Reciprocal Regulation of Arfgap1 by LRRK2
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LRRK2 at the Crossroad of Aging and Parkinson's Disease
G C A T T A C G G C A T genes Review LRRK2 at the Crossroad of Aging and Parkinson’s Disease Eun-Mi Hur 1 and Byoung Dae Lee 2,3,* 1 Department of Neuroscience, College of Veterinary Medicine, Research Institute for Veterinary Science and BK21 Four Future Veterinary Medicine Leading Education & Research Center, Seoul National University, Seoul 08826, Korea; [email protected] 2 Department of Physiology, Kyung Hee University School of Medicine, Seoul 02447, Korea 3 Department of Neuroscience, Kyung Hee University, Seoul 02447, Korea * Correspondence: [email protected]; Tel.: +82-2-961-9381 Abstract: Parkinson’s disease (PD) is a heterogeneous neurodegenerative disease characterized by the progressive loss of dopaminergic neurons in the substantia nigra pars compacta and the widespread occurrence of proteinaceous inclusions known as Lewy bodies and Lewy neurites. The etiology of PD is still far from clear, but aging has been considered as the highest risk factor influencing the clinical presentations and the progression of PD. Accumulating evidence suggests that aging and PD induce common changes in multiple cellular functions, including redox imbalance, mitochondria dysfunction, and impaired proteostasis. Age-dependent deteriorations in cellular dysfunction may predispose individuals to PD, and cellular damages caused by genetic and/or environmental risk factors of PD may be exaggerated by aging. Mutations in the LRRK2 gene cause late-onset, autosomal dominant PD and comprise the most common genetic causes of both familial and sporadic PD. LRRK2-linked PD patients show clinical and pathological features indistinguishable from idiopathic PD patients. Here, we review cellular dysfunctions shared by aging and PD-associated LRRK2 mutations and discuss how the interplay between the two might play a role in PD pathologies. -
Harnessing Gene Expression Profiles for the Identification of Ex Vivo Drug
cancers Article Harnessing Gene Expression Profiles for the Identification of Ex Vivo Drug Response Genes in Pediatric Acute Myeloid Leukemia David G.J. Cucchi 1 , Costa Bachas 1 , Marry M. van den Heuvel-Eibrink 2,3, Susan T.C.J.M. Arentsen-Peters 3, Zinia J. Kwidama 1, Gerrit J. Schuurhuis 1, Yehuda G. Assaraf 4, Valérie de Haas 3 , Gertjan J.L. Kaspers 3,5 and Jacqueline Cloos 1,* 1 Hematology, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands; [email protected] (D.G.J.C.); [email protected] (C.B.); [email protected] (Z.J.K.); [email protected] (G.J.S.) 2 Department of Pediatric Oncology/Hematology, Erasmus MC–Sophia Children’s Hospital, 3015 CN Rotterdam, The Netherlands; [email protected] 3 Princess Máxima Center for Pediatric Oncology, 3584 CS Utrecht, The Netherlands; [email protected] (S.T.C.J.M.A.-P.); [email protected] (V.d.H.); [email protected] (G.J.L.K.) 4 The Fred Wyszkowski Cancer Research, Laboratory, Department of Biology, Technion-Israel Institute of Technology, 3200003 Haifa, Israel; [email protected] 5 Emma’s Children’s Hospital, Amsterdam UMC, Vrije Universiteit Amsterdam, Pediatric Oncology, 1081 HV Amsterdam, The Netherlands * Correspondence: [email protected] Received: 21 April 2020; Accepted: 12 May 2020; Published: 15 May 2020 Abstract: Novel treatment strategies are of paramount importance to improve clinical outcomes in pediatric AML. Since chemotherapy is likely to remain the cornerstone of curative treatment of AML, insights in the molecular mechanisms that determine its cytotoxic effects could aid further treatment optimization. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Pleiotropic Effects for Parkin and LRRK2 in Leprosy Type-1 Reactions and Parkinson’S Disease
Pleiotropic effects for Parkin and LRRK2 in leprosy type-1 reactions and Parkinson’s disease Vinicius M. Favaa,b,1,2, Yong Zhong Xua,b, Guillaume Lettrec,d, Nguyen Van Thuce, Marianna Orlovaa,b, Vu Hong Thaie, Shao Taof,g, Nathalie Croteauh, Mohamed A. Eldeebi, Emma J. MacDougalli, Geison Cambrij, Ramanuj Lahirik, Linda Adamsk, Edward A. Foni, Jean-François Trempeh, Aurélie Cobatl,m, Alexandre Alcaïsl,m, Laurent Abell,m,n, and Erwin Schurra,b,o,1,2 aProgram in Infectious Diseases and Immunity in Global Health, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada H4A3J1; bMcGill International TB Centre, Montreal, QC, Canada H4A 3J1; cMontreal Heart Institute, Montreal, QC, Canada H1T 1C8; dDepartment of Medicine, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada H3T 1J4; eHospital for Dermato-Venereology, District 3, Ho Chi Minh City, Vietnam; fDivision of Experimental Medicine, Faculty of Medicine, McGill University, Montreal, QC, Canada H3G 2M1; gThe Translational Research in Respiratory Diseases Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada H4A 3J1; hCentre for Structural Biology, Department of Pharmacology & Therapeutics, McGill University, Montreal, QC, Canada H3G 1Y6; iMcGill Parkinson Program, Neurodegenerative Diseases Group, Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, QC, Canada H3A 2B4; jGraduate Program in Health Sciences, Pontifícia Universidade Católica do Paraná, Curitiba, PR, 80215-901, Brazil; kNational Hansen’s Disease Program, Health Resources and Services Administration, Baton Rouge, LA 70803; lLaboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale 1163, 75015 Paris, France; mImagine Institute, Paris Descartes-Sorbonne Paris Cité University, 75015 Paris, France; nSt. -
Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer
Published OnlineFirst January 18, 2012; DOI: 10.1158/1078-0432.CCR-11-1539 Clinical Cancer Imaging, Diagnosis, Prognosis Research Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer Timothy R. Donahue1,2,3,4, Linh M. Tran2,3, Reginald Hill2,3, Yunfeng Li2,3, Anne Kovochich5, Joseph H. Calvopina3, Sanjeet G. Patel1, Nanping Wu2,3, Antreas Hindoyan2,3, James J. Farrell6, Xinmin Li5, David W. Dawson4,5, and Hong Wu2,3,4,7 Abstract Purpose: To carry out an integrative profile of human pancreatic ductal adenocarcinoma (PDAC) to identify prognosis-significant genes and their related pathways. Experimental Design: A concordant survival-based whole genome in silico array analysis of DNA copy number, and mRNA and miRNA expression in 25 early-stage PDAC was carried out. A novel composite score simultaneously integrated gene expression with regulatory mechanisms to identify the signature genes with the most levels of prognosis-significant evidence. The predominant signaling pathways were determined via a pathway-based approach. Independent patient cohorts (n ¼ 148 and 42) were then used as in vitro validation of the array findings. Results: The composite score identified 171 genes in which expressions were able to define two prognosis subgroups (P ¼ 3.8e-5). Eighty-eight percent (151 of 171) of the genes were regulated by prognosis-significant miRNAs. The phosphoinositide 3-kinase/AKT pathway and SRC signaling were densely populated by prognosis-significant genes and driven by genomic amplification of SRC and miRNA regulation of p85a and CBL. On tissue microarray validation (n ¼ 148), p85a protein expression was associated with improved survival for all patients (P ¼ 0.02), and activated P-SRC (Y418) was associated shorter survival for patients with low-grade histology tumors (P ¼ 0.04). -
LRRK2) Inhibitors Using a Crystallographic Surrogate Derived from Checkpoint Kinase 1 (CHK1
This is a repository copy of Design of Leucine-Rich Repeat Kinase 2 (LRRK2) Inhibitors Using a Crystallographic Surrogate Derived from Checkpoint Kinase 1 (CHK1). White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/130583/ Version: Accepted Version Article: Williamson, Douglas S., Smith, Garrick P., Acheson-Dossang, Pamela et al. (20 more authors) (2017) Design of Leucine-Rich Repeat Kinase 2 (LRRK2) Inhibitors Using a Crystallographic Surrogate Derived from Checkpoint Kinase 1 (CHK1). JOURNAL OF MEDICINAL CHEMISTRY. pp. 8945-8962. ISSN 0022-2623 https://doi.org/10.1021/acs.jmedchem.7b01186 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Design of LRRK2 inhibitors using a CHK1-derived crystallographic surrogate Douglas S. Williamson,†* Garrick P. Smith,‡ Pamela Acheson-Dossang,† Simon T. Bedford,† Victoria Chell,† I-Jen Chen,† Justus C. A. Daechsel,‡ Zoe Daniels,† Laurent David,‡ Pawel Dokurno,† Morten Hentzer,‡ Martin C. Herzig,‡ Roderick E. -
Elucidating the Host Interactome of EV-A71 2C Reveals Viral Dependency Factors
fmicb-10-00636 March 29, 2019 Time: 18:51 # 1 ORIGINAL RESEARCH published: 02 April 2019 doi: 10.3389/fmicb.2019.00636 Elucidating the Host Interactome of EV-A71 2C Reveals Viral Dependency Factors Ye Li1†, Xia Jian1†, Peiqi Yin1, Guofeng Zhu2 and Leiliang Zhang3* 1 NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China, 2 National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, and Key Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China, 3 Institute of Basic Medicine, Shandong Academy of Medical Sciences, Jinan, China Viral protein 2C plays a critical role in EV-A71 replication. The discovery of 2C binding proteins will likely provide potential targets to treat EV-A71 infection. Here, we provide a global proteomic analysis of the human proteins that interact with the EV-A71 2C protein. TRIM4, exportin2, and ARFGAP1 were validated as 2C binding partners. Further functional studies revealed that TRIM4, exportin2, and ARFGAP1 were novel host Edited by: dependency factors for EV-A71. Moreover, enteroviruses’ 2C family proteins interacted Ju-Tao Guo, with exportin2 and ARFGAP1. In conclusion, our study provides a cellular interactome Baruch S. Blumberg Institute, United States of the EV-A71 2C and identifies the proviral roles of TRIM4, exportin2, and ARFGAP1 in Reviewed by: EV-A71 infection. Ping Zhao, Second Military Medical University, Keywords: EV-A71, 2C, TRIM4, exportin2, ARFGAP1 China Ke Lan, State Key Laboratory of Virology, INTRODUCTION Wuhan University, China *Correspondence: Enterovirus A71 (EV-A71) is one of the major pathogens that leads to hand, foot and mouth disease Leiliang Zhang (HFMD) in young children and infants, and has become a serious threat to global public health [email protected] (Baggen et al., 2018). -
ISS National Lab Q1FY19 Report Quarterly Report for the Period October 1 – December 31, 2018
NASAWATCH.COM ISS National Lab Q1FY19 Report Quarterly Report for the Period October 1 – December 31, 2018 Contents Q1FY19 Metrics ........................................................................................................................................... 2 Key Portfolio Data Charts ............................................................................................................................. 6 Program Successes ...................................................................................................................................... 6 In-Orbit Activities ........................................................................................................................................ 7 Research Solicitations in Progress ................................................................................................................ 7 Appendix .................................................................................................................................................... 8 Authorized for submission to NASA by: _______________________________ Print Name _______________ Signature ________________________________________________________ 1 NASAWATCH.COM NASAWATCH.COM ISS National Lab Q1FY19 Report Q1FY19 Metrics SECURE STRATEGIC FLIGHT PROJECTS: Generate significant, impactful, and measurable demand from customers that recognize value of the ISS National Lab as an innovation platform TARGET ACTUAL Q1 ACTUAL Q2 ACTUAL Q3 ACTUAL Q4 YTD FY19 FY19 ISS National Lab payloads manifested -
Genes Implicated in Familial Parkinson's Disease Provide a Dual
International Journal of Molecular Sciences Review Genes Implicated in Familial Parkinson’s Disease Provide a Dual Picture of Nigral Dopaminergic Neurodegeneration with Mitochondria Taking Center Stage Rafael Franco 1,2,† , Rafael Rivas-Santisteban 1,2,† , Gemma Navarro 2,3,† , Annalisa Pinna 4,*,† and Irene Reyes-Resina 1,†,‡ 1 Department Biochemistry and Molecular Biomedicine, University of Barcelona, 08028 Barcelona, Spain; [email protected] (R.F.); [email protected] (R.R.-S.); [email protected] (I.R.-R.) 2 Centro de Investigación Biomédica en Red Enfermedades Neurodegenerativas (CiberNed), Instituto de Salud Carlos III, 28031 Madrid, Spain; [email protected] 3 Department Biochemistry and Physiology, School of Pharmacy and Food Sciences, University of Barcelona, 08028 Barcelona, Spain 4 National Research Council of Italy (CNR), Neuroscience Institute–Cagliari, Cittadella Universitaria, Blocco A, SP 8, Km 0.700, 09042 Monserrato (CA), Italy * Correspondence: [email protected] † These authors contributed equally to this work. ‡ Current address: RG Neuroplasticity, Leibniz Institute for Neurobiology, Brenneckestr 6, 39118 Magdeburg, Germany. Abstract: The mechanism of nigral dopaminergic neuronal degeneration in Parkinson’s disease (PD) Citation: Franco, R.; Rivas- is unknown. One of the pathological characteristics of the disease is the deposition of α-synuclein Santisteban, R.; Navarro, G.; Pinna, (α-syn) that occurs in the brain from both familial and sporadic PD patients. This paper constitutes a A.; Reyes-Resina, I. Genes Implicated narrative review that takes advantage of information related to genes (SNCA, LRRK2, GBA, UCHL1, in Familial Parkinson’s Disease VPS35, PRKN, PINK1, ATP13A2, PLA2G6, DNAJC6, SYNJ1, DJ-1/PARK7 and FBXO7) involved in Provide a Dual Picture of Nigral familial cases of Parkinson’s disease (PD) to explore their usefulness in deciphering the origin of Dopaminergic Neurodegeneration dopaminergic denervation in many types of PD. -
Structural Model of the Dimeric Parkinson's Protein LRRK2
Structural model of the dimeric Parkinson’s protein PNAS PLUS LRRK2 reveals a compact architecture involving distant interdomain contacts Giambattista Guaitolia,b,1, Francesco Raimondic,d,1, Bernd K. Gilsbacha,e,f,1, Yacob Gómez-Llorenteg,1, Egon Deyaerth,i,1, Fabiana Renzig, Xianting Lij, Adam Schaffnerg,j, Pravin Kumar Ankush Jagtapk,l, Karsten Boldtb, Felix von Zweydorfa,b, Katja Gotthardtf, Donald D. Lorimerm, Zhenyu Yuej, Alex Burginn, Nebojsa Janjico, Michael Sattlerk,l, Wim Verséesh,i, SEE COMMENTARY Marius Ueffingb,2, Iban Ubarretxena-Belandiag,2,3, Arjan Kortholte,2,3, and Christian Johannes Gloecknera,b,2,3 aGerman Center for Neurodegenerative Diseases, 72076 Tübingen, Germany; bCenter for Ophthalmology, Institute for Ophthalmic Research, Eberhard Karls University, 72076 Tübingen, Germany; cDepartment of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy; dCell Networks, University of Heidelberg, 69120 Heidelberg, Germany; eDepartment of Cell Biochemistry, University of Groningen, Groningen 9747 AG, The Netherlands; fStructural Biology Group, Max Planck Institute for Molecular Physiology, 44227 Dortmund, Germany; gDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029; hStructural Biology Brussels, Vrije Universiteit Brussel, 1050 Brussels, Belgium; iVlaams Instituut voor Biotechnologie, Structural Biology Research Center, Vrije Universiteit Brussel, 1050 Brussels, Belgium; jDepartments of Neurology and Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029; kCenter for Integrated Protein Science Munich at Department of Chemistry, Technische Universität München, 85747 Garching, Germany; lInstitute of Structural Biology, Helmholtz Zentrum München, 85764 Munich, Germany; mBeryllium Discovery Corporation, Bainbridge Island, WA 98110; nBroad Institute, Cambridge, MA 02142; and oSomaLogic, Boulder, CO 80301 Edited by Quyen Q. -
LRRK2 GENETICS and EXPRESSION in the PARKINSONIAN BRAIN Thesis Submitted in Fulfilment of the Degree of Doctor of Philosophy
LRRK2 GENETICS AND EXPRESSION IN THE PARKINSONIAN BRAIN Thesis submitted in fulfilment of the degree of Doctor of Philosophy 2010 Queen Square Brain Bank, Department of Molecular Neuroscience, Institute of Neurology & Institute of Human Genetics and Health, University College London Simone Sharma Declaration I hereby declare that the work described in this thesis is solely that of the author, unless stated otherwise in the text. None of the work has been submitted for any other qualification at this or any other university. Simone Sharma Abstract Mutations in LRRK2 have been established as a common genetic cause of Parkinson’s disease (PD). Variation in gene expression of PARK loci has previously been demonstrated in PD pathogenesis, although it has not been described in detail for LRRK2 expression in the human brain. This study further elucidates the role of LRRK2 in development of PD by describing an investigation into the role of LRRK2 genetics and expression in the human brain. The G2019S mutation is a common LRRK2 mutation that exhibits a clinical and pathological phenotype indistinguishable from idiopathic PD. Thus, the study of G2019S mutation is a recurrent theme. The frequency of G2019S was estimated in unaffected subjects that lived or shared a cultural heritage to the predicted founding populations of the mutation, and was found not to be common in these populations. Morphological analysis revealed a ubiquitous expression for LRRK2 mRNA and protein in the human brain. In-situ hybridisation data suggests that LRRK2 mRNA is present as a low copy number mRNA in the human brain. A semi-quantitative analysis of LRRK2 immunohistochemistry revealed extensive regional variation in the LRRK2 protein levels, although the weakest immunoreactivity was consistently identified in the nigrostriatal dopamine region. -
Comprehensive Analysis of the LRRK2 Gene in Sixty Families with Parkinson’S Disease
European Journal of Human Genetics (2006) 14, 322–331 & 2006 Nature Publishing Group All rights reserved 1018-4813/06 $30.00 www.nature.com/ejhg ARTICLE Comprehensive analysis of the LRRK2 gene in sixty families with Parkinson’s disease Alessio Di Fonzo1,25, Cristina Tassorelli2, Michele De Mari3, Hsin F. Chien4, Joaquim Ferreira5, Christan F. Rohe´1, Giulio Riboldazzi6, Angelo Antonini7, Gianni Albani8, Alessandro Mauro8,9, Roberto Marconi10, Giovanni Abbruzzese11, Leonardo Lopiano9, Emiliana Fincati12, Marco Guidi13, Paolo Marini14, Fabrizio Stocchi15, Marco Onofrj16, Vincenzo Toni17, Michele Tinazzi18, Giovanni Fabbrini19, Paolo Lamberti3, Nicola Vanacore20, Giuseppe Meco19, Petra Leitner21, Ryan J. Uitti22, Zbigniew K. Wszolek22, Thomas Gasser21, Erik J. Simons23, Guido J. Breedveld1, Stefano Goldwurm7, Gianni Pezzoli7, Cristina Sampaio5, Egberto Barbosa4, Emilia Martignoni24,26 Ben A. Oostra1, Vincenzo Bonifati*,1,19, and The Italian Parkinson Genetics Network27 1Department of Clinical Genetics, Erasmus MC Rotterdam, Rotterdam, The Netherlands; 2Institute IRCCS ‘Mondino’, Pavia, Italy; 3Department of Neurology, University of Bari, Bari, Italy; 4Department of Neurology, University of Sa˜o Paulo, Sa˜o Paulo, Brazil; 5Neurological Clinical Research Unit, Institute of Molecular Medicine, Lisbon, Portugal; 6Department of Neurology, University of Insubria, Varese, Italy; 7Parkinson Institute, Istituti Clinici di Perfezionamento, Milan, Italy; 8Department of Neurology, IRCCS ‘Istituto Auxologico Italiano’, Piancavallo, Italy; 9Department