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Checklist of Calicioid Lichens and Fungi for Genera with Members in Temperate Western North America Draft: 2012-03-13
Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Checklist of Calicioid Lichens and Fungi For Genera with Members in Temperate Western North America Draft: 2012-03-13 by E. B. Peterson Calicium abietinum, EBP#4640 1 Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Genera Acroscyphus Lév. Brucea Rikkinen Calicium Pers. Chaenotheca Th. Fr. Chaenothecopsis Vainio Coniocybe Ach. = Chaenotheca "Cryptocalicium" – potentially undescribed genus; taxonomic placement is not known but there are resemblances both to Mycocaliciales and Onygenales Cybebe Tibell = Chaenotheca Cyphelium Ach. Microcalicium Vainio Mycocalicium Vainio Phaeocalicium A.F.W. Schmidt Sclerophora Chevall. Sphinctrina Fr. Stenocybe (Nyl.) Körber Texosporium Nádv. ex Tibell & Hofsten Thelomma A. Massal. Tholurna Norman Additional genera are primarily tropical, such as Pyrgillus, Tylophoron About the Species lists Names in bold are believed to be currently valid names. Old synonyms are indented and listed with the current name following (additional synonyms can be found in Esslinger (2011). Names in quotes are nicknames for undescribed species. Names given within tildes (~) are published, but may not be validly published. Underlined species are included in the checklist for North America north of Mexico (Esslinger 2011). Names are given with authorities and original citation date where possible, followed by a colon. Additional citations are given after the colon, followed by a series of abbreviations for states and regions where known. States and provinces use the standard two-letter abbreviation. Regions include: NAm = North America; WNA = western North America (west of the continental divide); Klam = Klamath Region (my home territory). For those not known from North America, continental distribution may be given: SAm = South America; EUR = Europe; ASIA = Asia; Afr = Africa; Aus = Australia. -
Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
Fungal Diversity DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. Alternative fossil assignments resulted in very different time es- Caliciaceae is one of several ascomycete groups characterized timates and the comparison with the analysis based on a second- by producing prototunicate (thin-walled and evanescent) asci ary calibration demonstrates that the most likely placement of the and a mazaedium (an accumulation of loose, maturing spores fossil is close to a terminal node rather than a basal placement in covering the ascoma surface). -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Chaenotheca Chrysocephala Species Fact Sheet
SPECIES FACT SHEET Common Name: yellow-headed pin lichen Scientific Name: Chaenotheca chrysocephala (Turner ex Ach.) Th. Fr. Division: Ascomycota Class: Sordariomycetes Order: Trichosphaeriales Family: Coniocybaceae Technical Description: Crustose lichen. Photosynthetic partner Trebouxia. Thallus visible on substrate, made of fine grains or small lumps or continuous, greenish yellow. Sometimes thallus completely immersed and not visible on substrate. Spore-producing structure (apothecium) pin- like, comprised of a obovoid to broadly obconical head (capitulum) 0.2-0.3 mm diameter on a slender stalk, the stalk 0.6-1.3 mm tall and 0.04 -0.8 mm diameter; black or brownish black or brown with dense yellow colored powder on the upper part. Capitulum with fine chartreuse- yellow colored powder (pruina) on the under side. Upper side with a mass of powdery brown spores (mazaedium). Spore sacs (asci) cylindrical, 14-19 x 2.0-3.5 µm and disintegrating; spores arranged in one line in the asci (uniseriate), 1-celled, 6-9 x 4-5 µm, short ellipsoidal to globose with rough ornamentation of irregular cracks. Chemistry: all spot tests negative. Thallus and powder on stalk (pruina) contain vulpinic acid, which gives them the chartreuse-yellow color. This acid also colors Letharia spp., the wolf lichens. Other descriptions and illustrations: Nordic Lichen Flora 1999, Peterson (no date), Sharnoff (no date), Stridvall (no date), Tibell 1975. Distinctive Characters: (1) bright chartreuse-yellow thallus with yellow pruina under capitulum and on the upper part of the stalk, (2) spore mass brown, (3) spores unicellular (4) thallus of small yellow lumps. Similar species: Many other pin lichens look similar to Chaenotheca chrysocephala. -
A Provisional Checklist of the Lichens of Belarus
Opuscula Philolichenum, 17: 374-479. 2018. *pdf effectively published online 31December2018 via (http://sweetgum.nybg.org/philolichenum/) A Provisional Checklist of the Lichens of Belarus ANDREI TSURYKAU1 ABSTRACT. – A total of 606 species and five subspecific taxa of lichens and allied fungi are documented from Belarus based on combined historical (pre-1980) and modern (post-1980) records. Of these, 50 (8.3%) are represented by only historical reports, 235 (38.8%) are represented by only modern vouchers, and 310 (51.2%) are represented by both historical and modern records. Eleven species are known only from generalized published reports that lacked specific location data. Eighty-eight species are excluded as erroneous reports, or considered as doubtful records. KEYWORDS. – Biodiversity, distribution, lichenized fungi, historical baseline. INTRODUCTION Published accounts of the lichens of Belarus date to the end of the 18th century (Gilibert 1781). In the first phase of lichenological discovery in the country (1780–1900) lichens did not attract special attention and were reported among the general lists of vascular plants and fungi. However, 49 species were reported by the French botanist J.E. Gilibert, the Russian ethnographer of Belarusian origin N. Downar (Dovnar-Zapol'skiy) and Polish botanists K. Filipowicz and F. Błoński (Błoński 1888, 1889; Downar 1861; Filipowicz 1881; Gilibert 1781, 1792). In the early 20th century (1900–1925), there was a second phase of lichenological discovery in Belarus. During that time, Belarusian pioneer lichenologist V.P. Savicz and his wife L.I. Ljubitzkaja (later Savicz-Ljubitzkaja) reported 91 species new to the country (Ljubitzkaja 1914; Savicz 1909, 1910, 1911, 1925; Savicz & Savicz 1924; Wyssotzky et al. -
Morphological Variation and ITS Phylogeny of Chaenotheca Trichialis and C
Ann. Bot. Fennici 39: 73–80 ISSN 0003-455X Helsinki 8 March 2002 © Finnish Zoological and Botanical Publishing Board 2002 Morphological variation and ITS phylogeny of Chaenotheca trichialis and C. xyloxena (Coniocybaceae, lichenized ascomycetes) Leif Tibell Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden Received 1 June 2001, accepted 19 October 2001 Tibell, L. 2002: Morphological variation and ITS phylogeny of Chaenotheca trichialis and C. xyloxena (Coniocybaceae, lichenized ascomycetes). — Ann. Bot. Fennici 39: 73–80. Chaenotheca trichialis and C. xyloxena have been characterized by differences in their morphology, anatomy and ecology. They are, however, often difficult to distinguish. In a molecular phylogeny based on ITS1-5.8S-ITS2 rDNA sequences the specimens of C. xyloxena but not those of C. trichialis formed a monophyletic group. To some extent the analysis also revealed regional groupings. Key words: Ascomycotina, classification, Coniocybaceae, Chaenotheca, ITS, phylog- eny, rDNA Introduction wood, have during the second half of the twenti- eth century been accepted as probably closely Several Chaenotheca species have wide distri- related but morphologically distinct species. butions, occur in a variety of niches, and are Chaenotheca trichialis was described by Achar- morphologically very plastic. Since the ecophe- ius already in 1808, and C. xyloxena was de- notypic variation is considerable and not easily scribed by Nádvorník in 1934. They were ac- understood, it is often difficult to identify speci- cepted as distinct species by, for example, To- mens, and species delimitation is often problem- bolewski (1966), Tibell (1980, 1987, 1999), atic. In some habitats, the species are very easily Puntillo (1994), Goward (1999), and Selva and recognised, but in others different species seem Tibell (1999). -
Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria Succini Mägdefrau
RESEARCH ARTICLE Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria succini Mägdefrau Ulla Kaasalainen1*, Jochen Heinrichs2, Michael Krings3, Leena Myllys4, Heinrich Grabenhorst5, Jouko Rikkinen6, Alexander R. Schmidt1 1 Department of Geobiology, University of Göttingen, Göttingen, Germany, 2 Department of Biology and Geobio-Center, University of Munich (LMU), Munich, Germany, 3 Department of Earth and Environmental Sciences, University of Munich (LMU), and Bavarian State Collection for Palaeontology and Geology, Munich, Germany, 4 Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland, 5 c/o Amber Study Group, Geological-Palaeontological Institute and Museum, University of Hamburg, Hamburg, Germany, 6 Department of Biosciences, University of Helsinki, Helsinki, Finland * [email protected] OPEN ACCESS Abstract Citation: Kaasalainen U, Heinrichs J, Krings M, One of the most important issues in molecular dating studies concerns the incorporation of Myllys L, Grabenhorst H, Rikkinen J, et al. (2015) Alectorioid Morphologies in Paleogene Lichens: New reliable fossil taxa into the phylogenies reconstructed from DNA sequence variation in ex- Evidence and Re-Evaluation of the Fossil Alectoria tant taxa. Lichens are symbiotic associations between fungi and algae and/or cyanobacte- succini Mägdefrau. PLoS ONE 10(6): e0129526. ria. Several lichen fossils have been used as minimum age constraints in recent studies doi:10.1371/journal.pone.0129526 concerning the diversification of the Ascomycota. Recent evolutionary studies of Lecanoro- Academic Editor: Peter Wilf, Penn State University, mycetes, an almost exclusively lichen-forming class in the Ascomycota, have utilized the UNITED STATES Eocene amber inclusion Alectoria succinic as a minimum age constraint. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al.