An Analysis of Open Information Extraction Based on Semantic Role Labeling
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Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding
applied sciences Article Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding Jianliang Yang 1 , Yuenan Liu 1, Minghui Qian 1,*, Chenghua Guan 2 and Xiangfei Yuan 2 1 School of Information Resource Management, Renmin University of China, 59 Zhongguancun Avenue, Beijing 100872, China 2 School of Economics and Resource Management, Beijing Normal University, 19 Xinjiekou Outer Street, Beijing 100875, China * Correspondence: [email protected]; Tel.: +86-139-1031-3638 Received: 13 August 2019; Accepted: 26 August 2019; Published: 4 September 2019 Abstract: Clinical named entity recognition is an essential task for humans to analyze large-scale electronic medical records efficiently. Traditional rule-based solutions need considerable human effort to build rules and dictionaries; machine learning-based solutions need laborious feature engineering. For the moment, deep learning solutions like Long Short-term Memory with Conditional Random Field (LSTM–CRF) achieved considerable performance in many datasets. In this paper, we developed a multitask attention-based bidirectional LSTM–CRF (Att-biLSTM–CRF) model with pretrained Embeddings from Language Models (ELMo) in order to achieve better performance. In the multitask system, an additional task named entity discovery was designed to enhance the model’s perception of unknown entities. Experiments were conducted on the 2010 Informatics for Integrating Biology & the Bedside/Veterans Affairs (I2B2/VA) dataset. Experimental results show that our model outperforms the state-of-the-art solution both on the single model and ensemble model. Our work proposes an approach to improve the recall in the clinical named entity recognition task based on the multitask mechanism. -
Semantic Parsing for Single-Relation Question Answering
Semantic Parsing for Single-Relation Question Answering Wen-tau Yih Xiaodong He Christopher Meek Microsoft Research Redmond, WA 98052, USA scottyih,xiaohe,meek @microsoft.com { } Abstract the same question. That is to say that the problem of mapping from a question to a particular relation We develop a semantic parsing framework and entity in the KB is non-trivial. based on semantic similarity for open do- In this paper, we propose a semantic parsing main question answering (QA). We focus framework tailored to single-relation questions. on single-relation questions and decom- At the core of our approach is a novel semantic pose each question into an entity men- similarity model using convolutional neural net- tion and a relation pattern. Using convo- works. Leveraging the question paraphrase data lutional neural network models, we mea- mined from the WikiAnswers corpus by Fader et sure the similarity of entity mentions with al. (2013), we train two semantic similarity mod- entities in the knowledge base (KB) and els: one links a mention from the question to an the similarity of relation patterns and re- entity in the KB and the other maps a relation pat- lations in the KB. We score relational tern to a relation. The answer to the question can triples in the KB using these measures thus be derived by finding the relation–entity triple and select the top scoring relational triple r(e1, e2) in the KB and returning the entity not to answer the question. When evaluated mentioned in the question. By using a general se- on an open-domain QA task, our method mantic similarity model to match patterns and re- achieves higher precision across different lations, as well as mentions and entities, our sys- recall points compared to the previous ap- tem outperforms the existing rule learning system, proach, and can improve F1 by 7 points. -
The History and Recent Advances of Natural Language Interfaces for Databases Querying
E3S Web of Conferences 229, 01039 (2021) https://doi.org/10.1051/e3sconf/202122901039 ICCSRE’2020 The history and recent advances of Natural Language Interfaces for Databases Querying Khadija Majhadi1*, and Mustapha Machkour1 1Team of Engineering of Information Systems, Faculty of Sciences Agadir, Morocco Abstract. Databases have been always the most important topic in the study of information systems, and an indispensable tool in all information management systems. However, the extraction of information stored in these databases is generally carried out using queries expressed in a computer language, such as SQL (Structured Query Language). This generally has the effect of limiting the number of potential users, in particular non-expert database users who must know the database structure to write such requests. One solution to this problem is to use Natural Language Interface (NLI), to communicate with the database, which is the easiest way to get information. So, the appearance of Natural Language Interfaces for Databases (NLIDB) is becoming a real need and an ambitious goal to translate the user’s query given in Natural Language (NL) into the corresponding one in Database Query Language (DBQL). This article provides an overview of the state of the art of Natural Language Interfaces as well as their architecture. Also, it summarizes the main recent advances on the task of Natural Language Interfaces for databases. 1 Introduction of recent Natural Language Interfaces for databases by highlighting the architectures they used before For several years, databases have become the preferred concluding and giving some perspectives on our future medium for data storage in all information management work. -
A Meaningful Information Extraction System for Interactive Analysis of Documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère
A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère To cite this version: Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère. A meaningful infor- mation extraction system for interactive analysis of documents. International Conference on Docu- ment Analysis and Recognition (ICDAR 2019), Sep 2019, Sydney, Australia. pp.92-99, 10.1109/IC- DAR.2019.00024. hal-02552437 HAL Id: hal-02552437 https://hal.archives-ouvertes.fr/hal-02552437 Submitted on 23 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Menard,´ Guillaume Chiron, Alain Bouju, Nicolas Sidere` L3i, Faculty of Science and Technology La Rochelle University La Rochelle, France fjulien.maitre, michel.menard, guillaume.chiron, alain.bouju, [email protected] Abstract—This paper is related to a project aiming at discover- edge and enrichment of the information. A3: Visualization by ing weak signals from different streams of information, possibly putting information into perspective by creating representa- sent by whistleblowers. The study presented in this paper tackles tions and dynamic dashboards. -
Semantic Parsing with Semi-Supervised Sequential Autoencoders
Semantic Parsing with Semi-Supervised Sequential Autoencoders Toma´sˇ Kociskˇ y´†‡ Gabor´ Melis† Edward Grefenstette† Chris Dyer† Wang Ling† Phil Blunsom†‡ Karl Moritz Hermann† †Google DeepMind ‡University of Oxford tkocisky,melisgl,etg,cdyer,lingwang,pblunsom,kmh @google.com { } Abstract This is common in situations where we encode nat- ural language into a logical form governed by some We present a novel semi-supervised approach grammar or database. for sequence transduction and apply it to se- mantic parsing. The unsupervised component While such an autoencoder could in principle is based on a generative model in which latent be constructed by stacking two sequence transduc- sentences generate the unpaired logical forms. ers, modelling the latent variable as a series of dis- We apply this method to a number of semantic crete symbols drawn from multinomial distributions parsing tasks focusing on domains with lim- ited access to labelled training data and ex- creates serious computational challenges, as it re- tend those datasets with synthetically gener- quires marginalising over the space of latent se- ated logical forms. quences Σx∗. To avoid this intractable marginalisa- tion, we introduce a novel differentiable alternative for draws from a softmax which can be used with 1 Introduction the reparametrisation trick of Kingma and Welling (2014). Rather than drawing a discrete symbol in Neural approaches, in particular attention-based Σx from a softmax, we draw a distribution over sym- sequence-to-sequence models, have shown great bols from a logistic-normal distribution at each time promise and obtained state-of-the-art performance step. These serve as continuous relaxations of dis- for sequence transduction tasks including machine crete samples, providing a differentiable estimator translation (Bahdanau et al., 2015), syntactic con- of the expected reconstruction log likelihood. -
Span Model for Open Information Extraction on Accurate Corpus
Span Model for Open Information Extraction on Accurate Corpus Junlang Zhan1,2,3, Hai Zhao1,2,3,∗ 1Department of Computer Science and Engineering, Shanghai Jiao Tong University 2 Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, China 3 MoE Key Lab of Artificial Intelligence, AI Institute, Shanghai Jiao Tong University [email protected], [email protected] Abstract Sentence Repeat customers can purchase luxury items at reduced prices. Open Information Extraction (Open IE) is a challenging task Extraction (A0: repeat customers; can purchase; especially due to its brittle data basis. Most of Open IE sys- A1: luxury items; A2: at reduced prices) tems have to be trained on automatically built corpus and evaluated on inaccurate test set. In this work, we first alle- viate this difficulty from both sides of training and test sets. Table 1: An example of Open IE in a sentence. The extrac- For the former, we propose an improved model design to tion consists of a predicate (in bold) and a list of arguments, more sufficiently exploit training dataset. For the latter, we separated by semicolons. present our accurately re-annotated benchmark test set (Re- OIE2016) according to a series of linguistic observation and analysis. Then, we introduce a span model instead of previ- ous adopted sequence labeling formulization for n-ary Open long short-term memory (BiLSTM) labeler and BIO tagging IE. Our newly introduced model achieves new state-of-the-art scheme which built the first supervised learning model for performance on both benchmark evaluation datasets. -
SQL Generation from Natural Language: a Sequence-To- Sequence Model Powered by the Transformers Architecture and Association Rules
Journal of Computer Science Original Research Paper SQL Generation from Natural Language: A Sequence-to- Sequence Model Powered by the Transformers Architecture and Association Rules 1,2Youssef Mellah, 1Abdelkader Rhouati, 1El Hassane Ettifouri, 2Toumi Bouchentouf and 2Mohammed Ghaouth Belkasmi 1NovyLab Research, Novelis, Paris, France 2Mohammed First University Oujda, National School of Applied Sciences, LaRSA/SmartICT Lab, Oujda, Morocco Article history Abstract: Using Natural Language (NL) to interacting with relational Received: 12-03-2021 databases allows users from any background to easily query and analyze Revised: 21-04-2021 large amounts of data. This requires a system that understands user Accepted: 28-04-2021 questions and automatically converts them into structured query language such as SQL. The best performing Text-to-SQL systems use supervised Corresponding Author: Youssef Mellah learning (usually formulated as a classification problem) by approaching NovyLab Research, Novelis, this task as a sketch-based slot-filling problem, or by first converting Paris, France questions into an Intermediate Logical Form (ILF) then convert it to the And corresponding SQL query. However, non-supervised modeling that LARSA Laboratory, ENSAO, directly converts questions to SQL queries has proven more difficult. In Mohammed First University, this sense, we propose an approach to directly translate NL questions into Oujda, Morocco SQL statements. In this study, we present a Sequence-to-Sequence Email: [email protected] (Seq2Seq) parsing model for the NL to SQL task, powered by the Transformers Architecture exploring the two Language Models (LM): Text-To-Text Transfer Transformer (T5) and the Multilingual pre-trained Text-To-Text Transformer (mT5). Besides, we adopt the transformation- based learning algorithm to update the aggregation predictions based on association rules. -
Information Extraction Overview
INFORMATION EXTRACTION OVERVIEW Mary Ellen Okurowski Department of Defense. 9800 Savage Road, Fort Meade, Md. 20755 meokuro@ afterlife.ncsc.mil 1. DEFINITION OF INFORMATION outputs informafiou in Japanese. EXTRACTION Under ARPA sponsorship, research and development on information extraction systems has been oriented toward The information explosion of the last decade has placed evaluation of systems engaged in a series of specific increasing demands on processing and analyzing large application tasks [7][8]. The task has been template filling volumes of on-line data. In response, the Advanced for populating a database. For each task, a domain of Research Projects Agency (ARPA) has been supporting interest (i.e.. topic, for example joint ventures or research to develop a new technology called information microelectronics chip fabrication) is selected. Then this extraction. Information extraction is a type of document domain scope is narrowed by delineating the particular processing which capttnes and outputs factual information types of factual information of interest, specifically, the contained within a document. Similar to an information generic type of information to be extracted and the form of retrieval (lid system, an information extraction system the output of that information. This information need responds to a user's information need. Whereas an IR definition is called the template. The design of a template, system identifies a subset of documents in a large text which corresponds to the design of the database to be database or in a library scenario a subset of resources in a populated, resembles any form that you may fdl out. For library, an information extraction system identifies a subset example, certain fields in the template require normalizing of information within a document. -
Open Information Extraction from The
Open Information Extraction from the Web Michele Banko, Michael J Cafarella, Stephen Soderland, Matt Broadhead and Oren Etzioni Turing Center Department of Computer Science and Engineering University of Washington Box 352350 Seattle, WA 98195, USA {banko,mjc,soderlan,hastur,etzioni}@cs.washington.edu Abstract Information Extraction (IE) has traditionally relied on ex- tensive human involvement in the form of hand-crafted ex- Traditionally, Information Extraction (IE) has fo- traction rules or hand-tagged training examples. Moreover, cused on satisfying precise, narrow, pre-specified the user is required to explicitly pre-specify each relation of requests from small homogeneous corpora (e.g., interest. While IE has become increasingly automated over extract the location and time of seminars from a time, enumerating all potential relations of interest for ex- set of announcements). Shifting to a new domain traction by an IE system is highly problematic for corpora as requires the user to name the target relations and large and varied as the Web. To make it possible for users to to manually create new extraction rules or hand-tag issue diverse queries over heterogeneous corpora, IE systems new training examples. This manual labor scales must move away from architectures that require relations to linearly with the number of target relations. be specified prior to query time in favor of those that aim to This paper introduces Open IE (OIE), a new ex- discover all possible relations in the text. traction paradigm where the system makes a single In the past, IE has been used on small, homogeneous cor- data-driven pass over its corpus and extracts a large pora such as newswire stories or seminar announcements. -
Information Extraction Using Natural Language Processing
INFORMATION EXTRACTION USING NATURAL LANGUAGE PROCESSING Cvetana Krstev University of Belgrade, Faculty of Philology Information Retrieval and/vs. Natural Language Processing So close yet so far Outline of the talk ◦ Views on Information Retrieval (IR) and Natural Language Processing (NLP) ◦ IR and NLP in Serbia ◦ Language Resources (LT) in the core of NLP ◦ at University of Belgrade (4 representative resources) ◦ LR and NLP for Information Retrieval and Information Extraction (IE) ◦ at University of Belgrade (4 representative applications) Wikipedia ◦ Information retrieval ◦ Information retrieval (IR) is the activity of obtaining information resources relevant to an information need from a collection of information resources. Searches can be based on full-text or other content-based indexing. ◦ Natural Language Processing ◦ Natural language processing is a field of computer science, artificial intelligence, and computational linguistics concerned with the interactions between computers and human (natural) languages. As such, NLP is related to the area of human–computer interaction. Many challenges in NLP involve: natural language understanding, enabling computers to derive meaning from human or natural language input; and others involve natural language generation. Experts ◦ Information Retrieval ◦ As an academic field of study, Information Retrieval (IR) is finding material (usually documents) of an unstructured nature (usually text) that satisfies an information need from within large collection (usually stored on computers). ◦ C. D. Manning, P. Raghavan, H. Schutze, “Introduction to Information Retrieval”, Cambridge University Press, 2008 ◦ Natural Language Processing ◦ The term ‘Natural Language Processing’ (NLP) is normally used to describe the function of software or hardware components in computer system which analyze or synthesize spoken or written language. -
What Is Special About Patent Information Extraction?
EEKE 2020 - Workshop on Extraction and Evaluation of Knowledge Entities from Scientific Documents What is Special about Patent Information Extraction? Liang Chen† Shuo Xu Weijiao Shang Institute of Scientific and Technical College of Economics and Research Institute of Forestry Information of China Management Policy and Information Beijing, China P.R. Beijing University of Technology Chinese Academy of Forestry [email protected] Beijing, China P.R. Beijing, China P.R. [email protected] [email protected] Zheng Wang Chao Wei Haiyun Xu Institute of Scientific and Technical Institute of Scientific and Technical Chengdu Library and Information Information of China Information of China Center Beijing, China P.R. Beijing, China P.R. Chinese Academy of Sciences [email protected] [email protected] Beijing, China P.R. [email protected] ABSTRACT However, the particularity of patent text enables the performance of general information-extraction tools to reduce greatly. Information extraction is the fundamental technique for text-based Therefore, it is necessary to deeply explore patent information patent analysis in era of big data. However, the specialty of patent extraction, and provide ideas for subsequent research. text enables the performance of general information-extraction Information extraction is a big topic, but it is far from being methods to reduce noticeably. To solve this problem, an in-depth well explored in IP (Intelligence Property) field. To the best of our exploration has to be done for clarify the particularity in patent knowledge, there are only three labeled datasets publicly available information extraction, thus to point out the direction for further in the literature which contain annotations of named entity and research. -
Semantic Parsing with Neural Hybrid Trees
Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence (AAAI-17) Semantic Parsing with Neural Hybrid Trees Raymond Hendy Susanto, Wei Lu Singapore University of Technology and Design 8 Somapah Road, Singapore 487372 {raymond susanto, luwei}@sutd.edu.sg Abstract QUERY : answer(STATE) We propose a neural graphical model for parsing natural lan- STATE : exclude(STATE, STATE) guage sentences into their logical representations. The graph- ical model is based on hybrid tree structures that jointly rep- : state( ) : next to( ) resent both sentences and semantics. Learning and decoding STATE all STATE STATE are done using efficient dynamic programming algorithms. The model is trained under a discriminative setting, which STATE : stateid(STATENAME) allows us to incorporate a rich set of features. Hybrid tree structures have shown to achieve state-of-the-art results on STATENAME :(tx ) standard semantic parsing datasets. In this work, we propose a novel model that incorporates a rich, nonlinear featurization Which states do not border Texas ? by a feedforward neural network. The error signals are com- puted with respect to the conditional random fields (CRFs) objective using an inside-outside algorithm, which are then Figure 1: An example tree-structured semantic representa- backpropagated to the neural network. We demonstrate that tion and its corresponding natural language sentence. by combining the strengths of the exact global inference in the hybrid tree models and the power of neural networks to extract high level features, our model is able to achieve new explicit labelings between words and meaning representa- state-of-the-art results on standard benchmark datasets across tion tokens are not available in the training data.