which can be UGT2B4 conjugates a large variety of endogenous and excreted into bile or urine. Glucuronidation is catalyzed by Downloaded from exogenous molecules and is considered to be the major enzymes belonging to the UDP-glucuronosyltransferase (UGT) bile acid conjugating UGT enzyme in human liver. In the family, and based on primary structure homology, UGT pro- present study, we identify UGT2B4 as a novel target teins have been divided into two major subfamilies, UGT1A gene of the nuclear receptor peroxisome proliferator- and UGT2B (2).