Activation of Slit2/Robo1 Signaling Promotes Tumor the TGF-Β/Smads
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma
Anatomy and Pathology Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma Sarah L. Lake,1 Sarah E. Coupland,1 Azzam F. G. Taktak,2 and Bertil E. Damato3 PURPOSE. To detect deletions and loss of heterozygosity of disease is fatal in 92% of patients within 2 years of diagnosis. chromosome 3 in a rare subset of fatal, disomy 3 uveal mela- Clinical and histopathologic risk factors for UM metastasis noma (UM), undetectable by fluorescence in situ hybridization include large basal tumor diameter (LBD), ciliary body involve- (FISH). ment, epithelioid cytomorphology, extracellular matrix peri- ϩ ETHODS odic acid-Schiff-positive (PAS ) loops, and high mitotic M . Multiplex ligation-dependent probe amplification 3,4 5 (MLPA) with the P027 UM assay was performed on formalin- count. Prescher et al. showed that a nonrandom genetic fixed, paraffin-embedded (FFPE) whole tumor sections from 19 change, monosomy 3, correlates strongly with metastatic death, and the correlation has since been confirmed by several disomy 3 metastasizing UMs. Whole-genome microarray analy- 3,6–10 ses using a single-nucleotide polymorphism microarray (aSNP) groups. Consequently, fluorescence in situ hybridization were performed on frozen tissue samples from four fatal dis- (FISH) detection of chromosome 3 using a centromeric probe omy 3 metastasizing UMs and three disomy 3 tumors with Ͼ5 became routine practice for UM prognostication; however, 5% years’ metastasis-free survival. to 20% of disomy 3 UM patients unexpectedly develop metas- tases.11 Attempts have therefore been made to identify the RESULTS. Two metastasizing UMs that had been classified as minimal region(s) of deletion on chromosome 3.12–15 Despite disomy 3 by FISH analysis of a small tumor sample were found these studies, little progress has been made in defining the key on MLPA analysis to show monosomy 3. -
Expression Patterns of Slit and Robo Family Members in Adult Mouse Spinal Cord and Peripheral Nervous System
RESEARCH ARTICLE Expression patterns of Slit and Robo family members in adult mouse spinal cord and peripheral nervous system Lauren Carr1, David B. Parkinson1, Xin-peng Dun1,2* 1 Plymouth University Peninsula Schools of Medicine and Dentistry, Plymouth, Devon, United Kingdom, 2 Hubei University of Science and Technology, Xian-Ning City, Hubei, China a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 The secreted glycoproteins, Slit1-3, are classic axon guidance molecules that act as repul- sive cues through their well characterised receptors Robo1-2 to allow precise axon pathfind- ing and neuronal migration. The expression patterns of Slit1-3 and Robo1-2 have been OPEN ACCESS most characterized in the rodent developing nervous system and the adult brain, but little is Citation: Carr L, Parkinson DB, Dun X-p (2017) known about their expression patterns in the adult rodent peripheral nervous system. Here, Expression patterns of Slit and Robo family we report a detailed expression analysis of Slit1-3 and Robo1-2 in the adult mouse sciatic members in adult mouse spinal cord and nerve as well as their expression in the nerve cell bodies within the ventral spinal cord peripheral nervous system. PLoS ONE 12(2): (motor neurons) and dorsal root ganglion (sensory neurons). Our results show that, in the e0172736. doi:10.1371/journal.pone.0172736 adult mouse peripheral nervous system, Slit1-3 and Robo1-2 are expressed in the cell bod- Editor: Thomas H Gillingwater, University of ies and axons of both motor and sensory neurons. While Slit1 and Robo2 are only Edinburgh, UNITED KINGDOM expressed in peripheral axons and their cell bodies, Slit2, Slit3 and Robo1 are also Received: November 14, 2016 expressed in satellite cells of the dorsal root ganglion, Schwann cells and fibroblasts of Accepted: February 8, 2017 peripheral nerves. -
The Neuronal Repellent SLIT2 Is a Target for Repression by EZH2 in Prostate Cancer
Oncogene (2010) 29, 5370–5380 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 www.nature.com/onc ORIGINAL ARTICLE The neuronal repellent SLIT2 is a target for repression by EZH2 in prostate cancer JYu1,2,3,4, Q Cao2,3,JYu2,LWu1, A Dallol5,JLi2, G Chen2, C Grasso2,3, X Cao2,3, RJ Lonigro2,4, S Varambally2,3, R Mehra2,3, N Palanisamy2,3,JYWu1,8, F Latif5 and AM Chinnaiyan2,3,4,6,7 1Division of Hematology/Oncology, Department of Medicine, Northwestern University, Robert H. Lurie Comprehensive Cancer Center, Chicago, IL, USA; 2Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, USA; 3Department of Pathology, University of Michigan, Ann Arbor, MI, USA; 4Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI, USA; 5Department of Medical and Molecular Genetics, Institute of Biomedical Research, University of Birmingham, Edgbaston, UK; 6Howard Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA; 7Department of Urology, University of Michigan, Ann Arbor, MI, USA and 8Department of Neurology, Lurie Comprehensive Cancer Center, Center for Genetic Medicine, Northwestern University, Chicago, IL, USA The neuronal repellent SLIT2 is repressed in a number of also includes SLIT1 and SLIT3. The SLIT proteins are cancer types primarily through promoter hypermethyla- evolutionary conserved and contain an N-terminal signal tion. SLIT2, however, has not been studied in prostate peptide, four leucine-rich tandem repeats, seven or nine cancer. Through genome-wide location analysis we epidermal growth factor repeats, a laminin G domain and a identified SLIT2 as a target of polycomb group (PcG) C-terminal cysteine knot (Rothberg et al., 1988). -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Dynamic Landscape of Chromatin Accessibility and Transcriptomic
www.nature.com/scientificreports OPEN Dynamic landscape of chromatin accessibility and transcriptomic changes during diferentiation of human embryonic stem cells into dopaminergic neurons César Meléndez‑Ramírez1,2,6, Raquel Cuevas‑Diaz Duran3,6*, Tonatiuh Barrios‑García3, Mayela Giacoman‑Lozano3, Adolfo López‑Ornelas1,2,4, Jessica Herrera‑Gamboa3, Enrique Estudillo2, Ernesto Soto‑Reyes5, Iván Velasco1,2* & Víctor Treviño3* Chromatin architecture infuences transcription by modulating the physical access of regulatory factors to DNA, playing fundamental roles in cell identity. Studies on dopaminergic diferentiation have identifed coding genes, but the relationship with non‑coding genes or chromatin accessibility remains elusive. Using RNA‑Seq and ATAC‑Seq we profled diferentially expressed transcripts and open chromatin regions during early dopaminergic neuron diferentiation. Hierarchical clustering of diferentially expressed genes, resulted in 6 groups with unique characteristics. Surprisingly, the abundance of long non‑coding RNAs (lncRNAs) was high in the most downregulated transcripts, and depicted positive correlations with target mRNAs. We observed that open chromatin regions decrease upon diferentiation. Enrichment analyses of accessibility depict an association between open chromatin regions and specifc functional pathways and gene‑sets. A bioinformatic search for motifs allowed us to identify transcription factors and structural nuclear proteins that potentially regulate dopaminergic diferentiation. Interestingly, we also found changes in protein and mRNA abundance of the CCCTC‑binding factor, CTCF, which participates in genome organization and gene expression. Furthermore, assays demonstrated co‑localization of CTCF with Polycomb‑repressed chromatin marked by H3K27me3 in pluripotent cells, progressively decreasing in neural precursor cells and diferentiated neurons. Our work provides a unique resource of transcription factors and regulatory elements, potentially involved in the acquisition of human dopaminergic neuron cell identity. -
Slit Proteins: Molecular Guidance Cues for Cells Ranging from Neurons to Leukocytes Kit Wong, Hwan Tae Park*, Jane Y Wu* and Yi Rao†
583 Slit proteins: molecular guidance cues for cells ranging from neurons to leukocytes Kit Wong, Hwan Tae Park*, Jane Y Wu* and Yi Rao† Recent studies of molecular guidance cues including the Slit midline glial cells was thought to be abnormal [2,3]. family of secreted proteins have provided new insights into the Projection of the commissural axons was also abnormal: mechanisms of cell migration. Initially discovered in the nervous instead of crossing the midline once before projecting system, Slit functions through its receptor, Roundabout, and an longitudinally, the commissural axons from two sides of the intracellular signal transduction pathway that includes the nerve cord are fused at the midline in slit mutants [2,3]. Abelson kinase, the Enabled protein, GTPase activating proteins Because the midline glial cells are known to be important and the Rho family of small GTPases. Interestingly, Slit also in axon guidance, the commissural axon phenotype in slit appears to use Roundabout to control leukocyte chemotaxis, mutants was initially thought to be secondary to the cell- which occurs in contexts different from neuronal migration, differentiation phenotype [3]. suggesting a fundamental conservation of mechanisms guiding the migration of distinct types of somatic cells. In early 1999, results from three groups demonstrated independently that Slit functioned as an extracellular cue Addresses to guide axon pathfinding [4–6], to promote axon branching Department of Anatomy and Neurobiology, and *Departments of [7], and to control neuronal migration [8]. The functional Pediatrics and Molecular Biology and Pharmacology, Box 8108, roles of Slit in axon guidance and neuronal migration were Washington University School of Medicine, 660 S Euclid Avenue St Louis, soon supported by other studies in Drosophila [9] and in Missouri 63110, USA *e-mail: [email protected] vertebrates [10–14]. -
Mouse SLIT2 ELISA Kit (ARG82522)
Product datasheet [email protected] ARG82522 Package: 96 wells Mouse SLIT2 ELISA Kit Store at: 4°C Component Cat. No. Component Name Package Temp ARG82522-001 Antibody-coated 8 X 12 strips 4°C. Unused strips microplate should be sealed tightly in the air-tight pouch. ARG82522-002 Standard 2 X 10 ng/vial 4°C ARG82522-003 Standard/Sample 30 ml (Ready to use) 4°C diluent ARG82522-004 Antibody conjugate 1 vial (100 µl) 4°C concentrate (100X) ARG82522-005 Antibody diluent 12 ml (Ready to use) 4°C buffer ARG82522-006 HRP-Streptavidin 1 vial (100 µl) 4°C concentrate (100X) ARG82522-007 HRP-Streptavidin 12 ml (Ready to use) 4°C diluent buffer ARG82522-008 25X Wash buffer 20 ml 4°C ARG82522-009 TMB substrate 10 ml (Ready to use) 4°C (Protect from light) ARG82522-010 STOP solution 10 ml (Ready to use) 4°C ARG82522-011 Plate sealer 4 strips Room temperature Summary Product Description ARG82522 Mouse SLIT2 ELISA Kit is an Enzyme Immunoassay kit for the quantification of Mouse SLIT2 in serum, plasma (EDTA, heparin) and cell culture supernatants. Tested Reactivity Ms Tested Application ELISA Target Name SLIT2 Conjugation HRP Conjugation Note Substrate: TMB and read at 450 nm. Sensitivity 78 pg/ml Sample Type Serum, plasma (EDTA, heparin) and cell culture supernatants. Standard Range 156 - 10000 pg/ml Sample Volume 100 µl Precision Intra-Assay CV: 5.3% Inter-Assay CV: 6.9% www.arigobio.com 1/3 Alternate Names Slit-2; Slit homolog 2 protein; SLIL3 Application Instructions Assay Time ~ 5 hours Properties Form 96 well Storage instruction Store the kit at 2-8°C. -
KIAA0319 and ROBO1: Evidence on Association with Reading and Pleiotropic Effects on Language and Mathematics Abilities in Developmental Dyslexia
Journal of Human Genetics (2014) 59, 189–197 & 2014 The Japan Society of Human Genetics All rights reserved 1434-5161/14 www.nature.com/jhg ORIGINAL ARTICLE KIAA0319 and ROBO1: evidence on association with reading and pleiotropic effects on language and mathematics abilities in developmental dyslexia Sara Mascheretti1, Valentina Riva1, Roberto Giorda2, Silvana Beri2, Lara Francesca Emilia Lanzoni1, Maria Rosaria Cellino3 and Cecilia Marino4,5 Substantial heritability has been reported for developmental dyslexia (DD), and KIAA0319 and ROBO1 appear as more than plausible candidate susceptibility genes for this developmental disorder. Converging evidence indicates that developmental difficulties in oral language and mathematics can predate or co-occur with DD, and substantial genetic correlations have been found between these abilities and reading traits. In this study, we explored the role of eight single-nucleotide polymorphisms spanning within KIAA0319 and ROBO1 genes, and DD as a dichotomic trait, related neuropsychological phenotypes and comorbid language and mathematical (dis)abilities in a large cohort of 493 Italian nuclear families ascertained through a proband with a diagnosis of DD. Marker-trait association was analyzed by implementing a general test of family-based association for quantitative traits (that is, the Quantitative Transmission Disequilibrium Test, version 2.5.1). By providing evidence for significant association with mathematics skills, our data add further result in support of ROBO1 contributing to the deficits in -
Datasheet: VPA00168 Product Details
Datasheet: VPA00168 Description: RABBIT ANTI ROBO1 Specificity: ROBO1 Format: Purified Product Type: PrecisionAb™ Polyclonal Isotype: Polyclonal IgG Quantity: 100 µl Product Details Applications This product has been reported to work in the following applications. This information is derived from testing within our laboratories, peer-reviewed publications or personal communications from the originators. Please refer to references indicated for further information. For general protocol recommendations, please visit www.bio-rad-antibodies.com/protocols. Yes No Not Determined Suggested Dilution Western Blotting 1/1000 PrecisionAb antibodies have been extensively validated for the western blot application. The antibody has been validated at the suggested dilution. Where this product has not been tested for use in a particular technique this does not necessarily exclude its use in such procedures. Further optimization may be required dependant on sample type. Target Species Human Product Form Purified IgG - liquid Preparation Rabbit polyclonal antibody purified by affinity chromatography Buffer Solution Phosphate buffered saline Preservative 0.09% Sodium Azide (NaN ) Stabilisers 3 Immunogen Synthetic peptide corresponding to amino acids 1632-1644 of human ROBO1 External Database Links UniProt: Q2M1J3 Related reagents Specificity Rabbit anti Human ROBO1 antibody recognizes the ROBO1 protein ROBO1 is a member of the immunoglobulin gene superfamily and encodes an integral membrane protein that functions in axon guidance and neuronal precursor cell migration. This receptor is activated by SLIT-family proteins, resulting in a repulsive effect on glioma cell guidance in the developing brain. A related gene is located at an adjacent region on chromosome 3. Multiple transcript variants encoding different isoforms have been found for ROBO1 (provided by RefSeq, Page 1 of 2 Mar 2009). -
SLIT2/ROBO Signaling in Tumor-Associated Microglia/Macrophages Drives Glioblastoma Immunosuppression and Vascular Dysmorphia
SLIT2/ROBO signaling in tumor-associated microglia/macrophages drives glioblastoma immunosuppression and vascular dysmorphia Luiz H. Geraldo, … , Anne Eichmann, Thomas Mathivet J Clin Invest. 2021. https://doi.org/10.1172/JCI141083. Research In-Press Preview Oncology Vascular biology Graphical abstract Find the latest version: https://jci.me/141083/pdf 1 SLIT2/ROBO signaling in tumor-associated microglia/macrophages drives 2 glioblastoma immunosuppression and vascular dysmorphia 3 Luiz Henrique Geraldo1,2, Yunling Xu1, Laurent Jacob1, Laurence Pibouin Fragner1, 4 Rohit Rao3, Nawal Maissa1, Maïté Verreault4, Nolwenn Lemaire4, Camille Knosp1, 5 Corinne Lesaffre1, Thomas Daubon5,6, Joost DeJaegher7,8, Lien Solie7,8, Justine 6 Rudewicz5,6, Thomas Viel1, Bertrand Tavitian1, Steven De Vleeschouwer7,8, Marc 7 Sanson4,9, Andreas Bikfalvi5,6, Ahmed Idbaih4, Q. Richard Lu3, Flavia Regina Souza 8 Lima2, Jean-Leon Thomas4.10, Anne Eichmann1,11,12,*,# and Thomas Mathivet1,*,#. 9 10 1 Université de Paris, PARCC, INSERM, F-75015 Paris, France. 11 2 Biomedical Sciences Institute, Federal University of Rio de Janeiro, Brazil. 12 3 Brain Tumor Center, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 13 4 Sorbonne Université, Inserm U1127, CNRS UMR 7225, Institut du Cerveau, ICM, AP- 14 HP, Hôpitaux Universitaires La Pitié Salpêtrière - Charles Foix, Service de Neurologie 15 2-Mazarin, F-75013, Paris, France. 16 5 Inserm U1029, 6 Université de Bordeaux, F-33170 Pessac, France. 17 7 Department of Neurosciences, 8 Department of Neurosurgery, UZ -
Changes in SLIT2 Expression Are Associated with the Migration of Human Ovarian Clear Cell Carcinoma Cells
ONCOLOGY LETTERS 22: 551, 2021 Changes in SLIT2 expression are associated with the migration of human ovarian clear cell carcinoma cells CUEI‑JYUAN LIN1*, WAY‑REN HUANG2*, CHIA‑ZHEN WU3 and RUO‑CHIA TSENG3 1Department of Laboratory Medicine, Keelung Chang Gung Memorial Hospital, Keelung 20401; 2GLORIA Operation Center, National Tsing Hua University, Hsinchu 30013; 3Department of Molecular Biology and Human Genetics, Tzu Chi University, Hualien 97004, Taiwan, R.O.C. Received January 8, 2021; Accepted May 5, 2021 DOI: 10.3892/ol.2021.12812 Abstract. Ovarian clear cell carcinoma (OCCC) is characterized rate of ~9% in Taiwan and various other areas of the world (1,2). by a poor survival of patients, which is mainly due to metastasis EOC has several subtypes with different origins, multiple and treatment failure. Slit guidance ligand 2 (SLIT2), a secreted molecular characteristics and a range of outcomes (3). EOC protein, has been reported to modulate the migration of neural consists of five histological subtypes, namely serous, mucinous, cells and human cancer cells. However, the effect of changes in clear cell, endometrioid and transitional cell/Brenner tumor SLIT2 expression on the regulation of cell migration in OCCC subtypes (4). Ovarian clear cell carcinoma (OCCC) is a distinct remains unknown. The present study examined alterations in type of ovarian cancer, and is associated with both a poor SLIT2 expression using OCCC cell models, including low‑ and survival and resistance to platinum‑based chemotherapy (3). high‑mobility SKOV3 cells, as well as OCCC tissues. DNA OCCC is the second most common EOC subtype in Taiwan methylation analysis suggested that promoter hypermethylation and Japan (2), whereas it ranks fourth in North America (5). -
Supplementary Information – Postema Et Al., the Genetics of Situs Inversus Totalis Without Primary Ciliary Dyskinesia
1 Supplementary information – Postema et al., The genetics of situs inversus totalis without primary ciliary dyskinesia Table of Contents: Supplementary Methods 2 Supplementary Results 5 Supplementary References 6 Supplementary Tables and Figures Table S1. Subject characteristics 9 Table S2. Inbreeding coefficients per subject 10 Figure S1. Multidimensional scaling to capture overall genomic diversity 11 among the 30 study samples Table S3. Significantly enriched gene-sets under a recessive mutation model 12 Table S4. Broader list of candidate genes, and the sources that led to their 13 inclusion Table S5. Potential recessive and X-linked mutations in the unsolved cases 15 Table S6. Potential mutations in the unsolved cases, dominant model 22 2 1.0 Supplementary Methods 1.1 Participants Fifteen people with radiologically documented SIT, including nine without PCD and six with Kartagener syndrome, and 15 healthy controls matched for age, sex, education and handedness, were recruited from Ghent University Hospital and Middelheim Hospital Antwerp. Details about the recruitment and selection procedure have been described elsewhere (1). Briefly, among the 15 people with radiologically documented SIT, those who had symptoms reminiscent of PCD, or who were formally diagnosed with PCD according to their medical record, were categorized as having Kartagener syndrome. Those who had no reported symptoms or formal diagnosis of PCD were assigned to the non-PCD SIT group. Handedness was assessed using the Edinburgh Handedness Inventory (EHI) (2). Tables 1 and S1 give overviews of the participants and their characteristics. Note that one non-PCD SIT subject reported being forced to switch from left- to right-handedness in childhood, in which case five out of nine of the non-PCD SIT cases are naturally left-handed (Table 1, Table S1).