Sex-Determination Systems and Their Evolution: Mammals
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Amphibian Sex Determination and Sex Reversal
CMLS, Cell. Mol. Life Sci. 55 (1999) 901–909 1420-682X/99/070901-09 $ 1.50+0.20/0 © Birkha¨user Verlag, Basel, 1999 Amphibian sex determination and sex reversal H. Wallace*, G. M. I. Badawy and B. M. N. Wallace School of Biological Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT (UK), Fax +44 121 414 5925, e-mail: [email protected] Abstract. Amphibians employ a genetic mechanism of published studies on crested newts. These newts re- sex determination, according to all available informa- spond conventionally to temperature and hormone tion on sex chromosomes or breeding tests. Sex reversal treatment but provide anomalous results from breeding allows breeding tests to establish which sex is het- tests. It is suggested that both the evolution from tem- erogametic and provides an indication of the mecha- perature dependency to a genetic switch and from ZZ/ nism of sex determination. Cases of spontaneous and ZW to XX/XY are superimposed on a generally experimental sex reversal (by temperature, hormones or uniform mechanism of sex determination in all verte- surgery) are reviewed and illustrated by previously un- brates. Key words. Sex determination; sex reversal; temperature dependence; sex hormone; amphibia; Triturus cristatus. Genetic sex determination insight into its mechanism, by showing how it can be overridden by environmental or hormonal influences. All amphibians that have been tested possess a genetic Third, using irradiated sperm to activate eggs which are mechanism of sex determination. Examples of male then heat-shocked to arrest the second meiotic division heterogamety (XX/XY) or female heterogamety (ZZ/ and thus restore diploidy, which is equivalent to self-fer- ZW) have been found repeatedly in both anurans and tilization of a female or breeding from a neomale (fig. -
History of the Research on Sex Determination
Review Article ISSN: 2574 -1241 DOI: 10.26717/BJSTR.2020.25.004194 History of The Research on Sex Determination Jacek Z Kubiak1,2, Malgorzata Kloc3-5 and Rafal P Piprek6* 1UnivRennes, CNRS, UMR 6290, IGDR, Cell Cycle Group, F-35000 Rennes, France 2Military Institute of Hygiene and Epidemiology, ZMRiBK, Warsaw, Poland 3The Houston Methodist Research Institute, USA 4Department of Surgery, The Houston Methodist Hospital, USA 5University of Texas, MD Anderson Cancer Center, USA 6Department of Comparative Anatomy, Institute of Zoology and Biomedical Research, Jagiellonian University, Poland *Corresponding author: Rafał P Piprek, Department of Comparative Anatomy, Institute of Zoology and Biomedical Research, Jagiellonian University, Poland ARTICLE INFO Abstract Received: Published: January 28, 2020 Since the beginning of the humanity, people were fascinated by sex and intrigued by February 06, 2020 how the differences between sexes are determined. Ancient philosophers and middle Citation: age scholars proposed numerous fantastic explanations for the origin of sex differences in people and animals. However, only the development of the modern scientific methods Jacek Z Kubiak, Malgorzata Kloc, allowed us to find, on the scientific ground, the right answers to these questions. In this Rafal P Piprek. History of The Research on review article, we describe the history of these discoveries, and which major discoveries allowed the understanding of the origin of sex and molecular and cellular basis of the Sex Determination. Biomed J Sci & Tech Res -
An Overview of the Independent Histories of the Human Y Chromosome and the Human Mitochondrial Chromosome
The Proceedings of the International Conference on Creationism Volume 8 Print Reference: Pages 133-151 Article 7 2018 An Overview of the Independent Histories of the Human Y Chromosome and the Human Mitochondrial chromosome Robert W. Carter Stephen Lee University of Idaho John C. Sanford Cornell University, Cornell University College of Agriculture and Life Sciences School of Integrative Plant Science,Follow this Plant and Biology additional Section works at: https://digitalcommons.cedarville.edu/icc_proceedings DigitalCommons@Cedarville provides a publication platform for fully open access journals, which means that all articles are available on the Internet to all users immediately upon publication. However, the opinions and sentiments expressed by the authors of articles published in our journals do not necessarily indicate the endorsement or reflect the views of DigitalCommons@Cedarville, the Centennial Library, or Cedarville University and its employees. The authors are solely responsible for the content of their work. Please address questions to [email protected]. Browse the contents of this volume of The Proceedings of the International Conference on Creationism. Recommended Citation Carter, R.W., S.S. Lee, and J.C. Sanford. An overview of the independent histories of the human Y- chromosome and the human mitochondrial chromosome. 2018. In Proceedings of the Eighth International Conference on Creationism, ed. J.H. Whitmore, pp. 133–151. Pittsburgh, Pennsylvania: Creation Science Fellowship. Carter, R.W., S.S. Lee, and J.C. Sanford. An overview of the independent histories of the human Y-chromosome and the human mitochondrial chromosome. 2018. In Proceedings of the Eighth International Conference on Creationism, ed. J.H. -
Protein Interactions in the Cancer Proteome† Cite This: Mol
Molecular BioSystems View Article Online PAPER View Journal | View Issue Small-molecule binding sites to explore protein– protein interactions in the cancer proteome† Cite this: Mol. BioSyst., 2016, 12,3067 David Xu,ab Shadia I. Jalal,c George W. Sledge Jr.d and Samy O. Meroueh*aef The Cancer Genome Atlas (TCGA) offers an unprecedented opportunity to identify small-molecule binding sites on proteins with overexpressed mRNA levels that correlate with poor survival. Here, we analyze RNA-seq and clinical data for 10 tumor types to identify genes that are both overexpressed and correlate with patient survival. Protein products of these genes were scanned for binding sites that possess shape and physicochemical properties that can accommodate small-molecule probes or therapeutic agents (druggable). These binding sites were classified as enzyme active sites (ENZ), protein–protein interaction sites (PPI), or other sites whose function is unknown (OTH). Interestingly, the overwhelming majority of binding sites were classified as OTH. We find that ENZ, PPI, and OTH binding sites often occurred on the same structure suggesting that many of these OTH cavities can be used for allosteric modulation of Creative Commons Attribution 3.0 Unported Licence. enzyme activity or protein–protein interactions with small molecules. We discovered several ENZ (PYCR1, QPRT,andHSPA6)andPPI(CASC5, ZBTB32,andCSAD) binding sites on proteins that have been seldom explored in cancer. We also found proteins that have been extensively studied in cancer that have not been previously explored with small molecules that harbor ENZ (PKMYT1, STEAP3,andNNMT) and PPI (HNF4A, MEF2B,andCBX2) binding sites. All binding sites were classified by the signaling pathways to Received 29th March 2016, which the protein that harbors them belongs using KEGG. -
Mouse Cbx2 Knockout Project (CRISPR/Cas9)
https://www.alphaknockout.com Mouse Cbx2 Knockout Project (CRISPR/Cas9) Objective: To create a Cbx2 knockout Mouse model (C57BL/6J) by CRISPR/Cas-mediated genome engineering. Strategy summary: The Cbx2 gene (NCBI Reference Sequence: NM_007623 ; Ensembl: ENSMUSG00000025577 ) is located on Mouse chromosome 11. 5 exons are identified, with the ATG start codon in exon 1 and the TGA stop codon in exon 5 (Transcript: ENSMUST00000026662). Exon 4 will be selected as target site. Cas9 and gRNA will be co-injected into fertilized eggs for KO Mouse production. The pups will be genotyped by PCR followed by sequencing analysis. Note: Mutations cause malformations of the axial skeletal, reduced viability, poor growth and male to female sex reversal. Exon 4 starts from about 11.75% of the coding region. Exon 4 covers 6.81% of the coding region. The size of effective KO region: ~106 bp. The KO region does not have any other known gene. Page 1 of 8 https://www.alphaknockout.com Overview of the Targeting Strategy Wildtype allele gRNA region 5' gRNA region 3' 1 4 5 Legends Exon of mouse Cbx2 Knockout region Page 2 of 8 https://www.alphaknockout.com Overview of the Dot Plot (up) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 2000 bp section upstream of Exon 4 is aligned with itself to determine if there are tandem repeats. No significant tandem repeat is found in the dot plot matrix. So this region is suitable for PCR screening or sequencing analysis. Overview of the Dot Plot (down) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 1343 bp section downstream of Exon 4 is aligned with itself to determine if there are tandem repeats. -
Protein Quality Control in the Nucleolus Safeguards Recovery of Epigenetic
RESEARCH ARTICLE Protein quality control in the nucleolus safeguards recovery of epigenetic regulators after heat shock Maria Azkanaz1, Aida Rodrı´guezLo´ pez1, Bauke de Boer1, Wouter Huiting2, Pierre-Olivier Angrand3, Edo Vellenga1, Harm H Kampinga2, Steven Bergink2, Joost HA Martens4, Jan Jacob Schuringa1†, Vincent van den Boom1†* 1Department of Experimental Hematology, Cancer Research Center Groningen, University Medical Center Groningen, University of Groningen, Groningen, Netherlands; 2Department of Biomedical Sciences of Cells and Systems, University Medical Center Groningen, University of Groningen, Groningen, Netherlands; 3Cell Plasticity & Cancer, Inserm U908, University of Lille, Lille, France; 4Department of Molecular Biology, Faculty of Science and Medicine, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, Netherlands Abstract Maintenance of epigenetic modifiers is of utmost importance to preserve the epigenome and consequently appropriate cellular functioning. Here, we analyzed Polycomb group protein (PcG) complex integrity in response to heat shock (HS). Upon HS, various Polycomb Repressive Complex (PRC)1 and PRC2 subunits, including CBX proteins, but also other chromatin regulators, are found to accumulate in the nucleolus. In parallel, binding of PRC1/2 to target genes is strongly reduced, coinciding with a dramatic loss of H2AK119ub and H3K27me3 marks. Nucleolar-accumulated CBX proteins are immobile, but remarkably both CBX protein accumulation and loss of PRC1/2 epigenetic marks are reversible. This post-heat shock recovery of pan-nuclear CBX protein localization and reinstallation of epigenetic marks is HSP70 dependent. Our findings *For correspondence: demonstrate that the nucleolus is an essential protein quality control center, which is indispensable [email protected] for recovery of epigenetic regulators and maintenance of the epigenome after heat shock. -
Multiple Congenital Genitourinary Anomalies in a Polled Goat
Multiple Congenital Genitourinary Anomalies in a Polled Goat WILLIAM W. KING, DVM, PHD, DIPLOMATE, ACLAM,1,2* MELVIN E. YOUNG,1 AND M. EUGENE FOX, DVM3 A 1-day-old, Toggenburg/Nubian crossbred goat of polled parentage was referred for necropsy because of a large (diameter, 5 cm) bladder-like mass protruding from the perineal midline and difficult urination. Differential diagnoses included cutaneous cyst, ectopic urinary bladder, and urethral diverticulum/dilatation. Several genitourinary aberrations were noted. A second, smaller (diameter, 1 cm), more distal cystic structure was adjacent to an ambiguous prepuce. Testicles were discovered within a con- stricted, subcutaneous space near the inguinal canals. A rudimentary penis was located dorsal to the penile urethra with no appreciable urethral process. A tiny external urethral orifice was discerned only after liquid was injected into the lumen of the cystic structures, confirming their identity as urethral dilatations. The dilatations were separated by a constricting band of fibrous tissue. No other significant findings were detected. This case illustrates a combination of congenital anomalies including bilateral cryptorchidism with scrotal absence, segmental urethral hypoplasia, and urethral dilatation, most likely associated with the intersex condition seen in polled breeds. The continued production and use of small ruminants as animal models demands the prompt recognition of congenital anomalies. This case also exemplifies the precautions required when breeding goats with polled ancestry. The domestic goat (Capra hircus) has historically served and Nubian/Toggenburg sire. The owner reported that the doe had continues to play an important role in biomedical research (1). completed a normal gestation period on a diet of natural grass/ Many small breeds are available, facilitating common labora- alfalfa hay and water. -
Chromosomal Localisation of a Y Specific Growth Gene(S) J Med Genet: First Published As 10.1136/Jmg.32.7.572 on 1 July 1995
5727 JMed Genet 1995;32:572-575 Chromosomal localisation of a Y specific growth gene(s) J Med Genet: first published as 10.1136/jmg.32.7.572 on 1 July 1995. Downloaded from Tsutomu Ogata, Keiko Tomita, Akiko Hida, Nobutake Matsuo, Yutaka Nakahori, Yasuo Nakagome Abstract apparently large Yq terminal deletions are in- Although a Y specific growth gene(s) has variably sterile and occasionally have short been postulated in the Yqll region, the stature.24 However, since correlations between precise location has not been determined. genotype and stature have not been properly To localise the growth gene(s), we cor- examined, the precise location ofthe Y specific related genotype with stature in 13 Jap- growth gene(s) has not been determined. anese and four European non-mosaic In this paper, we attempt to localise the Y adult male patients with a partial Yq de- specific growth gene(s) on the basis of geno- letion. Fourteen patients preserving the type-phenotype correlations in patients with region between DYSll and DYS246 did Yq - chromosomes. not have short stature (11 Japanese, 165-180 cm; three Europeans, 165-173 cm) whereas the remaining three patients with Methods SELECTION OF PATIENTS the region deleted had short stature (two The patients analysed in the present study were Japanese, both 159 cm; one European, collected from a large series ofinfertile Japanese 157 cm). The results suggest that the region males ascertained from 1988 to 1993. The defined by DYS1I at interval 5C and by selection criteria used were: (1) measurement DYS246 at interval SD may be the critical of height between 20 and 50 years of age; region for the Y specific growth gene(s). -
Genome Editing Reveals Dmrt1 As an Essential Male Sex-Determining
www.nature.com/scientificreports OPEN Genome editing reveals dmrt1 as an essential male sex-determining gene in Chinese tongue sole Received: 13 October 2016 Accepted: 06 January 2017 (Cynoglossus semilaevis) Published: 16 February 2017 Zhongkai Cui1,2,3,*, Yun Liu4,5,*, Wenwen Wang1, Qian Wang1, Ning Zhang1, Fan Lin1, Na Wang1,2, Changwei Shao1,2, Zhongdian Dong1, Yangzhen Li1,2, Yingming Yang1, Mengzhu Hu1, Hailong Li1, Fengtao Gao1, Zhanfei Wei1, Liang Meng1, Yang Liu1,2, Min Wei1,2, Ying Zhu1,2, Hua Guo1,2, Christopher H. K. Cheng4,5,†, Manfred Schartl6,7,† & Songlin Chen1,2,† Chinese tongue sole is a marine fish with ZW sex determination. Genome sequencing suggested that the Z-linked dmrt1 is a putative male determination gene, but direct genetic evidence is still lacking. Here we show that TALEN of dmrt1 efficiently induced mutations of this gene. The ZZdmrt1 mutant fish developed ovary-like testis, and the spermatogenesis was disrupted. The female-related genes foxl2 and cyp19a1a were significantly increased in the gonad of the ZZdmrt1 mutant. Conversely, the male-related genes Sox9a and Amh were significantly decreased. Thedmrt1 deficient ZZ fish grew much faster than ZZ male control. Notably, we obtained an intersex ZW fish with a testis on one side and an ovary on the other side. This fish was chimeric for admrt1 mutation in the ovary, and wild-type dmrt1 in the testis. Our data provide the first functional evidence thatdmrt1 is a male determining gene in tongue sole. Sex-determining (SD) genes are located on the sex chromosomes to initiate a series of signaling pathways of sex related events to induce the development of bipotential primordial gonads into testes or ovaries. -
Y Chromosome in the Male Drosophila'
THE EFFECT OF TEMPERATURE ON MEIOTIC LOSS OF THE Y CHROMOSOME IN THE MALE DROSOPHILA' S. ZIMMERING Department of Biology, Brown University, Prouidence, Rhode Island Received September 19, 1962 GERSHENSON (1933) and SANDLERand BRAVER(1954) have clearly shown that following nondisjunction of X and Y in the Drosophila mehnogaster male, the frequency of recovery of XY sperm is markedly lower than that of nullo-X-nullo-Y sperm. Their suggestion to account for this discrepancy was to suppose that a chromosome which fails to pair with its homologue may be lost at meiosis. Such loss was found to be most pronounced in cases in which the X chromosome was deficient for a large portion of the basal heterochromatin ordinarily involved in pairing with the Y chromosome. Preliminary data ( ZIMMERING1962 and unpublished) have suggested that (1) from situations in which the homology between X and Y is greatly reduced, the rate of chromosome loss at meiosis can be appreciably decreased by tempera- ture treatment, and furthermore, that (2) such a decrease in the rate of loss need not necessarily involve an increase in the frequency of X-Y synapsis prior to anaphase I separation. A detailed account of these and subsequent experi- ments is presented below. MATERIALS AND METHODS Males possessing a modified X chromosome, Zns(1)y sc4-sc8, and the sc8.Y of MULLER( 1948) were employed in the initial temperature experiments. Zn(1)y scb, a long inversion of the X chromosome marked distally with the mutant y (yellow body), leaves most of the basal heterochromatin including bb+ and Block A at the proximal region, while Zn(l)sc8, also a long inversion of the X chromosome, transposes most of the basal heterochromatin including bb+ and Block A distally. -
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Research Article
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Kelly A. Dyer,*,1 Brooke E. White,1 Michael J. Bray,1 Daniel G. Pique´,1 and Andrea J. Betancourt* ,2 1Department of Genetics, University of Georgia 2Institute of Evolutionary Biology, University of Edinburgh, Ashworth Labs, Edinburgh, United Kingdom Present address: Institute for Population Genetics, University of Veterinary Medicine Vienna, Vienna 1210, Austria *Corresponding author: [email protected], [email protected]. Associate editor: Jody Hey Abstract In contrast to the rest of the genome, the Y chromosome is restricted to males and lacks recombination. As a result, Research article Y chromosomes are unable to respond efficiently to selection, and newly formed Y chromosomes degenerate until few genes remain. The rapid loss of genes from newly formed Y chromosomes has been well studied, but gene loss from highly degenerate Y chromosomes has only recently received attention. Here, we identify and characterize a Y to autosome duplication of the male fertility gene kl-5 that occurred during the evolution of the testacea group species of Drosophila. The duplication was likely DNA based, as other Y-linked genes remain on the Y chromosome, the locations of introns are conserved, and expression analyses suggest that regulatory elements remain linked. Genetic mapping reveals that the autosomal copy of kl-5 resides on the dot chromosome, a tiny autosome with strongly suppressed recombination. Molecular evolutionary analyses show that autosomal copies of kl-5 have reduced polymorphism and little recombination. Importantly, the rate of protein evolution of kl-5 has increased significantly in lineages where it is on the dot versus Y linked. -
Evolutionarily Ancient BAH–PHD Protein Mediates Polycomb Silencing
Evolutionarily ancient BAH–PHD protein mediates Polycomb silencing Elizabeth T. Wilesa,1, Kevin J. McNaughta,1, Gurmeet Kaurb, Jeanne M. L. Selkera, Tereza Ormsbya,2, L. Aravindb, and Eric U. Selkera,3 aInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403; and bNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894 Contributed by Eric U. Selker, March 18, 2020 (sent for review October 28, 2019; reviewed by Wolfgang Fischle and Steve Jacobsen) Methylation of histone H3 lysine 27 (H3K27) is widely recognized (NCU07505) that we show is critical for H3K27 methylation- as a transcriptionally repressive chromatin modification but the mediated silencing and therefore named it effector of Polycomb re- mechanism of repression remains unclear. We devised and imple- pression 1 (epr-1). It encodes a protein with a bromo-adjacent ho- mented a forward genetic scheme to identify factors required for mology (BAH) domain and plant homeodomain (PHD) finger. H3K27 methylation-mediated silencing in the filamentous fungus Although epr-1 mutants display phenotypic and gene-expression Neurospora crassa and identified a bromo-adjacent homology changes similar to strains lacking PRC2 components, H3K27 meth- (BAH)-plant homeodomain (PHD)-containing protein, EPR-1 (effec- ylation is essentially unaffected. We demonstrate that EPR-1 forms tor of polycomb repression 1; NCU07505). EPR-1 associates with nuclear foci, reminiscent of Polycomb bodies (24), and its genomic H3K27-methylated chromatin, and loss of EPR-1 de-represses H3K27- distribution is limited to, and dependent upon, H3K27-methylated methylated genes without loss of H3K27 methylation. EPR-1 is not chromatin, which may be recognized through its BAH domain.