Estimating Population Size in the Subdesert Mesite (Monias Benschi): New Methods and Implications for Conservation
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MADAGASCAR: the Wonders of the “8Th Continent” a Tropical Birding Custom Trip
MADAGASCAR: The Wonders of the “8th Continent” A Tropical Birding Custom Trip October 20—November 6, 2016 Guide: Ken Behrens All photos taken during this trip by Ken Behrens Annotated bird list by Jerry Connolly TOUR SUMMARY Madagascar has long been a core destination for Tropical Birding, and with the opening of a satellite office in the country several years ago, we further solidified our expertise in the “Eighth Continent.” This custom trip followed an itinerary similar to that of our main set-departure tour. Although this trip had a definite bird bias, it was really a general natural history tour. We took our time in observing and photographing whatever we could find, from lemurs to chameleons to bizarre invertebrates. Madagascar is rich in wonderful birds, and we enjoyed these to the fullest. But its mammals, reptiles, amphibians, and insects are just as wondrous and accessible, and a trip that ignored them would be sorely missing out. We also took time to enjoy the cultural riches of Madagascar, the small villages full of smiling children, the zebu carts which seem straight out of the Middle Ages, and the ingeniously engineered rice paddies. If you want to come to Madagascar and see it all… come with Tropical Birding! Madagascar is well known to pose some logistical challenges, especially in the form of the national airline Air Madagascar, but we enjoyed perfectly smooth sailing on this tour. We stayed in the most comfortable hotels available at each stop on the itinerary, including some that have just recently opened, and savored some remarkably good food, which many people rank as the best Madagascar Custom Tour October 20-November 6, 2016 they have ever had on any birding tour. -
Birding Madagascar 1-22 November 2018
Birding Madagascar 1-22 November 2018. Trip report compiled by Tomas Carlberg. 1 Front cover Daily log Red-capped Coua, sunbathing in Ankarafantsika National Park. Photo: Tomas Carlberg November 1st Some of us (TC, JN, and RN) flew Air France from Photos Arlanda, Stockholm at 06:00 to Paris, where we © All photos in this report: Tomas Carlberg. met OP (who flew from Gothenburg) and IF (flew For additional photos, see p. 30 ff. from Manchester). An 11 hrs flight took us to Antananarivo, where we landed just before Participants midnight. Once through after visa and passport control we met Zina at the airport. We stayed at IC Tomas Carlberg (Tour leader), Jonas Nordin, Hotel and fell asleep at 01:30. Sweden; Rolf Nordin, Sweden; Olof Persson, Sweden; Jesper Hornskov, Denmark; Eric November 2nd Schaumburg, Denmark; Hans Harrestrup Andersen, Woke up at 6, met the Danes (JH, ES, HW, and Denmark; Hans Wulffsberg, Denmark; Ian Fryer, UK HHA), and had breakfast. Changed c. 400 Euro each Serge “Zina” Raheritsiferana (organizer and driver), and got 1 540 000 ariary… Departure at 7:30 Fidson “Fidy” Albert Alberto (guide), and Lala. heading north towards Ankarafantsika NP. Saw a male Malagasy Harrier c. 16 km south of Ankazobe Correspondence (-18.45915, 47.160156), so stopped for birding [email protected] (Tomas Carlberg) there 9:45-10:05. Stop at 11:40 to buy sandwiches for lunch. Lunch with birding 12:55-13:15. Long Tour organizers transport today… Stopped for birding at bridge Serge “Zina” Raheritsiferana (Zina-Go Travel), over Betsiboka River 16:30-17:30; highlight here Stig Holmstedt. -
Madagascar: the 8Th Continent with Naturalist Journeys & Caligo Ventures Nov
Madagascar: The 8th Continent With Naturalist Journeys & Caligo Ventures Nov. 26 – Dec. 10, 2018 866.900.1146 800.426.7781 520.558.1146 [email protected] www.naturalistjourneys.com or find us on Facebook at Naturalist Journeys, LLC Naturalist Journeys, LLC / Caligo Ventures PO Box 16545 Portal, AZ 85632 PH: 520.558.1146 / 800.426.7781 Fax 650.471.7667 naturalistjourneys.com / caligo.com [email protected] / [email protected] Madagascar: The 8th Continent With Naturalist Journeys & Caligo Ventures Isolated from any continental landmass since the Cretaceous period, Madagascar has drifted through the Indian Ocean, following its own evolutionary course, having only five major terrestrial animal colonization events since the time of the dinosaurs. The result is an island where every land mammal is endemic, as are nearly half the bird species. Reptiles are well represented as well, like chameleons, and day and leaf-tailed geckos. The uniqueness of this island’s fauna makes it one of the world’s great destinations for the birdwatcher and naturalist, alike. Our tour features both birds and mammals. We focus on Madagascar’s most iconic and charismatic bird species (we hope to see over 95% of the endemics), as well as the Island's other oddities, like endearing lemurs and strikingly bizarre chameleons. We also focus on the Island’s geology and geography with resulting various habitats ― from the spiny forests of Ifaty with its towering baobabs and other-worldly Didierea octopus trees, to the verdant rainforests of Andasibe-Mantadia -
MADAGASCAR: the Wonders of the “8Th Continent” a Tropical Birding Set Departure
MADAGASCAR: The Wonders of the “8th Continent” A Tropical Birding Set Departure November 3—28, 2013 Guide: Ken Behrens All photos taken during this trip. All photos by Ken Behrens unless noted otherwise. TOUR SUMMARY Madagascar has long been a core destination for Tropical Birding, and with last year’s opening of a satellite office in the country, we have further solidified our expertise in the “Eighth Continent.” This was another highly successful set-departure tour to this special island. It included both the Northwestern Endemics Pre-Trip at the start and the Helmet Vanga extension to the Masoala Peninsula at the end. Although Madagascar poses some logistical challenges, especially in the form of the national airline Air Madagascar, we had no problems on this tour, not even a single delayed flight! The birding was great, with 196 species recorded, including almost all of the island’s endemic birds. As usual, the highlight was seeing all five of the incredible ground-rollers, from the roadrunner-like Long-tailed of the spiny forest to the wonderful rainforest-dwelling Scaly. There was a strong cast of vangas, including Helmet, Bernier’s, and Sickle-billed. In fact, we saw every member of the family save the mysterious Red-tailed Newtonia which is only regularly seen in the far south. As normal, the couas were also a favorite. From the shy and beautiful Red-breasted of Madagascar Set Departure Tour Nov. 3-28, 2013 the eastern rainforest to the huge Giant Coua of the dry western forest, we were looking for and at couas virtually every day! The bizarre mesites form a Malagasy endemic family, and we had superb extended views of all three members of the family. -
Wqfm: Statistically Consistent Genome-Scale Species Tree Estimation from Weighted Quartets
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.30.403352; this version posted December 1, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. wQFM: Statistically Consistent Genome-scale Species Tree Estimation from Weighted Quartets Mahim Mahbub1;y, Zahin Wahab1;y, Rezwana Reaz1;y, M. Saifur Rahman1, and Md. Shamsuzzoha Bayzid1,* 1Department of Computer Science and Engineering Bangladesh University of Engineering and Technology Dhaka-1205, Bangladesh yThese authors contributed equally to this work *Corresponding author: shams [email protected] Abstract Motivation: Species tree estimation from genes sampled from throughout the whole genome is complicated due to the gene tree-species tree discordance. Incom- plete lineage sorting (ILS) is one of the most frequent causes for this discordance, where alleles can coexist in populations for periods that may span several speciation events. Quartet-based summary methods for estimating species trees from a collec- tion of gene trees are becoming popular due to their high accuracy and statistical guarantee under ILS. Generating quartets with appropriate weights, where weights correspond to the relative importance of quartets, and subsequently amalgamating the weighted quartets to infer a single coherent species tree allows for a statistically consistent way of estimating species trees. However, handling weighted quartets is challenging. Results: We propose wQFM, a highly accurate method for species tree es- timation from multi-locus data, by extending the quartet FM (QFM) algorithm to a weighted setting. -
Birds of Madagascar and Their Conservation
Birds of Madagascar and Their Conservation byMichael S. Putnam Department ofZoology University of Wisconsin tl Madison, Wisconsin I 100 plus Ecstatic Testimonials Striding up a steep hillside with the Council for Bird Preservation (Collar loud whisper of a rushing stream in and Stuart, 1985), 28 species of Warm, nurturing foods. the background, I stepped into a Malagasy birds are threatened and 14 mist-net lane I had cut a week before. species are considered as near Cook monthly, As I entered the clearing, a medium threatened. These species represent freeze in packets, sized brown bird squawked and flew between one-fifth and one-third of off from eye-level. Carefully search the island's endemic bird species. serve in seconds. ing the nearby vegetation, I became one of a lucky handful of foreigners The primary threats to Madagas At fine stores, orcall... to ever find a nest of the Brown car's birds today, habitat loss and Mesite (Mesitornis unicolor), a rare overhunting, have already eliminated 1(800) BIRD YUM forest-dwelling relative of rails. The many unique Malagasy creatures. 1 (800) 247-3986 large egg, delicately colored in sal Since people first arrived on Mada mon with liver-colored spots, rested gascar 1500 to 2000 years ago, much 13330 Bessemer Street precariously in a frail, dove-like nest of the island has been deforested, Van Nuys, CA91401-3000 positioned at the end of a sloping leaving the red lateritic soil exposed (818) 997-0598 sapling. This encounter with the and eroding, with little chance for Brown Mesite is just one of many forest regeneration. -
Spiny Forest
Investigating the impact of habitat change on the bird and reptile fauna of southern Madagascar’s spiny forest Final report to African Bird Club Conservation Programme Charlie J. Gardner PhD candidate Durrell Institute of Conservation and Ecology School of Anthropology and Conservation University of Kent Canterbury Kent CT2 7NS [email protected] 29 October 2012 ALL PHOTOGRAPHS IN THIS REPORT ARE THE PROPERTY OF LOUISE JASPER AND MAY NOT BE REPRODUCED WITHOUT PERMISSION. Cover photos, clockwise from top left: 1 moderately-degraded spiny forest at Ranobe study site, 2 male Lafresnaye’s vanga (Xenopirostris xenopirostris ) perched on flowering Didierea madagascariensis , the dominant and characteristic tree of the spiny forest at Ranobe, 3 Running coua ( Coua cursor ), a spiny forest endemic and member of the endemic subfamily Couinae, 4 Adult male Furcifer labordi , the world’s only annual tetrapod. Expedition members Charlie Gardner Principal investigator Louise Jasper Research assistant (birds and reptiles) Julio-Josepha Duchene Research assistant (reptiles) Eonintsoa Research assistant (reptiles) Toto Local guide (Site 1) Alexis Local guide (Site 1) Rekamo Local guide (Site 2) Milison Justin Local guide (Site 2) Jean-Paul Local guide (Site 3) Sambiasy Local guide (Site 3) Mameno Cook (Sites 1 & 2) Saholy Cook (Site 3) Fig 1: Expedition members at Site 2, from left to right: Charlie Gardner, Eonintsoa, Julio Josepha Duchene, Louise Jasper. Front row: Milison Justin, Rekamo Background Madagascar is recognised as the world’s number one conservation priority, possessing unparalleled levels of diversity and endemism, coupled with high rates of forest loss. While the avifauna of the country is relatively impoverished with only 209 breeding species, a full 52% of these are endemic (Goodman & Hawkins 2008), giving Madagascar the highest proportion of endemic bird species of any major landmass in the world (Hawkins & Goodman 2003). -
Attempting to See One Member of Each of the World's Bird Families Has
Attempting to see one member of each of the world’s bird families has become an increasingly popular pursuit among birders. Given that we share that aim, the two of us got together and designed what we believe is the most efficient strategy to pursue this goal. Editor’s note: Generally, the scientific names for families (e.g., Vireonidae) are capital- ized, while the English names for families (e.g., vireos) are not. In this article, however, the English names of families are capitalized for ease of recognition. The ampersand (&) is used only within the name of a family (e.g., Guans, Chachalacas, & Curassows). 8 Birder’s Guide to Listing & Taxonomy | October 2016 Sam Keith Woods Ecuador Quito, [email protected] Barnes Hualien, Taiwan [email protected] here are 234 extant bird families recognized by the eBird/ Clements checklist (2015, version 2015), which is the offi- T cial taxonomy for world lists submitted to ABA’s Listing Cen- tral. The other major taxonomic authority, the IOC World Bird List (version 5.1, 2015), lists 238 families (for differences, see Appendix 1 in the expanded online edition). While these totals may appear daunting, increasing numbers of birders are managing to see them all. In reality, save for the considerable time and money required, finding a single member of each family is mostly straightforward. In general, where family totals or family names are mentioned below, we use the eBird/Clements taxonomy unless otherwise stated. Family Feuds: How do world regions compare? In descending order, the number of bird families supported by con- tinental region are: Asia (125 Clements/124 IOC), Africa (122 Clem- ents/126 IOC), Australasia (110 Clements/112 IOC), North America (103 Clements/IOC), South America (93 Clements/94 IOC), Europe (73 Clements/74 IOC ), and Antarctica (7 Clements/IOC). -
Ultimate Madagascar
Subdesert Mesite (Craig Robson) ULTIMATE MADAGASCAR 10 – 30 OCTOBER 2017 LEADER: CRAIG ROBSON This year’s tour delivered an impressive selection of Malagasy specialities. Iconic species like the ground rollers, asities, and mesites were all seen well, and other highlights included feeding Bernier’s Teal, several Humblot’s Herons, Madagascan Grebe, Madagascan Cuckoo-Hawk and Madagascan Sparrowhawk at their nests, Madagascan Fish Eagle, nest-building Madagascan Wood Rails, Madagascan Plover, Madagascan Snipe, Madagascan Sandgrouse, 10-11 species of coua, roosting Madagascan Owl and Collared Nightjar, Cuckoo Roller, Madagascan Pygmy Kingfisher, 20 species of vanga, including Crossley’s and the much- 1 BirdQuest Tour Report: Ultimate Madagascar www.birdquest-tours.com wanted Helmet, Red-tailed Newtonia, both Brown and Grey Emutails, White-throated Oxylabes on the nest, Wedge-tailed Jery, Appert’s Tetraka, and Madagascan Yellowbrow. We also saw a very respectable 35 species of mammal. 25 species of lemur were headlined by the impeccable Indri, and the likes of Diademed Sifaka, while Lesser Hedgehog Tenrec, the lovely Ring-tailed Mongoose, and scores of Humpback Whales are also worthy of a mention. The lucky few, even had brief views of a road-crossing Fossa. For those with a more in-depth and wide-ranging love of wildlife, there were 34 species of reptiles and amphibians to be appreciated, and numerous interesting plants and insects, from Giraffe-necked Weevils to Hissing Cockroaches. Brown Mesite can be extremely tame (Craig Robson) The tour began with a long drive from the capital, Antananarivo, to Ranomafana National Park. There was little for us to see on the way, though we did gain a strong impression of what much of interior Madagascar looks like. -
A Community Effort to Annotate the Chicken Genome
bioRxiv preprint doi: https://doi.org/10.1101/012559; this version posted December 12, 2014. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Submitted to Cytogenetic and Genome Research as part of the Third Report on Chicken Genes and Chromosomes The Avian RNAseq Consortium: a community effort to annotate the chicken genome (Prepared by Jacqueline Smith, David W. Burt and the Avian RNAseq Consortium) Publication of the chicken genome sequence in 2004 (International Chicken Genome Sequencing Consortium 2004) highlighted the beginning of a revolution in avian genomics. Progression of DNA sequencing technologies and data handling capabilities has also meant that genome sequencing and assembly is now a relatively simple, fast and inexpensive procedure. The success seen with the chicken genome was soon followed by the completion of the zebra finch genome (Warren et al., 2010), an important model for neurobiology (Clayton et al., 2009), again based on Sanger sequencing. In recent years the rapid advances in Next Generation Sequencing (NGS) technologies, hardware and software have meant that many more genomes can now be sequenced faster and cheaper than ever before (Metzker, 2010). The first avian genome to be sequenced by NGS methods was the turkey (Dalloul et al., 2010), which was also integrated with genetic and physical maps thus providing an assembly of high quality, even at the chromosome level. Recently, NGS has been used to sequence the genomes of a further 42 avian species, as part of the G10K initiative (Genome 10K Community of Scientists, 2009). -
How Birds Combat Ectoparasites
The Open Ornithology Journal, 2010, 3, 41-71 41 Open Access How Birds Combat Ectoparasites Dale H. Clayton*,1, Jennifer A. H. Koop1, Christopher W. Harbison1,2, Brett R. Moyer1,3 and Sarah E. Bush1,4 1Department of Biology, University of Utah, Salt Lake City, UT 84112, USA; 2Current address: Biology Department, Siena College, Loudonville, NY, 12211, USA; 3Current address: Providence Day School, Charlotte, NC, 28270, USA; 4Natural History Museum and Biodiversity Research Center, University of Kansas, Lawrence, Kansas 66045, USA Abstract: Birds are plagued by an impressive diversity of ectoparasites, ranging from feather-feeding lice, to feather- degrading bacteria. Many of these ectoparasites have severe negative effects on host fitness. It is therefore not surprising that selection on birds has favored a variety of possible adaptations for dealing with ectoparasites. The functional signifi- cance of some of these defenses has been well documented. Others have barely been studied, much less tested rigorously. In this article we review the evidence - or lack thereof - for many of the purported mechanisms birds have for dealing with ectoparasites. We concentrate on features of the plumage and its components, as well as anti-parasite behaviors. In some cases, we present original data from our own recent work. We make recommendations for future studies that could im- prove our understanding of this poorly known aspect of avian biology. Keywords: Grooming, preening, dusting, sunning, molt, oil, anting, fumigation. INTRODUCTION 2) Mites and ticks (Acari): many families [6-9]. As a class, birds (Aves) are the most thoroughly studied 3) Leeches: four families [10]. group of organisms on earth. -
Columbiformes ~ Pterocliformes ~ Mesitornithiformes
Birds of the World part 2 Galloanseres, Neoaves: Columbea NEOGNATHAE (the rest of the birds!): Galloanseres • ORDER ANSERIFORMES – waterfowl • Family Anhimidae – screamers (3 species) • Family Anseranatidae – magpie goose (1 species) • Family Anatidae – ducks, geese, and swans (173 species) • ORDER GALLIFORMES – landfowl • Family Megapodiidae – megapodes (21 species) • Family Cracidae – chachalacas, curassows, and guans (55 species) • Family Numididae – guineafowl (6 species) • Family Odontophoridae – New World quail (34 species) • Family Phasianidae – pheasants and allies (183 species) NEOGNATHAE : Neoaves (the rest of the birds!): COLUMBEA • ORDER PODICIPEDIFORMES – Family Podicipedidae – grebes (23 species) • ORDER PHOENICOPTERIFORMES – Family Phoenicopteridae – flamingos (6 species) • ORDER COLUMBIFORMES – Family Columbidae – pigeons and doves (334 species) • ORDER PTEROCLIDIFORMES – Family Pteroclididae – sandgrouse (16 species) • ORDER MESITORNITHIFORMES – Family Mesitornithidae – mesites (3 species) NEOGNATHAE : Galloanseres • ORDER ANSERIFORMES – waterfowl • Family Anhimidae – screamers (3 species) • Family Anseranatidae – magpie goose (1 species) • Family Anatidae – ducks, geese, and swans (173 species) • ORDER GALLIFORMES – landfowl • Family Megapodiidae – megapodes (21 species) • Family Cracidae – chachalacas, curassows, and guans (55 species) • Family Numididae – guineafowl (6 species) • Family Odontophoridae – New World quail (34 species) • Family Phasianidae – pheasants and allies (183 species) southern or crested screamer