Fast and Slow Machine Learning
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Sagemath and Sagemathcloud
Viviane Pons Ma^ıtrede conf´erence,Universit´eParis-Sud Orsay [email protected] { @PyViv SageMath and SageMathCloud Introduction SageMath SageMath is a free open source mathematics software I Created in 2005 by William Stein. I http://www.sagemath.org/ I Mission: Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 2 / 7 SageMath Source and language I the main language of Sage is python (but there are many other source languages: cython, C, C++, fortran) I the source is distributed under the GPL licence. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 3 / 7 SageMath Sage and libraries One of the original purpose of Sage was to put together the many existent open source mathematics software programs: Atlas, GAP, GMP, Linbox, Maxima, MPFR, PARI/GP, NetworkX, NTL, Numpy/Scipy, Singular, Symmetrica,... Sage is all-inclusive: it installs all those libraries and gives you a common python-based interface to work on them. On top of it is the python / cython Sage library it-self. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 4 / 7 SageMath Sage and libraries I You can use a library explicitly: sage: n = gap(20062006) sage: type(n) <c l a s s 'sage. interfaces .gap.GapElement'> sage: n.Factors() [ 2, 17, 59, 73, 137 ] I But also, many of Sage computation are done through those libraries without necessarily telling you: sage: G = PermutationGroup([[(1,2,3),(4,5)],[(3,4)]]) sage : G . g a p () Group( [ (3,4), (1,2,3)(4,5) ] ) Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 5 / 7 SageMath Development model Development model I Sage is developed by researchers for researchers: the original philosophy is to develop what you need for your research and share it with the community. -
Data Mining – Intro
Data warehouse& Data Mining UNIT-3 Syllabus • UNIT 3 • Classification: Introduction, decision tree, tree induction algorithm – split algorithm based on information theory, split algorithm based on Gini index; naïve Bayes method; estimating predictive accuracy of classification method; classification software, software for association rule mining; case study; KDD Insurance Risk Assessment What is Data Mining? • Data Mining is: (1) The efficient discovery of previously unknown, valid, potentially useful, understandable patterns in large datasets (2) Data mining is the analysis step of the "knowledge discovery in databases" process, or KDD (2) The analysis of (often large) observational data sets to find unsuspected relationships and to summarize the data in novel ways that are both understandable and useful to the data owner Knowledge Discovery Examples of Large Datasets • Government: IRS, NGA, … • Large corporations • WALMART: 20M transactions per day • MOBIL: 100 TB geological databases • AT&T 300 M calls per day • Credit card companies • Scientific • NASA, EOS project: 50 GB per hour • Environmental datasets KDD The Knowledge Discovery in Databases (KDD) process is commonly defined with the stages: (1) Selection (2) Pre-processing (3) Transformation (4) Data Mining (5) Interpretation/Evaluation Data Mining Methods 1. Decision Tree Classifiers: Used for modeling, classification 2. Association Rules: Used to find associations between sets of attributes 3. Sequential patterns: Used to find temporal associations in time series 4. Hierarchical -
Tuto Documentation Release 0.1.0
Tuto Documentation Release 0.1.0 DevOps people 2020-05-09 09H16 CONTENTS 1 Documentation news 3 1.1 Documentation news 2020........................................3 1.1.1 New features of sphinx.ext.autodoc (typing) in sphinx 2.4.0 (2020-02-09)..........3 1.1.2 Hypermodern Python Chapter 5: Documentation (2020-01-29) by https://twitter.com/cjolowicz/..................................3 1.2 Documentation news 2018........................................4 1.2.1 Pratical sphinx (2018-05-12, pycon2018)...........................4 1.2.2 Markdown Descriptions on PyPI (2018-03-16)........................4 1.2.3 Bringing interactive examples to MDN.............................5 1.3 Documentation news 2017........................................5 1.3.1 Autodoc-style extraction into Sphinx for your JS project...................5 1.4 Documentation news 2016........................................5 1.4.1 La documentation linux utilise sphinx.............................5 2 Documentation Advices 7 2.1 You are what you document (Monday, May 5, 2014)..........................8 2.2 Rédaction technique...........................................8 2.2.1 Libérez vos informations de leurs silos.............................8 2.2.2 Intégrer la documentation aux processus de développement..................8 2.3 13 Things People Hate about Your Open Source Docs.........................9 2.4 Beautiful docs.............................................. 10 2.5 Designing Great API Docs (11 Jan 2012)................................ 10 2.6 Docness................................................. -
Software Orchestration of Instruction Level Parallelism on Tiled Processor Architectures
Software Orchestration of Instruction Level Parallelism on Tiled Processor Architectures by Walter Lee B.S., Computer Science Massachusetts Institute of Technology, 1995 M.Eng., Electrical Engineering and Computer Science Massachusetts Institute of Technology, 1995 Submitted to the Department of Electrical Engineering and Computer Science in partial fulfillment of the requirements for the degree of MiASSACHUSETTS INST IJUE DOCTOR OF PHILOSOPHY OF TECHNOLOGY at the OCT 2 12005 MASSACHUSETTS INSTITUTE OF TECHNOLOGY LIBRARIES May 2005 @ 2005 Massachusetts Institute of Technology. All rights reserved. Signature of Author: Department of Electrical Engineering and Computer Science A May 16, 2005 Certified by: Anant Agarwal Professr of Computer Science and Engineering Thesis Supervisor Certified by: Saman Amarasinghe Associat of Computer Science and Engineering Thesis Supervisor Accepted by: Arthur C. Smith Chairman, Departmental Graduate Committee BARKER ovlv ". Software Orchestration of Instruction Level Parallelism on Tiled Processor Architectures by Walter Lee Submitted to the Department of Electrical Engineering and Computer Science on May 16, 2005 in partial fulfillment of the requirements for the Degree of Doctor of Philosophy in Electrical Engineering and Computer Science ABSTRACT Projection from silicon technology is that while transistor budget will continue to blossom according to Moore's law, latency from global wires will severely limit the ability to scale centralized structures at high frequencies. A tiled processor architecture (TPA) eliminates long wires from its design by distributing its resources over a pipelined interconnect. By exposing the spatial distribution of these resources to the compiler, a TPA allows the compiler to optimize for locality, thus minimizing the distance that data needs to travel to reach the consuming computation. -
Emerging Technologies Multi/Parallel Processing
Emerging Technologies Multi/Parallel Processing Mary C. Kulas New Computing Structures Strategic Relations Group December 1987 For Internal Use Only Copyright @ 1987 by Digital Equipment Corporation. Printed in U.S.A. The information contained herein is confidential and proprietary. It is the property of Digital Equipment Corporation and shall not be reproduced or' copied in whole or in part without written permission. This is an unpublished work protected under the Federal copyright laws. The following are trademarks of Digital Equipment Corporation, Maynard, MA 01754. DECpage LN03 This report was produced by Educational Services with DECpage and the LN03 laser printer. Contents Acknowledgments. 1 Abstract. .. 3 Executive Summary. .. 5 I. Analysis . .. 7 A. The Players . .. 9 1. Number and Status . .. 9 2. Funding. .. 10 3. Strategic Alliances. .. 11 4. Sales. .. 13 a. Revenue/Units Installed . .. 13 h. European Sales. .. 14 B. The Product. .. 15 1. CPUs. .. 15 2. Chip . .. 15 3. Bus. .. 15 4. Vector Processing . .. 16 5. Operating System . .. 16 6. Languages. .. 17 7. Third-Party Applications . .. 18 8. Pricing. .. 18 C. ~BM and Other Major Computer Companies. .. 19 D. Why Success? Why Failure? . .. 21 E. Future Directions. .. 25 II. Company/Product Profiles. .. 27 A. Multi/Parallel Processors . .. 29 1. Alliant . .. 31 2. Astronautics. .. 35 3. Concurrent . .. 37 4. Cydrome. .. 41 5. Eastman Kodak. .. 45 6. Elxsi . .. 47 Contents iii 7. Encore ............... 51 8. Flexible . ... 55 9. Floating Point Systems - M64line ................... 59 10. International Parallel ........................... 61 11. Loral .................................... 63 12. Masscomp ................................. 65 13. Meiko .................................... 67 14. Multiflow. ~ ................................ 69 15. Sequent................................... 71 B. Massively Parallel . 75 1. Ametek.................................... 77 2. Bolt Beranek & Newman Advanced Computers ........... -
An Introduction to Numpy and Scipy
An introduction to Numpy and Scipy Table of contents Table of contents ............................................................................................................................ 1 Overview ......................................................................................................................................... 2 Installation ...................................................................................................................................... 2 Other resources .............................................................................................................................. 2 Importing the NumPy module ........................................................................................................ 2 Arrays .............................................................................................................................................. 3 Other ways to create arrays............................................................................................................ 7 Array mathematics .......................................................................................................................... 8 Array iteration ............................................................................................................................... 10 Basic array operations .................................................................................................................. 11 Comparison operators and value testing .................................................................................... -
Exploiting Choice: Instruction Fetch and Issue on an Implementable Simultaneous Multithreading Processor
Exploiting Choice: Instruction Fetch and Issue on an Implementable Simultaneous Multithreading Processor ¡ Dean M. Tullsen , Susan J. Eggers , Joel S. Emer , Henry M. Levy , ¡ Jack L. Lo , and Rebecca L. Stamm ¡ Dept of Computer Science and Engineering Digital Equipment Corporation University of Washington HLO2-3/J3 Box 352350 77 Reed Road Seattle, WA 98195-2350 Hudson, MA 01749 Abstract an SMT processor to achieve signi®cantly higher throughput than either a wide superscalar or a multithreaded processor. That paper Simultaneous multithreading is a technique that permits multiple also demonstrated the advantages of simultaneous multithreading independent threads to issue multiple instructions each cycle. In over multiple processors on a single chip, due to SMT's ability to previous work we demonstrated the performance potential of si- dynamically assign execution resources where needed each cycle. multaneous multithreading, based on a somewhat idealized model. Those results showed SMT's potential based on a somewhat ide- In this paper we show that the throughput gains from simultaneous alized model. This paper extends that work in four signi®cant ways. multithreading can be achieved without extensive changes to a con- First, we demonstrate that the throughput gains of simultaneous mul- ventional wide-issue superscalar, either in hardware structures or tithreading are possible without extensive changesto a conventional, sizes. We present an architecture for simultaneous multithreading wide-issue superscalar processor. We propose an architecture that that achieves three goals: (1) it minimizes the architectural impact is more comprehensive, realistic, and heavily leveraged off existing on the conventional superscalar design, (2) it has minimal perfor- superscalar technology. -
Bioimage Analysis Fundamentals in Python with Scikit-Image, Napari, & Friends
Bioimage analysis fundamentals in Python with scikit-image, napari, & friends Tutors: Juan Nunez-Iglesias ([email protected]) Nicholas Sofroniew ([email protected]) Session 1: 2020-11-30 17:30 UTC – 2020-11-30 22:00 UTC Session 2: 2020-12-01 07:30 UTC – 2020-12-01 12:00 UTC ## Information about the tutors Juan Nunez-Iglesias is a Senior Research Fellow at Monash Micro Imaging, Monash University, Australia. His work on image segmentation in connectomics led him to contribute to the scikit-image library, of which he is now a core maintainer. He has since co-authored the book Elegant SciPy and co-created napari, an n-dimensional image viewer in Python. He has taught image analysis and scientific Python at conferences, university courses, summer schools, and at private companies. Nicholas Sofroniew leads the Imaging Tech Team at the Chan Zuckerberg Initiative. There he's focused on building tools that provide easy access to reproducible, quantitative bioimage analysis for the research community. He has a background in mathematics and systems neuroscience research, with a focus on microscopy and image analysis, and co-created napari, an n-dimensional image viewer in Python. ## Title and abstract of the tutorial. Title: **Bioimage analysis fundamentals in Python** **Abstract** The use of Python in science has exploded in the past decade, driven by excellent scientific computing libraries such as NumPy, SciPy, and pandas. In this tutorial, we will explore some of the most critical Python libraries for scientific computing on images, by walking through fundamental bioimage analysis applications of linear filtering (aka convolutions), segmentation, and object measurement, leveraging the napari viewer for interactive visualisation and processing. -
Pandas: Powerful Python Data Analysis Toolkit Release 0.25.3
pandas: powerful Python data analysis toolkit Release 0.25.3 Wes McKinney& PyData Development Team Nov 02, 2019 CONTENTS i ii pandas: powerful Python data analysis toolkit, Release 0.25.3 Date: Nov 02, 2019 Version: 0.25.3 Download documentation: PDF Version | Zipped HTML Useful links: Binary Installers | Source Repository | Issues & Ideas | Q&A Support | Mailing List pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. See the overview for more detail about whats in the library. CONTENTS 1 pandas: powerful Python data analysis toolkit, Release 0.25.3 2 CONTENTS CHAPTER ONE WHATS NEW IN 0.25.2 (OCTOBER 15, 2019) These are the changes in pandas 0.25.2. See release for a full changelog including other versions of pandas. Note: Pandas 0.25.2 adds compatibility for Python 3.8 (GH28147). 1.1 Bug fixes 1.1.1 Indexing • Fix regression in DataFrame.reindex() not following the limit argument (GH28631). • Fix regression in RangeIndex.get_indexer() for decreasing RangeIndex where target values may be improperly identified as missing/present (GH28678) 1.1.2 I/O • Fix regression in notebook display where <th> tags were missing for DataFrame.index values (GH28204). • Regression in to_csv() where writing a Series or DataFrame indexed by an IntervalIndex would incorrectly raise a TypeError (GH28210) • Fix to_csv() with ExtensionArray with list-like values (GH28840). 1.1.3 Groupby/resample/rolling • Bug incorrectly raising an IndexError when passing a list of quantiles to pandas.core.groupby. DataFrameGroupBy.quantile() (GH28113). -
Scipy and Numpy
www.it-ebooks.info SciPy and NumPy Eli Bressert Beijing • Cambridge • Farnham • Koln¨ • Sebastopol • Tokyo www.it-ebooks.info 9781449305468_text.pdf 1 10/31/12 2:35 PM SciPy and NumPy by Eli Bressert Copyright © 2013 Eli Bressert. All rights reserved. Printed in the United States of America. Published by O’Reilly Media, Inc., 1005 Gravenstein Highway North, Sebastopol, CA 95472. O’Reilly books may be purchased for educational, business, or sales promotional use. Online editions are also available for most titles (http://my.safaribooksonline.com). For more information, contact our corporate/institutional sales department: (800) 998-9938 or [email protected]. Interior Designer: David Futato Project Manager: Paul C. Anagnostopoulos Cover Designer: Randy Comer Copyeditor: MaryEllen N. Oliver Editors: Rachel Roumeliotis, Proofreader: Richard Camp Meghan Blanchette Illustrators: EliBressert,LaurelMuller Production Editor: Holly Bauer November 2012: First edition Revision History for the First Edition: 2012-10-31 First release See http://oreilly.com/catalog/errata.csp?isbn=0636920020219 for release details. Nutshell Handbook, the Nutshell Handbook logo, and the O’Reilly logo are registered trademarks of O’Reilly Media, Inc. SciPy and NumPy, the image of a three-spined stickleback, and related trade dress are trademarks of O’Reilly Media, Inc. Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and O’Reilly Media, Inc., was aware of a trademark claim, the designations have been printed in caps or initial caps. While every precaution has been taken in the preparation of this book, the publisher and authors assume no responsibility for errors or omissions, or for damages resulting from the use of the information contained herein. -
Frequent Item Set Mining Using INC MINE in Massive Online Analysis Frame Work
Available online at www.sciencedirect.com ScienceDirect Procedia Computer Science 45 ( 2015 ) 133 – 142 International Conference on Advanced Computing Technologies and Applications (ICACTA- 2015) Frequent Item set Mining using INC_MINE in Massive Online Analysis Frame work Prof.Dr.P.K.Srimania, Mrs. Malini M. Patilb* aFormer Chairman and Director, R & D, Bangalore University, Karnataka, India bAssistant Professor , Dept of ISE , J.S.S. Academy of Technical Education, Bangalore-560060, Karnataka, India Research Scholar, Bharthiar University, Coimbatore, Tamilnadu Abstract Frequent Pattern Mining is one of the major data mining techniques, which is exhaustively studied in the past decade. The technological advancements have resulted in huge data generation, having increased rate of data distribution. The generated data is called as a 'data stream'. Data streams can be mined only by using sophisticated techniques. The paper aims at carrying out frequent pattern mining on data streams. Stream mining has great challenges due to high memory usage and computational costs. Massive online analysis frame work is a software environment used to perform frequent pattern mining using INC_MINE algorithm. The algorithm uses the method of closed frequent mining. The data sets used in the analysis are Electricity data set and Airline data set. The authors also generated their own data set, OUR-GENERATOR for the purpose of analysis and the results are found interesting. In the experiments five samples of instance sizes (10000, 15000, 25000, 35000, 50000) are used with varying minimum support and window sizes for determining frequent closed itemsets and semi frequent closed itemsets respectively. The present work establishes that association rule mining could be performed even in the case of data stream mining by INC_MINE algorithm by generating closed frequent itemsets which is first of its kind in the literature. -
Performance Analysis of Hoeffding Trees in Data Streams by Using Massive Online Analysis Framework
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ePrints@Bangalore University Int. J. Data Mining, Modelling and Management, Vol. 7, No. 4, 2015 293 Performance analysis of Hoeffding trees in data streams by using massive online analysis framework P.K. Srimani R & D Division, Bangalore University Jnana Bharathi, Mysore Road, Bangalore-560056, Karnataka, India Email: [email protected] Malini M. Patil* Department of Information Science and Engineering, J.S.S. Academy of Technical Education, Uttaralli-Kengeri Main Road, Mylasandra, Bangalore-560060, Karnataka, India Email: [email protected] *Corresponding author Abstract: Present work is mainly concerned with the understanding of the problem of classification from the data stream perspective on evolving streams using massive online analysis framework with regard to different Hoeffding trees. Advancement of the technology both in the area of hardware and software has led to the rapid storage of data in huge volumes. Such data is referred to as a data stream. Traditional data mining methods are not capable of handling data streams because of the ubiquitous nature of data streams. The challenging task is how to store, analyse and visualise such large volumes of data. Massive data mining is a solution for these challenges. In the present analysis five different Hoeffding trees are used on the available eight dataset generators of massive online analysis framework and the results predict that stagger generator happens to be the best performer for different classifiers. Keywords: data mining; data streams; static streams; evolving streams; Hoeffding trees; classification; supervised learning; massive online analysis; MOA; framework; massive data mining; MDM; dataset generators.