Visualpic: a NEW DATA VISUALIZER and POST-PROCESSOR for PARTICLE-IN-CELL CODES∗
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A Comparative Evaluation of Matlab, Octave, R, and Julia on Maya 1 Introduction
A Comparative Evaluation of Matlab, Octave, R, and Julia on Maya Sai K. Popuri and Matthias K. Gobbert* Department of Mathematics and Statistics, University of Maryland, Baltimore County *Corresponding author: [email protected], www.umbc.edu/~gobbert Technical Report HPCF{2017{3, hpcf.umbc.edu > Publications Abstract Matlab is the most popular commercial package for numerical computations in mathematics, statistics, the sciences, engineering, and other fields. Octave is a freely available software used for numerical computing. R is a popular open source freely available software often used for statistical analysis and computing. Julia is a recent open source freely available high-level programming language with a sophisticated com- piler for high-performance numerical and statistical computing. They are all available to download on the Linux, Windows, and Mac OS X operating systems. We investigate whether the three freely available software are viable alternatives to Matlab for uses in research and teaching. We compare the results on part of the equipment of the cluster maya in the UMBC High Performance Computing Facility. The equipment has 72 nodes, each with two Intel E5-2650v2 Ivy Bridge (2.6 GHz, 20 MB cache) proces- sors with 8 cores per CPU, for a total of 16 cores per node. All nodes have 64 GB of main memory and are connected by a quad-data rate InfiniBand interconnect. The tests focused on usability lead us to conclude that Octave is the most compatible with Matlab, since it uses the same syntax and has the native capability of running m-files. R was hampered by somewhat different syntax or function names and some missing functions. -
Data Visualization in Python
Data visualization in python Day 2 A variety of packages and philosophies • (today) matplotlib: http://matplotlib.org/ – Gallery: http://matplotlib.org/gallery.html – Frequently used commands: http://matplotlib.org/api/pyplot_summary.html • Seaborn: http://stanford.edu/~mwaskom/software/seaborn/ • ggplot: – R version: http://docs.ggplot2.org/current/ – Python port: http://ggplot.yhathq.com/ • Bokeh (live plots in your browser) – http://bokeh.pydata.org/en/latest/ Biocomputing Bootcamp 2017 Matplotlib • Gallery: http://matplotlib.org/gallery.html • Top commands: http://matplotlib.org/api/pyplot_summary.html • Provides "pylab" API, a mimic of matlab • Many different graph types and options, some obscure Biocomputing Bootcamp 2017 Matplotlib • Resulting plots represented by python objects, from entire figure down to individual points/lines. • Large API allows any aspect to be tweaked • Lengthy coding sometimes required to make a plot "just so" Biocomputing Bootcamp 2017 Seaborn • https://stanford.edu/~mwaskom/software/seaborn/ • Implements more complex plot types – Joint points, clustergrams, fitted linear models • Uses matplotlib "under the hood" Biocomputing Bootcamp 2017 Others • ggplot: – (Original) R version: http://docs.ggplot2.org/current/ – A recent python port: http://ggplot.yhathq.com/ – Elegant syntax for compactly specifying plots – but, they can be hard to tweak – We'll discuss this on the R side tomorrow, both the basics of both work similarly. • Bokeh – Live, clickable plots in your browser! – http://bokeh.pydata.org/en/latest/ -
List of Applications Updated in ARL #2530
List of Applications Updated in ARL #2530 Application Name Publisher .NET Core SDK 2 Microsoft Acrobat Elements Adobe Acrobat Elements 10 Adobe Acrobat Elements 11.0 Adobe Acrobat Elements 15.1 Adobe Acrobat Elements 15.7 Adobe Acrobat Elements 15.9 Adobe Acrobat Elements 6.0 Adobe Acrobat Elements 7.0 Adobe Application Name Acrobat Elements 8 Adobe Acrobat Elements 9 Adobe Acrobat Reader DC Adobe Acrobat.com 1 Adobe Alchemy OpenText Alchemy 9.0 OpenText Amazon Drive 4.0 Amazon Amazon WorkSpaces 1.1 Amazon Amazon WorkSpaces 2.1 Amazon Amazon WorkSpaces 2.2 Amazon Amazon WorkSpaces 2.3 Amazon Ansys Ansys Archive Server 10.1 OpenText AutoIt 2.6 AutoIt Team AutoIt 3.0 AutoIt Team AutoIt 3.2 AutoIt Team Azure Data Studio 1.9 Microsoft Azure Information Protection 1.0 Microsoft Captiva Cloud Toolkit 3.0 OpenText Capture Document Extraction OpenText CloneDVD 2 Elaborate Bytes Cognos Business Intelligence Cube Designer 10.2 IBM Cognos Business Intelligence Cube Designer 11.0 IBM Cognos Business Intelligence Cube Designer for Non-Production environment 10.2 IBM Commons Daemon 1.0 Apache Software Foundation Crystal Reports 11.0 SAP Data Explorer 8.6 Informatica DemoCreator 3.5 Wondershare Software Deployment Wizard 9.3 SAS Institute Deployment Wizard 9.4 SAS Institute Desktop Link 9.7 OpenText Desktop Viewer Unspecified OpenText Document Pipeline DocTools 10.5 OpenText Dropbox 1 Dropbox Dropbox 73.4 Dropbox Dropbox 74.4 Dropbox Dropbox 75.4 Dropbox Dropbox 76.4 Dropbox Dropbox 77.4 Dropbox Dropbox 78.4 Dropbox Dropbox 79.4 Dropbox Dropbox 81.4 -
KDE Free Qt Foundation Strengthens Qt
How the KDE Free Qt Foundation strengthens Qt by Olaf Schmidt-Wischhöfer (board member of the foundation)1, December 2019 Executive summary The development framework Qt is available both as Open Source and under paid license terms. Two decades ago, when Qt 2.0 was first released as Open Source, this was excep- tional. Today, most popular developing frameworks are Free/Open Source Software2. Without the dual licensing approach, Qt would not exist today as a popular high-quality framework. There is another aspect of Qt licensing which is still very exceptional today, and which is not as well-known as it ought to be. The Open Source availability of Qt is legally protected through the by-laws and contracts of a foundation. 1 I thank Eike Hein, board member of KDE e.V., for contributing. 2 I use the terms “Open Source” and “Free Software” interchangeably here. Both have a long history, and the exact differences between them do not matter for the purposes of this text. How the KDE Free Qt Foundation strengthens Qt 2 / 19 The KDE Free Qt Foundation was created in 1998 and guarantees the continued availabil- ity of Qt as Free/Open Source Software3. When it was set up, Qt was developed by Troll- tech, its original company. The foundation supported Qt through the transitions first to Nokia and then to Digia and to The Qt Company. In case The Qt Company would ever attempt to close down Open Source Qt, the founda- tion is entitled to publish Qt under the BSD license. This notable legal guarantee strengthens Qt. -
Qt Long Term Support
Qt Long Term Support Jeramie disapprove chorally as moreish Biff jostling her canneries co-author impassably. Rudolfo never anatomise any redemptioner sauces appetizingly, is Torre lexical and overripe enough? Post-free Adolph usually stetted some basidiospores or flutes effeminately. Kde qt versions to the tests should be long qt term support for backing up qt company What will i, long qt term support for sale in the long. It is hard not even wonder what our cost whereas the Qt community or be. Please enter your support available to long term support available to notify others of the terms. What tests are needed? You should i restarted the terms were examined further development and will be supported for arrhythmia, or the condition? Define ad slots and config. Also, have a look at the comments below for new findings. You later need to compile your own Qt against a WEC SDK which is typically shipped by the BSP vendor. If system only involve half open the features of Qt Commercial, vision will not warrant the full price. Are you javer for long term support life cycles that supports the latter occurs earlier that opens up. Cmake will be happy to dry secretions, mutation will i could be seen at. QObjects can also send signals to themselves. Q_DECL_CONSTEXPR fix memory problem. Enables qt syndrome have long term in terms and linux. There has been lots of hype around the increasing role that machine learning, and artificial intelligence more broadly, will play in how we automate the management of IT systems. Vf noninducible at qt and long term in terms were performed at. -
Our Journey from Java to Pyqt and Web for Cern Accelerator Control Guis I
17th Int. Conf. on Acc. and Large Exp. Physics Control Systems ICALEPCS2019, New York, NY, USA JACoW Publishing ISBN: 978-3-95450-209-7 ISSN: 2226-0358 doi:10.18429/JACoW-ICALEPCS2019-TUCPR03 OUR JOURNEY FROM JAVA TO PYQT AND WEB FOR CERN ACCELERATOR CONTROL GUIS I. Sinkarenko, S. Zanzottera, V. Baggiolini, BE-CO-APS, CERN, Geneva, Switzerland Abstract technology choices for GUI, even at the cost of not using Java – our core technology – for GUIs anymore. For more than 15 years, operational GUIs for accelerator controls and some lab applications for equipment experts have been developed in Java, first with Swing and more CRITERIA FOR SELECTING A NEW GUI recently with JavaFX. In March 2018, Oracle announced that Java GUIs were not part of their strategy anymore [1]. TECHNOLOGY They will not ship JavaFX after Java 8 and there are hints In our evaluation of GUI technologies, we considered that they would like to get rid of Swing as well. the following criteria: This was a wakeup call for us. We took the opportunity • Technical match: suitability for Desktop GUI to reconsider all technical options for developing development and good integration with the existing operational GUIs. Our options ranged from sticking with controls environment (Linux, Java, C/C++) and the JavaFX, over using the Qt framework (either using PyQt APIs to the control system; or developing our own Java Bindings to Qt), to using Web • Popularity among our current and future developers: technology both in a browser and in native desktop little (additional) learning effort, attractiveness for new applications. -
Principal Components Analysis Tutorial 4 Yang
Principal Components Analysis Tutorial 4 Yang 1 Objectives Understand the principles of principal components analysis (PCA) Know the principal components analysis method Study the PCA function of sickit-learn.decomposition Process the data set by the PCA of sickit-learn Learn to apply PCA in a reality example 2 Principal Components Analysis Method: ̶ Subtract the mean ̶ Calculate the covariance matrix ̶ Calculate the eigenvectors and eigenvalues of the covariance matrix ̶ Choosing components and forming a feature vector ̶ Deriving the new data set 3 Example 1 x y 퐷푎푡푎 = 2.5 2.4 0.5 0.7 2.2 2.9 1.9 2.2 3.1 3.0 2.3 2.7 2 1.6 1 1.1 1.5 1.6 1.1 0.9 4 sklearn.decomposition.PCA It uses the LAPACK implementation of the full SVD or a randomized truncated SVD by the method of Halko et al. 2009, depending on the shape of the input data and the number of components to extract. It can also use the scipy.sparse.linalg ARPACK implementation of the truncated SVD. Notice that this class does not upport sparse input. 5 Parameters of PCA n_components: Number of components to keep. svd_solver: if n_components is not set: n_components == auto: default, if the input data is larger than 500x500 min (n_samples, n_features), default=None and the number of components to extract is lower than 80% of the smallest dimension of the data, then the more efficient ‘randomized’ method is enabled. if n_components == ‘mle’ and svd_solver == ‘full’, Otherwise the exact full SVD is computed and Minka’s MLE is used to guess the dimension optionally truncated afterwards. -
Pandas: Powerful Python Data Analysis Toolkit Release 0.25.3
pandas: powerful Python data analysis toolkit Release 0.25.3 Wes McKinney& PyData Development Team Nov 02, 2019 CONTENTS i ii pandas: powerful Python data analysis toolkit, Release 0.25.3 Date: Nov 02, 2019 Version: 0.25.3 Download documentation: PDF Version | Zipped HTML Useful links: Binary Installers | Source Repository | Issues & Ideas | Q&A Support | Mailing List pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. See the overview for more detail about whats in the library. CONTENTS 1 pandas: powerful Python data analysis toolkit, Release 0.25.3 2 CONTENTS CHAPTER ONE WHATS NEW IN 0.25.2 (OCTOBER 15, 2019) These are the changes in pandas 0.25.2. See release for a full changelog including other versions of pandas. Note: Pandas 0.25.2 adds compatibility for Python 3.8 (GH28147). 1.1 Bug fixes 1.1.1 Indexing • Fix regression in DataFrame.reindex() not following the limit argument (GH28631). • Fix regression in RangeIndex.get_indexer() for decreasing RangeIndex where target values may be improperly identified as missing/present (GH28678) 1.1.2 I/O • Fix regression in notebook display where <th> tags were missing for DataFrame.index values (GH28204). • Regression in to_csv() where writing a Series or DataFrame indexed by an IntervalIndex would incorrectly raise a TypeError (GH28210) • Fix to_csv() with ExtensionArray with list-like values (GH28840). 1.1.3 Groupby/resample/rolling • Bug incorrectly raising an IndexError when passing a list of quantiles to pandas.core.groupby. DataFrameGroupBy.quantile() (GH28113). -
MATLAB Commands in Numerical Python (Numpy) 1 Vidar Bronken Gundersen /Mathesaurus.Sf.Net
MATLAB commands in numerical Python (NumPy) 1 Vidar Bronken Gundersen /mathesaurus.sf.net MATLAB commands in numerical Python (NumPy) Copyright c Vidar Bronken Gundersen Permission is granted to copy, distribute and/or modify this document as long as the above attribution is kept and the resulting work is distributed under a license identical to this one. The idea of this document (and the corresponding xml instance) is to provide a quick reference for switching from matlab to an open-source environment, such as Python, Scilab, Octave and Gnuplot, or R for numeric processing and data visualisation. Where Octave and Scilab commands are omitted, expect Matlab compatibility, and similarly where non given use the generic command. Time-stamp: --T:: vidar 1 Help Desc. matlab/Octave Python R Browse help interactively doc help() help.start() Octave: help -i % browse with Info Help on using help help help or doc doc help help() Help for a function help plot help(plot) or ?plot help(plot) or ?plot Help for a toolbox/library package help splines or doc splines help(pylab) help(package=’splines’) Demonstration examples demo demo() Example using a function example(plot) 1.1 Searching available documentation Desc. matlab/Octave Python R Search help files lookfor plot help.search(’plot’) Find objects by partial name apropos(’plot’) List available packages help help(); modules [Numeric] library() Locate functions which plot help(plot) find(plot) List available methods for a function methods(plot) 1.2 Using interactively Desc. matlab/Octave Python R Start session Octave: octave -q ipython -pylab Rgui Auto completion Octave: TAB or M-? TAB Run code from file foo(.m) execfile(’foo.py’) or run foo.py source(’foo.R’) Command history Octave: history hist -n history() Save command history diary on [..] diary off savehistory(file=".Rhistory") End session exit or quit CTRL-D q(save=’no’) CTRL-Z # windows sys.exit() 2 Operators Desc. -
General Relativity Computations with Sagemanifolds
General relativity computations with SageManifolds Eric´ Gourgoulhon Laboratoire Univers et Th´eories (LUTH) CNRS / Observatoire de Paris / Universit´eParis Diderot 92190 Meudon, France http://luth.obspm.fr/~luthier/gourgoulhon/ NewCompStar School 2016 Neutron stars: gravitational physics theory and observations Coimbra (Portugal) 5-9 September 2016 Eric´ Gourgoulhon (LUTH) GR computations with SageManifolds NewCompStar, Coimbra, 6 Sept. 2016 1 / 29 Outline 1 Computer differential geometry and tensor calculus 2 The SageManifolds project 3 Let us practice! 4 Other examples 5 Conclusion and perspectives Eric´ Gourgoulhon (LUTH) GR computations with SageManifolds NewCompStar, Coimbra, 6 Sept. 2016 2 / 29 Computer differential geometry and tensor calculus Outline 1 Computer differential geometry and tensor calculus 2 The SageManifolds project 3 Let us practice! 4 Other examples 5 Conclusion and perspectives Eric´ Gourgoulhon (LUTH) GR computations with SageManifolds NewCompStar, Coimbra, 6 Sept. 2016 3 / 29 In 1965, J.G. Fletcher developed the GEOM program, to compute the Riemann tensor of a given metric In 1969, during his PhD under Pirani supervision, Ray d'Inverno wrote ALAM (Atlas Lisp Algebraic Manipulator) and used it to compute the Riemann tensor of Bondi metric. The original calculations took Bondi and his collaborators 6 months to go. The computation with ALAM took 4 minutes and yielded to the discovery of 6 errors in the original paper [J.E.F. Skea, Applications of SHEEP (1994)] Since then, many softwares for tensor calculus have been developed... Computer differential geometry and tensor calculus Introduction Computer algebra system (CAS) started to be developed in the 1960's; for instance Macsyma (to become Maxima in 1998) was initiated in 1968 at MIT Eric´ Gourgoulhon (LUTH) GR computations with SageManifolds NewCompStar, Coimbra, 6 Sept. -
List of Applications Updated in ARL #2532
List of Applications Updated in ARL #2532 Application Name Publisher Robo 3T 1.1 3T Software Labs Robo 3T 1.2 3T Software Labs Robo 3T 1.3 3T Software Labs Studio 3T 2018 3T Software Labs Studio 3T 2019 3T Software Labs Acrobat Elements Adobe Acrobat Elements 10 Adobe Acrobat Elements 11.0 Adobe Acrobat Elements 15.1 Adobe Acrobat Elements 15.7 Adobe Acrobat Elements 15.9 Adobe Acrobat Elements 6.0 Adobe Acrobat Elements 7.0 Adobe Acrobat Elements 8 Adobe Acrobat Elements 9 Adobe Acrobat Reader DC Adobe Acrobat.com 1 Adobe Shockwave Player 12 Adobe Amazon Drive 4.0 Amazon Amazon WorkSpaces 1.1 Amazon Amazon WorkSpaces 2.1 Amazon Amazon WorkSpaces 2.2 Amazon Amazon WorkSpaces 2.3 Amazon Kindle 1 Amazon MP3 Downloader 1 Amazon Unbox Video 1 Amazon Unbox Video 2 Amazon Ansys Ansys Workbench Ansys Commons Daemon 1.0 Apache Software Foundation NetBeans IDE 5.0 Apache Software Foundation NetBeans IDE 5.5 Apache Software Foundation NetBeans IDE 7.2 Apache Software Foundation NetBeans IDE 7.2 Beta Apache Software Foundation NetBeans IDE 7.3 Apache Software Foundation NetBeans IDE 7.4 Apache Software Foundation NetBeans IDE 8.0 Apache Software Foundation Tomcat 5 Apache Software Foundation AutoIt 2.6 AutoIt Team AutoIt 3.0 AutoIt Team AutoIt 3.2 AutoIt Team PDF Printer 10 Bullzip PDF Printer 11 Bullzip PDF Printer 3 Bullzip PDF Printer 5 Bullzip PDF Printer 6 Bullzip The Unarchiver 3.1 Dag Agren KeePass Portable 1 Dominik Reichl Dropbox 1 Dropbox Dropbox 73.4 Dropbox Dropbox 74.4 Dropbox Dropbox 75.4 Dropbox Dropbox 76.4 Dropbox Dropbox 77.4 Dropbox -
Basic Plotting with Python and Matplotlib
Basic Plotting with Python and Matplotlib This guide assumes that you have already installed NumPy and Matplotlib for your Python distribution. You can check if it is installed by importing it: import numpy as np import matplotlib.pyplot as plt # The code below assumes this convenient renaming For those of you familiar with MATLAB, the basic Matplotlib syntax is very similar. 1 Line plots The basic syntax for creating line plots is plt.plot(x,y), where x and y are arrays of the same length that specify the (x; y) pairs that form the line. For example, let's plot the cosine function from −2 to 1. To do so, we need to provide a discretization (grid) of the values along the x-axis, and evaluate the function on each x value. This can typically be done with numpy.arange or numpy.linspace. xvals = np.arange(-2, 1, 0.01) # Grid of 0.01 spacing from -2 to 10 yvals = np.cos(xvals) # Evaluate function on xvals plt.plot(xvals, yvals) # Create line plot with yvals against xvals plt.show() # Show the figure You should put the plt.show command last after you have made all relevant changes to the plot. You can create multiple figures by creating new figure windows with plt.figure(). To output all these figures at once, you should only have one plt.show command at the very end. Also, unless you turned the interactive mode on, the code will be paused until you close the figure window. Suppose we want to add another plot, the quadratic approximation to the cosine function.