AST News Update, Volume 6, Issue 1 – April 2021
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Table S4. Phylogenetic Distribution of Bacterial and Archaea Genomes in Groups A, B, C, D, and X
Table S4. Phylogenetic distribution of bacterial and archaea genomes in groups A, B, C, D, and X. Group A a: Total number of genomes in the taxon b: Number of group A genomes in the taxon c: Percentage of group A genomes in the taxon a b c cellular organisms 5007 2974 59.4 |__ Bacteria 4769 2935 61.5 | |__ Proteobacteria 1854 1570 84.7 | | |__ Gammaproteobacteria 711 631 88.7 | | | |__ Enterobacterales 112 97 86.6 | | | | |__ Enterobacteriaceae 41 32 78.0 | | | | | |__ unclassified Enterobacteriaceae 13 7 53.8 | | | | |__ Erwiniaceae 30 28 93.3 | | | | | |__ Erwinia 10 10 100.0 | | | | | |__ Buchnera 8 8 100.0 | | | | | | |__ Buchnera aphidicola 8 8 100.0 | | | | | |__ Pantoea 8 8 100.0 | | | | |__ Yersiniaceae 14 14 100.0 | | | | | |__ Serratia 8 8 100.0 | | | | |__ Morganellaceae 13 10 76.9 | | | | |__ Pectobacteriaceae 8 8 100.0 | | | |__ Alteromonadales 94 94 100.0 | | | | |__ Alteromonadaceae 34 34 100.0 | | | | | |__ Marinobacter 12 12 100.0 | | | | |__ Shewanellaceae 17 17 100.0 | | | | | |__ Shewanella 17 17 100.0 | | | | |__ Pseudoalteromonadaceae 16 16 100.0 | | | | | |__ Pseudoalteromonas 15 15 100.0 | | | | |__ Idiomarinaceae 9 9 100.0 | | | | | |__ Idiomarina 9 9 100.0 | | | | |__ Colwelliaceae 6 6 100.0 | | | |__ Pseudomonadales 81 81 100.0 | | | | |__ Moraxellaceae 41 41 100.0 | | | | | |__ Acinetobacter 25 25 100.0 | | | | | |__ Psychrobacter 8 8 100.0 | | | | | |__ Moraxella 6 6 100.0 | | | | |__ Pseudomonadaceae 40 40 100.0 | | | | | |__ Pseudomonas 38 38 100.0 | | | |__ Oceanospirillales 73 72 98.6 | | | | |__ Oceanospirillaceae -
Conjugate and Prodrug Strategies As Targeted Delivery Vectors for Antibiotics † † ‡ Ana V
Review Cite This: ACS Infect. Dis. XXXX, XXX, XXX−XXX pubs.acs.org/journal/aidcbc Signed, Sealed, Delivered: Conjugate and Prodrug Strategies as Targeted Delivery Vectors for Antibiotics † † ‡ Ana V. Cheng and William M. Wuest*, , † Department of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, Georgia 30322, United States ‡ Emory Antibiotic Resistance Center, Emory School of Medicine, 201 Dowman Drive, Atlanta, Georgia 30322, United States ABSTRACT: Innate and developed resistance mechanisms of bacteria to antibiotics are obstacles in the design of novel drugs. However, antibacterial prodrugs and conjugates have shown promise in circumventing resistance and tolerance mechanisms via directed delivery of antibiotics to the site of infection or to specific species or strains of bacteria. The selective targeting and increased permeability and accumu- lation of these prodrugs not only improves efficacy over unmodified drugs but also reduces off-target effects, toxicity, and development of resistance. Herein, we discuss some of these methods, including sideromycins, antibody-directed prodrugs, cell penetrating peptide conjugates, and codrugs. KEYWORDS: oligopeptide, sideromycin, antibody−antibiotic conjugate, cell penetrating peptide, dendrimer, transferrin inding new and innovative methods to treat bacterial F infections comes with many inherent challenges in addition to those presented by the evolution of resistance mechanisms. The ideal antibiotic is nontoxic to host cells, permeates bacterial cells easily, and accumulates at the site of infection at high concentrations. Narrow spectrum drugs are also advantageous, as they can limit resistance development and leave the host commensal microbiome undisturbed.1 However, various resistance mechanisms make pathogenic infections difficult to eradicate: Many bacteria respond to antibiotic pressure by decreasing expression of active transporters and porins2 and 3,4 Downloaded via EMORY UNIV on April 18, 2019 at 12:34:17 (UTC). -
Swedres-Svarm 2019
2019 SWEDRES|SVARM Sales of antibiotics and occurrence of antibiotic resistance in Sweden 2 SWEDRES |SVARM 2019 A report on Swedish Antibiotic Sales and Resistance in Human Medicine (Swedres) and Swedish Veterinary Antibiotic Resistance Monitoring (Svarm) Published by: Public Health Agency of Sweden and National Veterinary Institute Editors: Olov Aspevall and Vendela Wiener, Public Health Agency of Sweden Oskar Nilsson and Märit Pringle, National Veterinary Institute Addresses: The Public Health Agency of Sweden Solna. SE-171 82 Solna, Sweden Östersund. Box 505, SE-831 26 Östersund, Sweden Phone: +46 (0) 10 205 20 00 Fax: +46 (0) 8 32 83 30 E-mail: [email protected] www.folkhalsomyndigheten.se National Veterinary Institute SE-751 89 Uppsala, Sweden Phone: +46 (0) 18 67 40 00 Fax: +46 (0) 18 30 91 62 E-mail: [email protected] www.sva.se Text, tables and figures may be cited and reprinted only with reference to this report. Images, photographs and illustrations are protected by copyright. Suggested citation: Swedres-Svarm 2019. Sales of antibiotics and occurrence of resistance in Sweden. Solna/Uppsala ISSN1650-6332 ISSN 1650-6332 Article no. 19088 This title and previous Swedres and Svarm reports are available for downloading at www.folkhalsomyndigheten.se/ Scan the QR code to open Swedres-Svarm 2019 as a pdf in publicerat-material/ or at www.sva.se/swedres-svarm/ your mobile device, for reading and sharing. Use the camera in you’re mobile device or download a free Layout: Dsign Grafisk Form, Helen Eriksson AB QR code reader such as i-nigma in the App Store for Apple Print: Taberg Media Group, Taberg 2020 devices or in Google Play. -
New Antibiotics for the Treatment of Acute Bacterial Skin and Soft Tissue Infections in Pediatrics
pharmaceuticals Review New Antibiotics for the Treatment of Acute Bacterial Skin and Soft Tissue Infections in Pediatrics Nicola Principi 1, Alberto Argentiero 2, Cosimo Neglia 2, Andrea Gramegna 3,4 and Susanna Esposito 2,* 1 Università degli Studi di Milano, 20122 Milan, Italy; [email protected] 2 Pediatric Clinic, Pietro Barilla Children’s Hospital, Department of Medicine and Surgery, University of Parma, 43121 Parma, Italy; [email protected] (A.A.); [email protected] (C.N.) 3 Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico, Internal Medicine Department, Respiratory Unit and Cystic Fibrosis Adult Center, 20122 Milan, Italy; [email protected] 4 Department of Pathophysiology and Transplantation, University of Milan, 20122 Milan, Italy * Correspondence: [email protected]; Tel.: +39-052-190-3524 Received: 29 September 2020; Accepted: 19 October 2020; Published: 23 October 2020 Abstract: Acute bacterial skin and soft tissue infections (aSSTIs) are a large group of diseases that can involve exclusively the skin or also the underlying subcutaneous tissues, fascia, or muscles. Despite differences in the localization and severity, all these diseases are due mainly to Gram-positive bacteria, especially Staphylococcus aureus and Streptococcus pyogenes. aSSTI incidence increased considerably in the early years of this century due to the emergence and diffusion of community-acquired methicillin-resistant S. aureus (CA-MRSA). Despite the availability of antibiotics effective against CA-MRSA, problems of resistance to these drugs and risks of significant adverse events have emerged. In this paper, the present knowledge on the potential role new antibiotics for the treatment of pediatric aSSTIs is discussed. The most recent molecules that have been licensed for the treatment of aSSTIs include ozenoxacin (OZ), ceftaroline fosamil (CF), dalbavancin (DA), oritavancin (OR), tedizolid (TD), delafloxacin (DL), and omadacycline (OM). -
Endosymbiont Diversity and Evolution Across Weevil Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/171181; this version posted August 1, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Endosymbiont diversity and evolution across weevil tree of life Guanyang Zhang1#, Patrick Browne1,2#, Geng Zhen1#, Andrew Johnston4, Hinsby Cadillo-Quiroz5, and Nico Franz1 1 School of Life Sciences, Arizona State University, Tempe, Arizona, USA 2 Department of Environmental Science, Aarhus University, 4000 Roskilde, Denmark # These authors contributed equally to this work ABSTRACT As early as the time of Paul Buchner, a pioneer of endosymbionts research, it was shown that weevils host diverse bacterial endosymbionts, probably only second to the hemipteran insects. To date, there is no taxonomically broad survey of endosymbionts in weevils, which preclude any systematic understanding of the diversity and evolution of endosymbionts in this large group of insects, which comprise nearly 7% of described diversity of all insects. We gathered the largest known taxonomic sample of weevils representing four families and 17 subfamilies to perform a study of weevil endosymbionts. We found that the diversity of endosymbionts is exceedingly high, with as many as 44 distinct kinds of endosymbionts detected. We recovered an ancient origin of association of Nardonella with weevils, dating back to 124 MYA. We found repeated losses of this endosymbionts, but also cophylogeny with weevils. We also investigated patterns of coexistence and coexclusion. INTRODUCTION Weevils (Insecta: Coleoptera: Curculionoidea) host diverse bacterial endosymbionts. -
Antibacterial Efficacy of Eravacycline in Vivo Against Gram-Positive And
crossmark Antibacterial Efficacy of Eravacycline In Vivo against Gram-Positive and Gram-Negative Organisms Marguerite L. Monogue,a Abrar K. Thabit,a,b Yukihiro Hamada,a,c David P. Nicolaua,d Center for Anti-Infective Research and Development, Hartford Hospital, Hartford, Connecticut, USAa; Faculty of Pharmacy, King Abdulaziz University, Jeddah, Saudi Arabiab; Aichi Medical University Hospital School of Medicine, Aichi, Japanc; Division of Infectious Diseases, Hartford Hospital, Hartford, Connecticut, USAd Members of the tetracycline class are frequently classified as bacteriostatic. However, recent findings have demonstrated an im- > proved antibacterial killing profile, often achieving 3 log10 bacterial count reduction, when such antibiotics have been given for periods longer than 24 h. We aimed to study this effect with eravacycline, a novel fluorocycline, given in an immunocompetent murine thigh infection model over 72 h against two methicillin-resistant Staphylococcus aureus (MRSA) isolates (eravacycline to 0.25 g/ml). A humanized Downloaded from 0.125 ؍ and 0.25 g/ml) and three Enterobacteriaceae isolates (eravacycline MICs 0.03 ؍ MICs eravacycline regimen, 2.5 mg/kg of body weight given intravenously (i.v.) every 12 h (q12h), demonstrated progressively en- hanced activity over the 72-h study period. A cumulative dose response in which bacterial density was reduced by more than 3 log10 CFU at 72 h was noted over the study period in the two Gram-positive isolates, and eravacycline performed similarly to comparator antibiotics (tigecycline, linezolid, and vancomycin). A cumulative dose response with eravacycline and comparators (tigecycline and meropenem) over the study period was also observed in the Gram-negative isolates, although more variability in bacterial killing was observed for all antibacterial agents. -
Diversity of Culturable Gut Bacteria of Diamondback Moth, Plutella Xylostella (Linnaeus) (Lepidoptera: Yponomeutidae) Collected
Diversity of Culturable Gut Bacteria of Diamondback Moth, Plutella Xylostella (Linnaeus) (Lepidoptera: Yponomeutidae) Collected From Different Geographical Regions of India Mandeep Kaur ( [email protected] ) Dr Yashwant Singh Parmar University of Horticulture and Forestry https://orcid.org/0000-0002-6118- 9447 Meena Thakur Dr Yashwant Singh Parmar University of Horticulture and Forestry Vinay Sagar ICAR-CPRI: Central Potato Research Institute Ranjna Sharma Dr Yashwant Singh Parmar University of Horticulture and Forestry Research Article Keywords: Plutella xylostella, Bacteria, DNA, Phylogeny Posted Date: May 25th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-510613/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/15 Abstract Diamondback moth, Plutella xylostella is one of the important pests of cole crops, the larvae of which cause damage to leaves from seedling stage to the harvest thus reducing the quality and quantity of the yield. The insect gut posses a large variety of microbial communities among which, the association of bacteria is the most spread and common. Due to variations in various agro-climatic factors, the insect often assumes the status of major pest. These geographical variations in insects inuence various biological parameters including insecticide resistance due to diversity of microbes/bacteria. The diverse role of gut bacteria in insect tness traits has now gained perspectives for biotechnological exploration. The present study was aimed to determine the diversity of larval gut bacteria of diamondback moth collected from ve different geographical regions of India. The gut bacteria of this pest were found to be inuenced by different geographical regions. -
Unsafe €Œcrossover-Use― of Chloramphenicol in Uganda
The Journal of Antibiotics (2021) 74:417–420 https://doi.org/10.1038/s41429-021-00416-3 BRIEF COMMUNICATION Unsafe “crossover-use” of chloramphenicol in Uganda: importance of a One Health approach in antimicrobial resistance policy and regulatory action 1,2 1,2 3 1 1 Kayley D. McCubbin ● John W. Ramatowski ● Esther Buregyeya ● Eleanor Hutchinson ● Harparkash Kaur ● 3 2 1 Anthony K. Mbonye ● Ana L. P. Mateus ● Sian E. Clarke Received: 22 December 2020 / Revised: 2 February 2021 / Accepted: 16 February 2021 / Published online: 19 March 2021 © The Author(s) 2021. This article is published with open access Abstract Since the introduction of antibiotics into mainstream health care, resistance to these drugs has become a widespread issue that continues to increase worldwide. Policy decisions to mitigate the development of antimicrobial resistance are hampered by the current lack of surveillance data on antibiotic product availability and use in low-income countries. This study collected data on the antibiotics stocked in human (42) and veterinary (21) drug shops in five sub-counties in Luwero district of Uganda. Focus group discussions with drug shop vendors were also employed to explore antibiotic use practices in the 1234567890();,: 1234567890();,: community. Focus group participants reported that farmers used human-intended antibiotics for their livestock, and community members obtain animal-intended antibiotics for their own personal human use. Specifically, chloramphenicol products licensed for human use were being administered to Ugandan poultry. Human consumption of chloramphenicol residues through local animal products represents a serious public health concern. By limiting the health sector scope of antimicrobial resistance research to either human or animal antibiotic use, results can falsely inform policy and intervention strategies. -
2020 Antibiotic Reference Guide Trade to Generic
2020 ANTIBIOTIC REFERENCE GUIDE TRADE TO GENERIC Listing Alphabetically by Trade Name1 Indications2 Route of Administration Trade Names Manufacturer Generic Name Abbreviations* Gram + Gram - PO IM IV Topical Aktob Akorn Tobramycin To, TO, NN, TM, TOB • • Amikin Apothecon Amikacin Ak, AK, AN, AMI, AMK • • • Amoxil GlaxoSmithKline Amoxicillin AMX, Amx, AMOX, AC • • • Ancef GlaxoSmithKline Cefazolin Cfz, CFZ, CZ, FAZ, KZ • • • • Arestin Orapharma Minocycline Min, MIN, MI, MN, MNO, MC, MH • • • Atridox Tolmar Doxycycline Dox, DOX, DC, DOXY • • • Augmentin GlaxoSmithKline Amoxicillin-clavulanic acid AMC, Amc, A/C, AUG, Aug, XL, AML • • • Avelox Bayer Moxifloxacin Mox, MXF • • • Avycaz Allergan Ceftazidime-avibactam CZA • • Azactam Bristol-Myers Squibb Aztreonam Azt, AZT, ATM, AT, AZM • • • Bactocill GlaxoSmithKline Oxacillin Ox, OX, OXS, OXA • • Bactrim Mutual Trimethoprim-sulfamethoxaxole T/S, SXT, SxT, TS, COT • • • Bactroban GlaxoSmithKline Mupirocin MUP, MOP, MU • • Baxdela Melinta Delafloxacin DFX • • • • Biaxin Abbvie Inc. Clarithromycin Cla, CLA, CLR, CLM, CH • • • Cedax Shionogi Ceftibuten CTB, TIB, CB • • • Cefaclor Multiple companies Cefaclor CCL, CEC, Cfr, FAC, CF • • • Cefizox Astellas Ceftizoxime Cz, ZOX, CZX, CZ, CTZ, TIZ • • • Cefobid Pfizer Cefoperazone Cfp, CFP, CPZ, PER, FOP, CP • • • Cefotan AstraZeneca Cefotetan Ctn, CTN, CTT, CTE, TANS, CN • • • • Ceftin GlaxoSmithKline Cefuroxime Crm, CXM, CFX, ROX, FUR, XM • • Cefzil Bristol-Myers Squibb Cefprozil CPZ, CPR, FP • • • Centany J&J Mupirocin MUP, MOP, MU • • Chloromycetin -
In Vitro Activity of Eravacycline and Comparator Antimicrobials Against
In Vitro Activity of Eravacycline and comparator antimicrobials *Presenting Author: against 143 recent strains of Bacteroides species Diane M. Citron 1209 [email protected] Diane M. Citron, Kerin L. Tyrrell, and Ellie J. C. Goldstein R. M. Alden Research Laboratory, Culver City, CA 90230 Introduction Results Discussion Eravacycline (ERV) is a novel, fully-synthetic fluorocycline antibiotic in Resistance to tetracycline has become common among Bacteroides species and Table 1. In vitro activity (µg/ml) of eravacycline and comparators development for the treatment of serious infections, including those caused by the MIC90 for all of the strains was >32 µg/ml. Eravacycline was four- to eight- multidrug-resistant (MDR) pathogens. ERV recently completed phase 3 clinical against Bacteroides species. All results for the quality control fold more active than tigecycline against these strains with MIC at 1–4 µg/ml. strains were within acceptable CLSI ranges (4). 90 development for the treatment of complicated intra-abdominal infections (cIAI) Eravacycline was active against several strains that showed resistance to and is in phase 3 clinical development for complicated urinary tract infections piperacillin-tazobactam and meropenem. (cUTI), including pyelonephritis. Organism (no.) / Agent Range MIC MIC 50 90 Resistance to clindamycin was also common and all of these strains were ERV has potent activity against a broad range of Gram-positive, Gram- B. caccae (10) Eravacycline 0.25–4 0.5 2 susceptible to eravacycline. negative and anaerobic pathogens. Like other tetracyclines, ERV inhibits protein Tigecycline 0.25–16 4 16 Metronidazole resistance was not encountered in this group of isolates, although, synthesis by binding to the 30S ribosomal subunit. -
Lactamase-Producing Carbapenem-Resistant Enterobacteriaceae (CRE) to Eravacycline
The Journal of Antibiotics (2016) 69, 600–604 & 2016 Japan Antibiotics Research Association All rights reserved 0021-8820/16 www.nature.com/ja ORIGINAL ARTICLE In vitro susceptibility of β-lactamase-producing carbapenem-resistant Enterobacteriaceae (CRE) to eravacycline Yunliang Zhang, Xiaoyan Lin and Karen Bush Eravacycline is a novel, fully synthetic fluorocycline antibiotic of the tetracycline class being developed for the treatment of complicated urinary tract infections and complicated intra-abdominal infections. Eravacycline has activity against many key Gram-negative pathogens, including Enterobacteriaceae resistant to carbapenems, cephalosporins, fluoroquinolones and β-lactam/β-lactamase inhibitor combinations, including strains that are multidrug-resistant. Carbapenem-resistant Enterobacteriaceae (CRE) isolates from 2010 to 2013 (n = 110) were characterized for carbapenemase genes by PCR and sequencing. MICs for eravacycline, tetracycline, tigecycline, amikacin, imipenem, ceftazidime, cefotaxime and levofloxacin were determined in broth microdilution assays. All isolates produced at least one carbapenemase, most frequently KPC-3. Nine isolates produced both a KPC serine carbapenemase and a metallo-β-lactamase, NDM-1 (n = 1) or VIM-1 (n = 8). The 110 isolates were highly resistant to all the β-lactams tested and to levofloxacin, and had MIC50/MIC90 values in the intermediate − 1 − 1 range for tetracycline and amikacin. MIC50/MIC90 values for eravacycline were 1/2 μgml compared with 2/2 μgml for tigecycline. Eravacycline MICs were often twofold lower than for tigecycline, with 64% of the eravacycline MICs o2 μgml− 1 as compared with o4% of tigecycline MICs. Overall, eravacycline demonstrated the lowest cumulative MICs against this panel of recent CRE and may have the potential to treat infections caused by CRE. -
Sivextro (Tedizolid Phosphate)
___________________ ______________ HIGHLIGHTS OF PRESCRIBING INFORMATION CONTRAINDICATIONS These highlights do not include all the information needed to TM None (4) use SIVEXTRO safely and effectively. See full prescribing _______________ __________ information for SIVEXTRO. WARNINGS AND PRECAUTIONS • Patients with neutropenia: The safety and efficacy of SIVEXTRO (tedizolid phosphate) for injection, for SIVEXTRO in patients with neutropenia (neutrophil counts intravenous use <1000 cells/mm3) have not been adequately evaluated. In an SIVEXTRO (tedizolid phosphate) tablet, for oral use animal model of infection, the antibacterial activity of SIVEXTRO was reduced in the absence of granulocytes. Initial U.S. Approval: 2014 Consider alternative therapies in neutropenic patients. (5.1) _________________ _________________ • Clostridium difficile-associated diarrhea: Evaluate if diarrhea INDICATIONS AND USAGE occurs. (5.2) SIVEXTRO is an oxazolidinone-class antibacterial drug indicated ___________________ ADVERSE REACTIONS ______________ in adults for the treatment of acute bacterial skin and skin structure infections (ABSSSI) caused by designated susceptible bacteria. (1) The most common adverse reactions (>2%) are nausea, headache, diarrhea, vomiting, and dizziness. (6) To reduce the development of drug-resistant bacteria and maintain the effectiveness of SIVEXTRO and other antibacterial drugs, SIVEXTRO should be used only to treat or prevent infections that To report SUSPECTED ADVERSE REACTIONS, contact are proven or strongly suspected to be caused by bacteria. Cubist Pharmaceuticals at 1-877-282-4786 or FDA at 1-800 ______________ DOSAGE AND ADMINISTRATION ______________ FDA -1088 or www.fda.gov/medwatch. 200 mg administered once daily orally or as an intravenous (IV) ________________________________________________________ infusion over 1 hour for six (6) days. (2.1) ______________DOSAGE FORMS AND STRENGTHS _____________ See 17 for PATIENT COUNSELING INFORMATION.