Membrane Type 1 Matrix Metalloproteinase Promotes LDL Receptor Shedding and Accelerates the Development of Atherosclerosis
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Endothelial Glycocalyx-Mediated Intercellular Interactions: Mechanisms and Implications for Health and Disease
ENDOTHELIAL GLYCOCALYX-MEDIATED INTERCELLULAR INTERACTIONS: MECHANISMS AND IMPLICATIONS FOR HEALTH AND DISEASE A Dissertation Presented By Solomon Arko Mensah To The Department of Bioengineering in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the field of Bioengineering Northeastern University Boston, Massachusetts October 2019 Northeastern University Graduate School of Engineering Dissertation Signature Page Dissertation Title: Endothelial Glycocalyx-Mediated Intercellular Interactions: Mechanisms and Implications for Health and Disease Author: Solomon Arko Mensah NUID: 001753218 Department: Bioengineering Approved for Dissertation Requirement for the Doctor of Philosophy Degree Dissertation Advisor Dr. Eno. E. Ebong, Associate Professor Print Name, Title Signature Date Dissertation Committee Member Dr. Arthur J. Coury, Distinguished Professor Print Name, Title Signature Date Dissertation Committee Member Dr. Rebecca L. Carrier, Professor Print Name, Title Signature Date Dissertation Committee Member Dr. James Monaghan, Associate Professor Print Name, Title Signature Date Department Chair Dr. Lee Makowski, Professor and Chair Print Name, Title Signature Date Associate Dean of the Graduate School Dr. Waleed Meleis, Interim Associate Dean Associate Dean for Graduate Education Signature Date ii ACKNOWLEDGEMENTS First of all, I will like to thank God for how far he has brought me. I am grateful to you, God, for sending your son JESUS CHRIST to die for my sins. I do not take this substitutionary death of CHRIST for granted, and I am forever indebted to you for my salvation. I would like to express my sincerest gratitude to my PI, Dr. Eno Essien Ebong, for the mentorship, leadership and unwaivering guidance through my academic career and personal life. Dr Ebong, you taught me everything I know about scientific research and communication and I will not be where I am today if not for your leadership. -
Dysfunctional Mechanotransduction Through the YAP/TAZ/Hippo Pathway As a Feature of Chronic Disease
cells Review Dysfunctional Mechanotransduction through the YAP/TAZ/Hippo Pathway as a Feature of Chronic Disease 1, 2, 2,3, 4 Mathias Cobbaut y, Simge Karagil y, Lucrezia Bruno y, Maria Del Carmen Diaz de la Loza , Francesca E Mackenzie 3, Michael Stolinski 2 and Ahmed Elbediwy 2,* 1 Protein Phosphorylation Lab, Francis Crick Institute, London NW1 1AT, UK; [email protected] 2 Department of Biomolecular Sciences, Kingston University, Kingston-upon-Thames KT1 2EE, UK; [email protected] (S.K.); [email protected] (L.B.); [email protected] (M.S.) 3 Department of Chemical and Pharmaceutical Sciences, Kingston University, Kingston-upon-Thames KT1 2EE, UK; [email protected] 4 Epithelial Biology Lab, Francis Crick Institute, London NW1 1AT, UK; [email protected] * Correspondence: [email protected] These authors contribute equally to this work. y Received: 30 November 2019; Accepted: 4 January 2020; Published: 8 January 2020 Abstract: In order to ascertain their external environment, cells and tissues have the capability to sense and process a variety of stresses, including stretching and compression forces. These mechanical forces, as experienced by cells and tissues, are then converted into biochemical signals within the cell, leading to a number of cellular mechanisms being activated, including proliferation, differentiation and migration. If the conversion of mechanical cues into biochemical signals is perturbed in any way, then this can be potentially implicated in chronic disease development and processes such as neurological disorders, cancer and obesity. This review will focus on how the interplay between mechanotransduction, cellular structure, metabolism and signalling cascades led by the Hippo-YAP/TAZ axis can lead to a number of chronic diseases and suggest how we can target various pathways in order to design therapeutic targets for these debilitating diseases and conditions. -
Discovery and Optimization of Selective Inhibitors of Meprin Α (Part II)
pharmaceuticals Article Discovery and Optimization of Selective Inhibitors of Meprin α (Part II) Chao Wang 1,2, Juan Diez 3, Hajeung Park 1, Christoph Becker-Pauly 4 , Gregg B. Fields 5 , Timothy P. Spicer 1,6, Louis D. Scampavia 1,6, Dmitriy Minond 2,7 and Thomas D. Bannister 1,2,* 1 Department of Molecular Medicine, Scripps Research, Jupiter, FL 33458, USA; [email protected] (C.W.); [email protected] (H.P.); [email protected] (T.P.S.); [email protected] (L.D.S.) 2 Department of Chemistry, Scripps Research, Jupiter, FL 33458, USA; [email protected] 3 Rumbaugh-Goodwin Institute for Cancer Research, Nova Southeastern University, 3321 College Avenue, CCR r.605, Fort Lauderdale, FL 33314, USA; [email protected] 4 The Scripps Research Molecular Screening Center, Scripps Research, Jupiter, FL 33458, USA; [email protected] 5 Unit for Degradomics of the Protease Web, Institute of Biochemistry, University of Kiel, Rudolf-Höber-Str.1, 24118 Kiel, Germany; fi[email protected] 6 Department of Chemistry & Biochemistry and I-HEALTH, Florida Atlantic University, 5353 Parkside Drive, Jupiter, FL 33458, USA 7 Dr. Kiran C. Patel College of Allopathic Medicine, Nova Southeastern University, 3301 College Avenue, Fort Lauderdale, FL 33314, USA * Correspondence: [email protected] Abstract: Meprin α is a zinc metalloproteinase (metzincin) that has been implicated in multiple diseases, including fibrosis and cancers. It has proven difficult to find small molecules that are capable Citation: Wang, C.; Diez, J.; Park, H.; of selectively inhibiting meprin α, or its close relative meprin β, over numerous other metzincins Becker-Pauly, C.; Fields, G.B.; Spicer, which, if inhibited, would elicit unwanted effects. -
Molecular Markers of Serine Protease Evolution
The EMBO Journal Vol. 20 No. 12 pp. 3036±3045, 2001 Molecular markers of serine protease evolution Maxwell M.Krem and Enrico Di Cera1 ment and specialization of the catalytic architecture should correspond to signi®cant evolutionary transitions in the Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Box 8231, St Louis, history of protease clans. Evolutionary markers encoun- MO 63110-1093, USA tered in the sequences contributing to the catalytic apparatus would thus give an account of the history of 1Corresponding author e-mail: [email protected] an enzyme family or clan and provide for comparative analysis with other families and clans. Therefore, the use The evolutionary history of serine proteases can be of sequence markers associated with active site structure accounted for by highly conserved amino acids that generates a model for protease evolution with broad form crucial structural and chemical elements of applicability and potential for extension to other classes of the catalytic apparatus. These residues display non- enzymes. random dichotomies in either amino acid choice or The ®rst report of a sequence marker associated with serine codon usage and serve as discrete markers for active site chemistry was the observation that both AGY tracking changes in the active site environment and and TCN codons were used to encode active site serines in supporting structures. These markers categorize a variety of enzyme families (Brenner, 1988). Since serine proteases of the chymotrypsin-like, subtilisin- AGY®TCN interconversion is an uncommon event, it like and a/b-hydrolase fold clans according to phylo- was reasoned that enzymes within the same family genetic lineages, and indicate the relative ages and utilizing different active site codons belonged to different order of appearance of those lineages. -
An Endocytosis Pathway Initiated Through Neuropilin-1 and Regulated by Nutrient Availability
ARTICLE Received 18 Apr 2014 | Accepted 2 Aug 2014 | Published 3 Oct 2014 DOI: 10.1038/ncomms5904 An endocytosis pathway initiated through neuropilin-1 and regulated by nutrient availability Hong-Bo Pang1, Gary B. Braun1,2, Tomas Friman1,2, Pedro Aza-Blanc1, Manuel E. Ruidiaz1, Kazuki N. Sugahara1,3, Tambet Teesalu1,4 & Erkki Ruoslahti1,2 Neuropilins (NRPs) are trans-membrane receptors involved in axon guidance and vascular development. Many growth factors and other signalling molecules bind to NRPs through a carboxy (C)-terminal, basic sequence motif (C-end Rule or CendR motif). Peptides with this motif (CendR peptides) are taken up into cells by endocytosis. Tumour-homing CendR peptides penetrate through tumour tissue and have shown utility in enhancing drug delivery into tumours. Here we show, using RNAi screening and subsequent validation studies, that NRP1-mediated endocytosis of CendR peptides is distinct from known endocytic pathways. Ultrastructurally, CendR endocytosis resembles macropinocytosis, but is mechanistically different. We also show that nutrient-sensing networks such as mTOR signalling regulate CendR endocytosis and subsequent intercellular transport of CendR cargo, both of which are stimulated by nutrient depletion. As CendR is a bulk transport pathway, our results suggest a role for it in nutrient transport; CendR-enhanced drug delivery then makes use of this natural pathway. 1 Cancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037, USA. 2 Center for Nanomedicine, Department of Cell, Molecular and Developmental Biology, University of California Santa Barbara, Santa Barbara, California 93106-9610, USA. 3 Department of Surgery, Columbia University, College of Physicians and Surgeons, New York, New York 10032, USA. -
Transmembrane/Cytoplasmic, Rather Than Catalytic, Domains of Mmp14
RESEARCH ARTICLE 343 Development 140, 343-352 (2013) doi:10.1242/dev.084236 © 2013. Published by The Company of Biologists Ltd Transmembrane/cytoplasmic, rather than catalytic, domains of Mmp14 signal to MAPK activation and mammary branching morphogenesis via binding to integrin 1 Hidetoshi Mori1,*, Alvin T. Lo1, Jamie L. Inman1, Jordi Alcaraz1,2, Cyrus M. Ghajar1, Joni D. Mott1, Celeste M. Nelson1,3, Connie S. Chen1, Hui Zhang1, Jamie L. Bascom1, Motoharu Seiki4 and Mina J. Bissell1,* SUMMARY Epithelial cell invasion through the extracellular matrix (ECM) is a crucial step in branching morphogenesis. The mechanisms by which the mammary epithelium integrates cues from the ECM with intracellular signaling in order to coordinate invasion through the stroma to make the mammary tree are poorly understood. Because the cell membrane-bound matrix metalloproteinase Mmp14 is known to play a key role in cancer cell invasion, we hypothesized that it could also be centrally involved in integrating signals for mammary epithelial cells (MECs) to navigate the collagen 1 (CL-1)-rich stroma of the mammary gland. Expression studies in nulliparous mice that carry a NLS-lacZ transgene downstream of the Mmp14 promoter revealed that Mmp14 is expressed in MECs at the tips of the branches. Using both mammary organoids and 3D organotypic cultures, we show that MMP activity is necessary for invasion through dense CL-1 (3 mg/ml) gels, but dispensable for MEC branching in sparse CL-1 (1 mg/ml) gels. Surprisingly, however, Mmp14 without its catalytic activity was still necessary for branching. Silencing Mmp14 prevented cell invasion through CL-1 and disrupted branching altogether; it also reduced integrin 1 (Itgb1) levels and attenuated MAPK signaling, disrupting Itgb1- dependent invasion/branching within CL-1 gels. -
Exploring the Extracellular Regulation of the Tumor Angiogenic Interaction
bioRxiv preprint doi: https://doi.org/10.1101/581884; this version posted March 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Exploring the extracellular regulation of the tumor angiogenic in- teraction network using a systems biology model Ding Li1 and Stacey D. Finley2 1Department of Biomedical Engineering, University of Southern California, Los Angeles, CA, USA 2Department of Biomedical Engineering; Mork Family Department of Chemical Engineering and Materials Sci- ence; Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA ABSTRACT angiogenic signaling to oppose angiogenesis4,5. Considering Tumor angiogenesis is regulated by pro- and anti-angiogenic factors. the importance of angiogenesis in tumor development, anti- Anti-angiogenic agents target the interconnected network of angio- angiogenic therapies are designed to target the signaling of genic factors to inhibit neovascularization, which subsequently im- angiogenic factors to inhibit neovascularization and tumor pedes tumor growth. Due to the complexity of this network, optimizing growth6. Single-agent anti-angiogenic therapies that target a anti-angiogenic cancer treatments requires detailed knowledge at a particular angiogenic factor in the network were the first angi- systems level. In this study, we constructed a tumor tissue-based ogenesis-inhibiting therapies studied. These include antibod- model to better understand how the angiogenic network is regulated ies or small molecules targeting pro-angiogenic factors7 and by opposing mediators at the extracellular level. We consider the net- peptide mimetics of anti-angiogenic factors8. -
Neuropilin-1
November 3, 2020 Edition 2020-11-03 *** Available on-line at https://www.cdc.gov/library/covid19 *** Neuropilin-1 The SARS-CoV-2 major spike protein (S) is cleaved by a host protease to create S1 and S2 functional polypeptides. The S1 polypeptide has a carboxy-terminal sequence that binds to host cell surface neuropilin-1 (NRP1) and neuropilin-2 (NRP2) receptors. NRP receptors facilitate viral entry for several viruses due to their abundance on cells that are exposed to the external environment – cells that paradoxically express low levels of angiotensin- converting enzyme-2 (ACE2), the known SARS-CoV-2 receptor. Here we present two articles that evaluated the potential for NRP1 to act as a co-receptor for SARS-CoV-2. PEER-REVIEWED Neuropilin-1 is a host factor for SARS-CoV-2 infection. Daly et al. Science (October 20, 2020). Key findings: • The S1 fragment of the cleaved SARS-CoV-2 spike protein binds to the cell surface receptor neuropilin-1 (NRP1). • SARS-CoV-2 utilizes NRP1 for cell entry as evidenced by decreased infectivity of cells in the presence of: o NRP1 deletion (p <0.0001) (Figure). o Three different anti-NRP1 monoclonal antibodies (p <0.001). o Selective NRP1 antagonist, EG00229 (p <0.01). Methods: Binding of the S1 fragment to NRP1 was assessed and ability of SARS-CoV-2 to use NRP1 to infect cells was measured in angiotensin-converting enzyme-2 (ACE-2)-expressing cell lines by knocking out NRP1 expression, blocking NRP1 with 3 different anti-NRP1 monoclonal antibodies, or using NRP1 small molecule antagonists. -
Microrna-320A Inhibits Tumor Invasion by Targeting Neuropilin 1 and Is Associated with Liver Metastasis in Colorectal Cancer
ONCOLOGY REPORTS 27: 685-694, 2012 microRNA-320a inhibits tumor invasion by targeting neuropilin 1 and is associated with liver metastasis in colorectal cancer YUJUN ZHANG1, XIANGJUN HE1, YULAN LIU1,2, YINGJIANG YE3, HUI ZHANG3, PEIYING HE1, QI ZHANG1, LINGYI DONG3, YUJING LIU1 and JIANQIANG DONG1 1Institute of Clinical Molecular Biology, and Departments of 2Gastroenterology and 3General Surgery, Peking University, People's Hospital, Beijing 100044, P.R. China Received September 13, 2011; Accepted October 26, 2011 DOI: 10.3892/or.2011.1561 Abstract. MicroRNAs (miRNAs) have been implicated Introduction in regulating diverse cellular pathways. Although there is emerging evidence that various miRNAs function as onco- Colorectal cancer (CRC) is the second most common cause genes or tumor suppressors in colorectal cancer (CRC), the role of cancer-related death worldwide (1). Approximately 50% of of miRNAs in mediating liver metastasis remains unexplored. patients diagnosed with CRC die as a result of complications The expression profile of miRNAs in liver metastasis and from distant metastases, which occur mainly in the liver. The primary CRC tissues was analyzed by miRNA microarrays occurrence of liver metastasis ranges from 20% in stage II to and verified by real-time polymerase chain reaction (PCR). 70% in stage IV CRC patients, according to the UICC stage In 62 CRC patients, the expression levels of miR-320a were guidelines. Of all patients who die of advanced colorectal determined by real-time PCR, and the effects on migration and cancer (ACRC), 60-70% display liver metastasis (2). Metastasis invasion of miR-320a were determined using a transwell assay. to the liver is the major cause of death in CRC patients (3). -
Self-Organization of Engineered Epithelial Tubules by Differential Cellular Motility
Self-organization of engineered epithelial tubules by differential cellular motility Hidetoshi Moria,1, Nikolce Gjorevskib,1, Jamie L. Inmana,1, Mina J. Bissella,2, and Celeste M. Nelsonb,2 aLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; and bDepartments of Chemical Engineering and Molecular Biology, Princeton University, Princeton, NJ 08544 Edited by Kenneth Yamada, National Institutes of Health, Bethesda, MD, and accepted by the Editorial Board July 16, 2009 (received for review February 4, 2009) Patterning of developing tissues arises from a number of mecha- also in many epithelial tumors, including those from breast, lung, nisms, including cell shape change, cell proliferation, and cell sorting and colon (17–19), and confers cancer cells with the pernicious from differential cohesion or tension. Here, we reveal that differences ability to degrade and penetrate the basement membrane and in cell motility can also lead to cell sorting within tissues. Using mosaic metastasize to distant sites (20–23). Intriguingly, cells at the invasive engineered mammary epithelial tubules, we found that cells sorted front of metastatic cohorts express the highest levels of MMP14 (24, depending on their expression level of the membrane-anchored 25). Understanding how the expression pattern of this protease is collagenase matrix metalloproteinase (MMP)-14. These rearrange- determined will likely yield insights into possible mechanisms of ments were independent of the catalytic activity of MMP14 but cancer progression and invasion. absolutely required the hemopexin domain. We describe a signaling Here we present evidence to suggest that cellular rearrange- cascade downstream of MMP14 through Rho kinase that allows cells ments generated by differential cellular motility determine the to sort within the model tissues. -
Two-Dimensional Signal Transduction During the Formation of Invadopodia
Malaysian Journal of Mathematical Sciences 13(2): 155164 (2019) MALAYSIAN JOURNAL OF MATHEMATICAL SCIENCES Journal homepage: http://einspem.upm.edu.my/journal Two-Dimensional Signal Transduction during the Formation of Invadopodia Noor Azhuan, N. A.1, Poignard, C.2, Suzuki, T.3, Shae, S.1, and Admon, M. A. ∗1 1Department of Mathematical Sciences, Universiti Teknologi Malaysia, Malaysia 2INRIA de Bordeaux-Sud Ouest, Team MONC, France 3Center for Mathematical Modeling and Data Science, Osaka University, Japan E-mail: [email protected] ∗ Corresponding author Received: 6 November 2018 Accepted: 7 April 2019 ABSTRACT Signal transduction is an important process associated with invadopodia formation which consequently leads to cancer cell invasion. In this study, a two-dimensional free boundary problem in a steady-case of signal trans- duction during the formation of invadopodia is investigated. The signal equation is represented by a Laplace equation with Dirichlet boundary condition. The plasma membrane is taken as zero level set function. The level set method is used to solve the complete model numerically. Our results showed that protrusions are developed on the membrane surface due to the presence of signal density inside the cell. Keywords: Invadopodia formation, Signal transduction, Free boundary problem and Level set method. Noor Azhuan,N. A. et. al 1. Introduction Normally, human cells grow and divide to form new cells as required by the body. Cells grow old or become damaged and die, and new cells take their place. However, this orderly process breaks down when a cancer cell formed through multiple mutation in an individual's normal cell key genes. -
A Dominant Negative Receptor for Specific
The Journal of Neuroscience, September 15, 1999, 19(18):7870–7880 A Dominant Negative Receptor for Specific Secreted Semaphorins Is Generated by Deleting an Extracellular Domain from Neuropilin-1 Michael J. Renzi, Leonard Feiner, Adam M. Koppel, and Jonathan A. Raper Department of Neurosciences, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6074 Neuropilins have recently been characterized as receptors for plasmic domain fails to act as a dominant negative receptor secreted semaphorins. Here, we report the generation of a component. These results suggest that neuropilin-1 is a nec- dominant negative form of neuropilin-1 by the deletion of one of essary component of receptor complexes for some, but not all, its extracellular domains. Expression of this variant in cultured secreted semaphorin family members. Overexpression of dom- primary sympathetic neurons blocks the paralysis of growth inant negative neuropilins should provide a powerful new cone motility normally induced by SEMA-3A (collapsin-1, method of blocking the functions of secreted semaphorins. semaphorin III, semaphorin D) and SEMA-3C (collapsin-3, Key words: semaphorin; collapsin; neuropilin-1; sympathetic semaphorin E) but not that induced by SEMA-3F (semaphorin neuron; growth cone guidance; growth cone collapse; domi- IV). A truncated form of neuropilin-1 that is missing its cyto- nant negative receptor The development of a functional nervous system requires that Giger et al., 1998a,b) and are likely to act as repellents that help axons navigate through a complex environment, sometimes over guide peripheral axons, particularly sympathetic axons, along long distances, to locate their correct targets. At the growing tips their appropriate trajectories.