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A Comparative Evaluation of Matlab, Octave, R, and Julia on Maya 1 Introduction
A Comparative Evaluation of Matlab, Octave, R, and Julia on Maya Sai K. Popuri and Matthias K. Gobbert* Department of Mathematics and Statistics, University of Maryland, Baltimore County *Corresponding author: [email protected], www.umbc.edu/~gobbert Technical Report HPCF{2017{3, hpcf.umbc.edu > Publications Abstract Matlab is the most popular commercial package for numerical computations in mathematics, statistics, the sciences, engineering, and other fields. Octave is a freely available software used for numerical computing. R is a popular open source freely available software often used for statistical analysis and computing. Julia is a recent open source freely available high-level programming language with a sophisticated com- piler for high-performance numerical and statistical computing. They are all available to download on the Linux, Windows, and Mac OS X operating systems. We investigate whether the three freely available software are viable alternatives to Matlab for uses in research and teaching. We compare the results on part of the equipment of the cluster maya in the UMBC High Performance Computing Facility. The equipment has 72 nodes, each with two Intel E5-2650v2 Ivy Bridge (2.6 GHz, 20 MB cache) proces- sors with 8 cores per CPU, for a total of 16 cores per node. All nodes have 64 GB of main memory and are connected by a quad-data rate InfiniBand interconnect. The tests focused on usability lead us to conclude that Octave is the most compatible with Matlab, since it uses the same syntax and has the native capability of running m-files. R was hampered by somewhat different syntax or function names and some missing functions. -
KNIME Big Data Workshop
KNIME Big Data Workshop Björn Lohrmann KNIME © 2018 KNIME.com AG. All Rights Reserved. Variety, Velocity, Volume • Variety: – Integrating heterogeneous data… – ... and tools • Velocity: – Real time scoring of millions of records/sec – Continuous data streams – Distributed computation • Volume: – From small files... – ...to distributed data repositories – Moving computation to the data © 2018 KNIME.com AG. All Rights Reserved. 2 2 Variety © 2018 KNIME.com AG. All Rights Reserved. 3 The KNIME Analytics Platform: Open for Every Data, Tool, and User Data Scientist Business Analyst KNIME Analytics Platform External Native External Data Data Access, Analysis, and Legacy Connectors Visualization, and Reporting Tools Distributed / Cloud Execution © 2018 KNIME.com AG. All Rights Reserved. 4 Data Integration © 2018 KNIME.com AG. All Rights Reserved. 5 Integrating R and Python © 2018 KNIME.com AG. All Rights Reserved. 6 Modular Integrations © 2018 KNIME.com AG. All Rights Reserved. 7 Other Programming/Scripting Integrations © 2018 KNIME.com AG. All Rights Reserved. 8 Velocity © 2018 KNIME.com AG. All Rights Reserved. 9 Velocity • High Demand Scoring/Prediction: – Scoring using KNIME Server – Scoring with the KNIME Managed Scoring Service • Continuous Data Streams – Streaming in KNIME © 2018 KNIME.com AG. All Rights Reserved. 10 What is High Demand Scoring? • I have a workflow that takes data, applies an algorithm/model and returns a prediction. • I need to deploy that to hundreds or thousands of end users • I need to update the model/workflow periodically © 2018 KNIME.com AG. All Rights Reserved. 11 How to make a scoring workflow • Use JSON Input/Output nodes • Put workflow on KNIME Server -> REST endpoint for scoring © 2018 KNIME.com AG. -
Text Mining Course for KNIME Analytics Platform
Text Mining Course for KNIME Analytics Platform KNIME AG Copyright © 2018 KNIME AG Table of Contents 1. The Open Analytics Platform 2. The Text Processing Extension 3. Importing Text 4. Enrichment 5. Preprocessing 6. Transformation 7. Classification 8. Visualization 9. Clustering 10. Supplementary Workflows Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 2 Noncommercial-Share Alike license 1 https://creativecommons.org/licenses/by-nc-sa/4.0/ Overview KNIME Analytics Platform Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 3 Noncommercial-Share Alike license 1 https://creativecommons.org/licenses/by-nc-sa/4.0/ What is KNIME Analytics Platform? • A tool for data analysis, manipulation, visualization, and reporting • Based on the graphical programming paradigm • Provides a diverse array of extensions: • Text Mining • Network Mining • Cheminformatics • Many integrations, such as Java, R, Python, Weka, H2O, etc. Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 4 Noncommercial-Share Alike license 2 https://creativecommons.org/licenses/by-nc-sa/4.0/ Visual KNIME Workflows NODES perform tasks on data Not Configured Configured Outputs Inputs Executed Status Error Nodes are combined to create WORKFLOWS Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 5 Noncommercial-Share Alike license 3 https://creativecommons.org/licenses/by-nc-sa/4.0/ Data Access • Databases • MySQL, MS SQL Server, PostgreSQL • any JDBC (Oracle, DB2, …) • Files • CSV, txt -
Data Visualization in Python
Data visualization in python Day 2 A variety of packages and philosophies • (today) matplotlib: http://matplotlib.org/ – Gallery: http://matplotlib.org/gallery.html – Frequently used commands: http://matplotlib.org/api/pyplot_summary.html • Seaborn: http://stanford.edu/~mwaskom/software/seaborn/ • ggplot: – R version: http://docs.ggplot2.org/current/ – Python port: http://ggplot.yhathq.com/ • Bokeh (live plots in your browser) – http://bokeh.pydata.org/en/latest/ Biocomputing Bootcamp 2017 Matplotlib • Gallery: http://matplotlib.org/gallery.html • Top commands: http://matplotlib.org/api/pyplot_summary.html • Provides "pylab" API, a mimic of matlab • Many different graph types and options, some obscure Biocomputing Bootcamp 2017 Matplotlib • Resulting plots represented by python objects, from entire figure down to individual points/lines. • Large API allows any aspect to be tweaked • Lengthy coding sometimes required to make a plot "just so" Biocomputing Bootcamp 2017 Seaborn • https://stanford.edu/~mwaskom/software/seaborn/ • Implements more complex plot types – Joint points, clustergrams, fitted linear models • Uses matplotlib "under the hood" Biocomputing Bootcamp 2017 Others • ggplot: – (Original) R version: http://docs.ggplot2.org/current/ – A recent python port: http://ggplot.yhathq.com/ – Elegant syntax for compactly specifying plots – but, they can be hard to tweak – We'll discuss this on the R side tomorrow, both the basics of both work similarly. • Bokeh – Live, clickable plots in your browser! – http://bokeh.pydata.org/en/latest/ -
Sage for Lattice-Based Cryptography
Sage for Lattice-based Cryptography Martin R. Albrecht and Léo Ducas Oxford Lattice School Outline Sage Lattices Rings Sage Blurb Sage open-source mathematical software system “Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab.” Sage is a free open-source mathematics software system licensed under the GPL. It combines the power of many existing open-source packages into a common Python-based interface. How to use it command line run sage local webapp run sage -notebook=jupyter hosted webapp https://cloud.sagemath.com 1 widget http://sagecell.sagemath.org 1On SMC you have the choice between “Sage Worksheet” and “Jupyter Notebook”. We recommend the latter. Python & Cython Sage does not come with yet-another ad-hoc mathematical programming language, it uses Python instead. • one of the most widely used programming languages (Google, IML, NASA, Dropbox), • easy for you to define your own data types and methods on it (bitstreams, lattices, cyclotomic rings, :::), • very clean language that results in easy to read code, • a huge number of libraries: statistics, networking, databases, bioinformatic, physics, video games, 3d graphics, numerical computation (SciPy), and pure mathematic • easy to use existing C/C++ libraries from Python (via Cython) Sage =6 Python Sage Python 1/2 1/2 1/2 0 2^3 2^3 8 1 type(2) type(2) <type 'sage.rings.integer.Integer'> <type 'int'> Sage =6 Python Sage Python type(2r) type(2r) <type 'int'> SyntaxError: invalid syntax type(range(10)[0]) type(range(10)[0]) <type 'int'> <type 'int'> -
Principal Components Analysis Tutorial 4 Yang
Principal Components Analysis Tutorial 4 Yang 1 Objectives Understand the principles of principal components analysis (PCA) Know the principal components analysis method Study the PCA function of sickit-learn.decomposition Process the data set by the PCA of sickit-learn Learn to apply PCA in a reality example 2 Principal Components Analysis Method: ̶ Subtract the mean ̶ Calculate the covariance matrix ̶ Calculate the eigenvectors and eigenvalues of the covariance matrix ̶ Choosing components and forming a feature vector ̶ Deriving the new data set 3 Example 1 x y 퐷푎푡푎 = 2.5 2.4 0.5 0.7 2.2 2.9 1.9 2.2 3.1 3.0 2.3 2.7 2 1.6 1 1.1 1.5 1.6 1.1 0.9 4 sklearn.decomposition.PCA It uses the LAPACK implementation of the full SVD or a randomized truncated SVD by the method of Halko et al. 2009, depending on the shape of the input data and the number of components to extract. It can also use the scipy.sparse.linalg ARPACK implementation of the truncated SVD. Notice that this class does not upport sparse input. 5 Parameters of PCA n_components: Number of components to keep. svd_solver: if n_components is not set: n_components == auto: default, if the input data is larger than 500x500 min (n_samples, n_features), default=None and the number of components to extract is lower than 80% of the smallest dimension of the data, then the more efficient ‘randomized’ method is enabled. if n_components == ‘mle’ and svd_solver == ‘full’, Otherwise the exact full SVD is computed and Minka’s MLE is used to guess the dimension optionally truncated afterwards. -
User Manual QT
multichannel systems* User Manual QT Information in this document is subject to change without notice. No part of this document may be reproduced or transmitted without the express written permission of Multi Channel Systems MCS GmbH. While every precaution has been taken in the preparation of this document, the publisher and the author assume no responsibility for errors or omissions, or for damages resulting from the use of information contained in this document or from the use of programs and source code that may accompany it. In no event shall the publisher and the author be liable for any loss of profit or any other commercial damage caused or alleged to have been caused directly or indirectly by this document. © 2006-2007 Multi Channel Systems MCS GmbH. All rights reserved. Printed: 2007-01-25 Multi Channel Systems MCS GmbH Aspenhaustraße 21 72770 Reutlingen Germany Fon +49-71 21-90 92 5 - 0 Fax +49-71 21-90 92 5 -11 [email protected] www.multichannelsystems.com Microsoft and Windows are registered trademarks of Microsoft Corporation. Products that are referred to in this document may be either trademarks and/or registered trademarks of their respective holders and should be noted as such. The publisher and the author make no claim to these trademarks. Table Of Contents 1 Introduction 1 1.1 About this Manual 1 2 Important Information and Instructions 3 2.1 Operator's Obligations 3 2.2 Guaranty and Liability 3 2.3 Important Safety Advice 4 2.4 Terms of Use for the program 5 2.5 Limitation of Liability 5 3 First Use 7 3.1 -
A Comparison of Open Source Tools for Data Science
2015 Proceedings of the Conference on Information Systems Applied Research ISSN: 2167-1508 Wilmington, North Carolina USA v8 n3651 __________________________________________________________________________________________________________________________ A Comparison of Open Source Tools for Data Science Hayden Wimmer Department of Information Technology Georgia Southern University Statesboro, GA 30260, USA Loreen M. Powell Department of Information and Technology Management Bloomsburg University Bloomsburg, PA 17815, USA Abstract The next decade of competitive advantage revolves around the ability to make predictions and discover patterns in data. Data science is at the center of this revolution. Data science has been termed the sexiest job of the 21st century. Data science combines data mining, machine learning, and statistical methodologies to extract knowledge and leverage predictions from data. Given the need for data science in organizations, many small or medium organizations are not adequately funded to acquire expensive data science tools. Open source tools may provide the solution to this issue. While studies comparing open source tools for data mining or business intelligence exist, an update on the current state of the art is necessary. This work explores and compares common open source data science tools. Implications include an overview of the state of the art and knowledge for practitioners and academics to select an open source data science tool that suits the requirements of specific data science projects. Keywords: Data Science Tools, Open Source, Business Intelligence, Predictive Analytics, Data Mining. 1. INTRODUCTION Data science is an expensive endeavor. One such example is JMP by SAS. SAS is a primary Data science is an emerging field which provider of data science tools. JMP is one of the intersects data mining, machine learning, more modestly priced tools from SAS with the predictive analytics, statistics, and business price for JMP Pro listed as $14,900. -
A Study of Open Source Data Mining Tools and Its Applications
Research Journal of Applied Sciences, Engineering and Technology 10(10): 1108-1132, 2015 ISSN: 2040-7459; e-ISSN: 2040-7467 © Maxwell Scientific Organization, 2015 Submitted: January 31, 2015 Accepted: March 12, 2015 Published: August 05, 2015 A Study of Open Source Data Mining Tools and its Applications P. Subathra, R. Deepika, K. Yamini, P. Arunprasad and Shriram K. Vasudevan Department of Computer Science and Engineering, Amrita School of Engineering, Amrita Vishwa Vidyapeetham (University), Coimbatore, India Abstract: Data Mining is a technology that is used for the process of analyzing and summarizing useful information from different perspectives of data. The importance of choosing data mining software tools for the developing applications using mining algorithms has led to the analysis of the commercially available open source data mining tools. The study discusses about the following likeness of the data mining tools-KNIME, WEKA, ORANGE, R Tool and Rapid Miner. The Historical Development and state-of-art; (i) The Applications supported, (ii) Data mining algorithms are supported by each tool, (iii) The pre-requisites and the procedures to install a tool, (iv) The input file format supported by each tool. To extract useful information from these data effectively and efficiently, data mining tools are used. The availability of many open source data mining tools, there is an increasing challenge in deciding upon the apace-updated tools for a given application. This study has provided a brief study about the open source knowledge discovery tools with their installation process, algorithms support and input file formats support. Keywords: Data mining, KNIME, ORANGE, Rapid Miner, R-tool, WEKA INTRODUCTION correctness in the classification of the data along with its accuracy. -
Pandas: Powerful Python Data Analysis Toolkit Release 0.25.3
pandas: powerful Python data analysis toolkit Release 0.25.3 Wes McKinney& PyData Development Team Nov 02, 2019 CONTENTS i ii pandas: powerful Python data analysis toolkit, Release 0.25.3 Date: Nov 02, 2019 Version: 0.25.3 Download documentation: PDF Version | Zipped HTML Useful links: Binary Installers | Source Repository | Issues & Ideas | Q&A Support | Mailing List pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. See the overview for more detail about whats in the library. CONTENTS 1 pandas: powerful Python data analysis toolkit, Release 0.25.3 2 CONTENTS CHAPTER ONE WHATS NEW IN 0.25.2 (OCTOBER 15, 2019) These are the changes in pandas 0.25.2. See release for a full changelog including other versions of pandas. Note: Pandas 0.25.2 adds compatibility for Python 3.8 (GH28147). 1.1 Bug fixes 1.1.1 Indexing • Fix regression in DataFrame.reindex() not following the limit argument (GH28631). • Fix regression in RangeIndex.get_indexer() for decreasing RangeIndex where target values may be improperly identified as missing/present (GH28678) 1.1.2 I/O • Fix regression in notebook display where <th> tags were missing for DataFrame.index values (GH28204). • Regression in to_csv() where writing a Series or DataFrame indexed by an IntervalIndex would incorrectly raise a TypeError (GH28210) • Fix to_csv() with ExtensionArray with list-like values (GH28840). 1.1.3 Groupby/resample/rolling • Bug incorrectly raising an IndexError when passing a list of quantiles to pandas.core.groupby. DataFrameGroupBy.quantile() (GH28113). -
Limits of Pgl(3)-Translates of Plane Curves, I
LIMITS OF PGL(3)-TRANSLATES OF PLANE CURVES, I PAOLO ALUFFI, CAREL FABER Abstract. We classify all possible limits of families of translates of a fixed, arbitrary complex plane curve. We do this by giving a set-theoretic description of the projective normal cone (PNC) of the base scheme of a natural rational map, determined by the curve, 8 N from the P of 3 × 3 matrices to the P of plane curves of degree d. In a sequel to this paper we determine the multiplicities of the components of the PNC. The knowledge of the PNC as a cycle is essential in our computation of the degree of the PGL(3)-orbit closure of an arbitrary plane curve, performed in [5]. 1. Introduction In this paper we determine the possible limits of a fixed, arbitrary complex plane curve C , obtained by applying to it a family of translations α(t) centered at a singular transformation of the plane. In other words, we describe the curves in the boundary of the PGL(3)-orbit closure of a given curve C . Our main motivation for this work comes from enumerative geometry. In [5] we have determined the degree of the PGL(3)-orbit closure of an arbitrary (possibly singular, re- ducible, non-reduced) plane curve; this includes as special cases the determination of several characteristic numbers of families of plane curves, the degrees of certain maps to moduli spaces of plane curves, and isotrivial versions of the Gromov-Witten invariants of the plane. A description of the limits of a curve, and in fact a more refined type of information is an essential ingredient of our approach. -
MATLAB Commands in Numerical Python (Numpy) 1 Vidar Bronken Gundersen /Mathesaurus.Sf.Net
MATLAB commands in numerical Python (NumPy) 1 Vidar Bronken Gundersen /mathesaurus.sf.net MATLAB commands in numerical Python (NumPy) Copyright c Vidar Bronken Gundersen Permission is granted to copy, distribute and/or modify this document as long as the above attribution is kept and the resulting work is distributed under a license identical to this one. The idea of this document (and the corresponding xml instance) is to provide a quick reference for switching from matlab to an open-source environment, such as Python, Scilab, Octave and Gnuplot, or R for numeric processing and data visualisation. Where Octave and Scilab commands are omitted, expect Matlab compatibility, and similarly where non given use the generic command. Time-stamp: --T:: vidar 1 Help Desc. matlab/Octave Python R Browse help interactively doc help() help.start() Octave: help -i % browse with Info Help on using help help help or doc doc help help() Help for a function help plot help(plot) or ?plot help(plot) or ?plot Help for a toolbox/library package help splines or doc splines help(pylab) help(package=’splines’) Demonstration examples demo demo() Example using a function example(plot) 1.1 Searching available documentation Desc. matlab/Octave Python R Search help files lookfor plot help.search(’plot’) Find objects by partial name apropos(’plot’) List available packages help help(); modules [Numeric] library() Locate functions which plot help(plot) find(plot) List available methods for a function methods(plot) 1.2 Using interactively Desc. matlab/Octave Python R Start session Octave: octave -q ipython -pylab Rgui Auto completion Octave: TAB or M-? TAB Run code from file foo(.m) execfile(’foo.py’) or run foo.py source(’foo.R’) Command history Octave: history hist -n history() Save command history diary on [..] diary off savehistory(file=".Rhistory") End session exit or quit CTRL-D q(save=’no’) CTRL-Z # windows sys.exit() 2 Operators Desc.