AGE AND SIZE SELECTIVITY OF THE GASPEREAU RIVER ALEWIFE FISHERY:
IMPLICATIONS FOR THE ASSESSMENT OF THIS STOCK
by
Mark C. Billard
Thesis submitted in partial fulfillment of the
requirements for the Degree of
Bachelor of Science with
Honours in Biology
Acadia University
April 17, 2017
© Copyright by Mark C. Billard, 2017
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This thesis by Mark C. Billard
is accepted in its present form by the
Department of Biology
as satisfying the thesis requirements for the degree of
Bachelor of Science with Honours
Approved by the Thesis Supervisors
______Dr. Anna Redden Date
______Dr. Jamie Gibson Date
Approved by the Head of the Department
______Dr. Brian Wilson Date
Approved by the Chair of the Honours Committee
______Dr. Jun Yang Date
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I, Mark C. Billard, grant permission to the University Librarian at Acadia University to reproduce, loan or distribute copies of my thesis in microform, paper or electronic formats on a non-profit basis. I, however, retain the copyright in my thesis.
______Signature of Author
______Date
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ACKNOWLEDGEMENTS
I would like to thank my supervisors, Dr. Jamie Gibson and Dr. Anna Redden for their support and instruction with this project and thesis. Dr. Gibson’s lessons on fishery science, modeling, and R provided me with a great learning experience. I greatly appreciate the one-on-one lessons that have vastly improved my skills and knowledge on those matters. Dr. Redden’s support and encouragement were invaluable for completion of this project.
I would also like to thank my lab mate Michael Adams, students Lita O’Halloran and Connor Sanderson, and Heather Bowlby of Fisheries and Oceans Canada for their help with the field and lab work components for this project. I thank the Acadia Centre for Estuarine Research and Fisheries and Oceans Canada for providing funding and materials for this project, as well as the George Baker Tidal Energy and Environment
Scholarship for funding my studies. Thanks also goes to Nova Scotia Power for maintaining and providing access to the White Rock Fish Ladder, and to Peter Croft of the Gaspereau River Square Net Fishermen’s Association for providing alewife to sample at his fishing stand.
Finally, I would like to thank my friends and family for their support over the course of this project.
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TABLE OF CONTENTS
ACKNOWLEDGEMENTS ...... VII LIST OF TABLES ...... XI LIST OF FIGURES ...... XIII ABSTRACT ...... XV 1.0 INTRODUCTION ...... 1 1.1 FISHERIES ...... 2 1.1.1 Objectives of Fisheries Management ...... 3 1.2 STOCK ASSESSMENT ...... 4 1.2.1 Biological Reference Points ...... 5 1.2.2 Estimating Biological Reference Points ...... 7 1.2.3 Exploitation and Fishing Mortality ...... 10 1.3 SELECTIVITY OF FISHERIES ...... 11 1.3.1 Introduction to Selectivity ...... 11 1.3.2 Selectivity and Reference Points ...... 12 1.4 ALEWIFE ...... 15 1.4.1 Alewife Distribution ...... 16 1.4.2 Alewife Life Cycle ...... 16 1.4.3 Ecological Role of Alewife ...... 17 1.5 GASPEREAU RIVER ...... 18 1.5.1 Study Site Overview ...... 18 1.5.2 Previous and Current Alewife Studies ...... 18 1.5.3 Biological Reference Points for Gaspereau River Alewife ...... 19 1.5.4 Commercial Fishery ...... 20 1.6 OBJECTIVES ...... 21 2.0 METHODS ...... 23 2.1 SAMPLING OF BIOLOGICAL CHARACTERISTICS ...... 23 2.2 LABORATORY METHODS ...... 26 2.3 STATISTICS AND DATA ANALYSIS ...... 27 2.3.1 Abundance Estimate ...... 27 2.3.2 Weighting and Analyzing Biological Characteristics ...... 28 2.4 CALCULATION OF SELECTIVITY ...... 30 2.5 CALCULATION OF BIOLOGICAL REFERENCE POINTS WITH SELECTIVITY ...... 32 2.6 EXPLORING CAUSE OF SELECTIVITY ...... 34 3.0 RESULTS ...... 37 3.1 ABUNDANCE ESTIMATE ...... 37 3.2 EVIDENCE OF SELECTIVITY ...... 37 3.3 ESTIMATED SELECTIVITY CURVE ...... 38 3.4 EFFECTS OF SELECTIVITY ON REFERENCE POINTS ...... 39 3.5 EXPLORING THE CAUSE OF SELECTIVITY ...... 40 4.0 DISCUSSION ...... 41 4.1 SOURCES OF ERROR ...... 41
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4.2 EFFECTS ON REFERENCE POINTS ...... 41 4.3 EXPLORING CAUSES OF SELECTIVITY ...... 44 4.4 NATURAL VARIABILITY ...... 45 5.0 CONCLUSIONS ...... 47 REFERENCES ...... 49 TABLES ...... 53 FIGURES ...... 65
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LIST OF TABLES Table 1. Definitions of the reference points for alewife fisheries provided by Gibson and Myers (2003)………………………………………………………………………………………………………………..53
Table 2. Three assumed selectivities for the hypothetical marine fishery…………………….54
Table 3. Biological reference points for a hypothetical fish population exploited using three hypothetical selectivity scenarios……………………………………………………………………….55
Table 4. Biological reference points for the Gaspereau River alewife stock………………….56
Table 5. Start and end times of the five strata used for selection of video samples, as well as the total duration in hours of each stratum………………………………...…………………..56
Table 6. Historical summary of catch data, estimated escapement, estimated run size, and exploitation rate for alewife on the Gaspereau River, Nova Scotia………………………..57
Table 7. Summary statistics for the biological characteristics data for alewife sampled from the White Rock fish ladder and Gaspereau River fishery in 2016………………………….58
Table 8. Values for the boxplots characterizing fork length frequency distributions for Gaspereau River alewife……………………………………………………………………………………………….59
Table 9. Proportions-at-age, and numbers-at-age for the Gaspereau River alewife….....59
Table 10. Numbers-at-age, age-specific exploitation rates, age-specific instantaneous fishing mortality rates, and selectivity for age classes 3 through 6 for the Gaspereau River alewife stock……………………………………………………………………………………………………….60
Table 11. Biological reference points for the Gaspereau River alewife stock estimated under assumptions of a non-selective fishery, and a fishery that is selective……………….61
Table 12. Number of alewife and day of the spawning run for three peaks in abundance that occurred for the Gaspereau River alewife stock in 2016…………………………….…………61
Table 13. Weekly means and standard errors of fork length for the Gaspereau River alewife………………………………………………………………………………………………………………………….62
Table 14. Means and standard errors of fork length for the Gaspereau River alewife …63
Table 15. Means and standard errors of age for the Gaspereau River alewife..…….…….64
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LIST OF FIGURES Figure 1. A visual description of population dynamics for a hypothetical fishery……….…65
Figure 2. The relationship between the exploitation rate, U, and the instantaneous fishing mortality rate, F………………………………………………………………………………………………..66
Figure 3. Three selectivity curves used to illustrate the effects of selectivity on reference points for the hypothetical marine fish stock……………………………………………………………….67
Figure 4. Yield per recruit (YPR) curves for the hypothetical marine fish stock……………..68
Figure 5. Spawner biomass per recruit (SPR) curves for the hypothetical marine fish stock…………………………………………………………………………………………………………………………….69
Figure 6. A stock recruitment (SR) curve for the hypothetical marine fish stock ………….70
Figure 7. Map of the study area on the Gaspereau River in Nova Scotia, showing the sampling locations in this study…...... 71
Figure 8. Photos of the two study locations where data were collected during the 2016 Gaspereau River alewife spawning run...... 72
Figure 9. Stock status plot for the Gaspereau River alewife stock………………………………..73
Figure 10. Boxplots characterizing fork length frequency distributions for Gaspereau River alewife………...... 74
Figure 11. Comparison of the sex ratio for Gaspereau River alewife…………………………….75
Figure 12. Comparison of proportions of age classes and proportions of repeat spawners for Gaspereau River alewife…………...... 76
Figure 13. Comparison of the composition of the repeat spawning component based on the number of times fish had previously spawned for Gaspereau River alewife………..…77
Figure 14. Comparison of the selectivity curves age for Gaspereau River alewife…………78
Figure 15. Comparison of spawner biomass per recruit (SPR) curves for Gaspereau River alewife………...... 79
Figure 16. Comparison of yield per recruit (YPR) curves for Gaspereau River alewife…..80
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Figure 17. The spawner-recruit curve and replacement lines for the Gaspereau River alewife stock…………...... 81
Figure 18. Abundance plot for Gaspereau River alewife sampled at White Rock fish ladder and from the commercial fishery in 2016...... 82
Figure 19. Comparison of weekly means and standard errors for Gaspereau River alewife…………...... 83
Figure 20. A proportionate comparison of means and standard error of fork length for Gaspereau River alewife…………...... 84
Figure 21. A proportionate comparison of means and standard error of age for Gaspereau River alewife…………...... 85
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ABSTRACT Biological reference points are metrics based on the biological characteristics of a fish stock and its fishery. They provide the link between stock assessment and management objectives, and are used to gauge whether management objectives are being achieved. Age and size can influence the impacts of a specific harvest rate depending on whether younger, smaller or older, larger fish are being harvested. A fishery that is selective for certain age classes would have different biological reference points for the stock, and could require different management of the fishery. In this study, I examined the selectivity of a commercial alewife fishery on the Gaspereau River,
Nova Scotia. Alewife (Alosa pseudoharengus) is a diadromous, herring-like fish species that spawn in the rivers and lakes along the eastern seaboard of North America. Alewife are fished throughout their range as they return to their natal rivers to spawn. In spring
2016, biological characteristics, including weight, fork length, sex, and age data were collected from alewife sampled at a commercial fisher’s stand, and at a fish ladder 4 km upriver. Data were used to reconstruct numbers-at-age for the total run. Significant differences were found in mean fork length, weight, age, and proportion of repeat spawners between the two sampling locations, indicating that the fishery is highly selective. Selectivity was calculated for age classes three through six, incorporated into the calculations for the biological reference points for this fishery, and compared to existing biological reference points based on the assumption the fishery is non-selective.
Although this study shows the fishery is selective, effects on the biological reference points were minor, likely due to the absence of immature fish in the spawning run.
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1.0 Introduction
The role of fishery science is to study the nature of fish populations and their fisheries to ensure appropriate harvesting by the fisheries. Fishery stock assessments are the collection and analysis of various types of data from a fish stock to estimate stock status, and provide the scientific basis for the management of stocks (Hilborn and
Walters 1992). Biological reference points are reference values that can be compared to stock assessment results to determine the status of a stock (Gibson and Myers 2003a).
Biological reference points are based on the management objectives of the stock, the life-history characteristics of the population, and the characteristics of the fishery.
Management objectives of the stock are goals such as sustainable harvesting of the stock. The life-history characteristics include reproductive rates, maturity schedules, and natural mortality rates. Characteristics of the fishery include the instantaneous fishing mortality rate, indicative of the rate at which fish are removed from the stock, and the selectivity of the fishery, defined as the probability that fish of certain age or size classes are harvested by the fishery relative to other age or size classes. All these factors affect the sustainable harvesting of the population.
Alewife are a diadromous species of fish that are harvested throughout their range as they return to spawn each spring along the eastern seaboard of North America
(Loesch 1987). Alewife spawn alongside a similar species, blueback herring; these two species are collectively referred to as gaspereau or river herring (Loesch 1987). Stock assessments for river herring typically assume the fishery is non-selective, as selectivity
has not typically been calculated or included in models used for river herring (e.g. Gibson and Myers 2003a, ASMFC 2012). The goal of this thesis is to determine whether alewife fisheries are selective and the impact selectivity has on biological reference points for alewife stocks, and potentially the management of the stocks. The alewife fishery in the
Gaspereau River, Nova Scotia, was used as the study system for evaluating selectivity.
The following sections describe relevant aspects of fisheries management, fisheries models, and biological reference points. It also describes selectivity of a fishery, and discusses the causes of selectivity. Finally, an example is provided to show the impacts selectivity can have on a stock and its fishery.
1.1 Fisheries
Fish are an important resource for humans, ecologically and economically. As an economic resource, fish and other aquatic animals are caught for sustenance, bait, and other uses. Issues arise when fish are caught in such great numbers that there is a noticeable negative effect on the productivity of the population, or the stock is depleted.
Effects of overfishing include reduced yields from fisheries, with associated social and economic impacts, as well as effects on the ecosystem if the species is an important predator or prey. Due to the interconnectedness of aquatic environments, overfishing one population may significantly affect a different species or population in a different area, or in a different time (Swain and Sinclair 2000).
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1.1.1 Objectives of Fisheries Management
Fisheries management uses fisheries science to sustainably manage fish stocks, ensuring they are harvested and conserved at rates that will not deplete the stocks
(Hilborn and Walters 1992). For this study, a fish stock is defined as a population of a single fish species that reproduces together and has shared biological characteristics such as the reproductive rate, natural mortality rate, or maturity schedule (Gibson et al.
2016). Fisheries managers aim to fulfill many objectives when making decisions on a stock, and those objectives fall into four categories: biological, economic, recreational, and social (Hilborn and Walters 1992).
To meet these objectives, fisheries managers typically aim to ensure that a stock is being harvested in a way that produces, or does not exceed, maximum sustainable yield (MSY) (Hilborn and Walters 1992). MSY is defined as the maximum yield the fishery can harvest from the stock indefinitely (Hilborn and Walters 1992). Although there are exceptions, MSY can be very difficult to determine without exceeding MSY and potentially depleting the stock (Hilborn and Walters 1992). However, it is still a useful concept for managing fish stocks.
From an economic perspective, fisheries managers could aim to ensure that fishers have the highest profit margin possible from their harvests. For fishers, maximizing profits of a fishery is common sense. Operating a fishing boat or fleet has many fixed costs such as insurance or rent, and variable costs that depend on time fished, such as wages and fuel. Therefore, the cost of fishing rises from a base cost proportionally to the time fished. As well, the economic value of a fish decreases with as
3 additional fish are caught. In theory, there exists a point where an individual will produce the highest ratio of fish caught to operation costs, however, this point may not be near the MSY (Hilborn and Walters 1992). It should be noted that few fisheries are managed purely or primarily from an economic perspective.
In addition to fulfilling biological and economic goals, fisheries managers may aim to make a stock available to the public for recreation. Recreational fishing, such as sport fishing, can also provide non-essential sustenance for the public (Hilborn and Walters
1992).
From a social perspective, fisheries managers aim to have a stock that can provide subsistence and jobs for those people that rely on it. This can be difficult to achieve when a stock is overfished. The fisheries manager must make decisions that affect current jobs and conservation of the fish population (Hilborn and Walters 1992).
The Fisheries Act of Canada (Minister of Justice 1985) prioritizes the conservation of stock first, providing subsistence for First Nations communities second, and then providing for commercial and sport fisheries. In reality, it is a complex balancing act to fulfill these objectives in the most effective way possible for all the different stocks that exist (Hilborn and Walters 1992).
1.2 Stock Assessment
A stock assessment is the collection and analysis of different types of data from a fish stock to estimate stock status, and to predict future stock status (Hilborn and
Walters 1992). The data collected can indicate the relative or absolute abundance, the age structure of the stock, productivity of the stock, natural and fishing mortality rates of
4 the stock, and any other important indices of the stock (Wallace and Fletcher 2001). The results of a stock assessment can be compared to previously established biological reference points to estimate stock status (Hilborn and Walters 1992). Stock assessments serve as a source of information on the characteristics of the stock and fishery, including the fishing mortality rate, selectivity, or determinations of whether the stock is overexploited (Hilborn and Walters 1992). A stock assessment provides fisheries managers with biological information about the stock, which the managers can weigh against social and economic factors to determine the best management of the stock
(Hilborn and Walters 1992).
When harvesting a fish stock, it is important to be mindful of stock recruitment
(also called spawner-recruit) relationships. Stock recruitment relationships are the processes in which spawning adults will produce young, which will in turn be recruited into the fishery (Hilborn and Walters 1992). The relationship between spawners and recruits is not always obvious when observing landings data. However, an overfished population will typically exhibit clearer connections between spawners and recruits
(Hilborn and Walters 1992). Stock recruitment relationships are described in detail in
Section 1.2.2.
1.2.1 Biological Reference Points
Biological reference points (BRPs) are metrics based on the biological characteristics of a fish stock, the characteristics of the stock’s fishery, and objectives for managing the fishery (Caddy and Mahon 1995, Gibson and Myers 2003a). BRPs are used as reference values to determine the status of the stock and fishery by comparing
5 estimates of stock abundance or exploitation of the fishery to established BRPs. These indicate whether the stock is healthy, or possibly over-exploited, and are used to determine if management objectives are being achieved (Gibson and Myers 2003a).
Fisheries and Oceans Canada (DFO) has developed a framework that serves as a guide to help ensure fish stock are not overfished. Within this framework, stock status can be in the critical, cautious, or healthy zones (DFO 2006, DFO 2012). When a fish stock is in the healthy zone, there is no immediate danger and the stock can be harvested at or near MSY. When a fish stock is in the cautious zone there is a risk of harming the stock, and efforts should be made to promote growth of the stock, while still allowing harvesting to occur. When a fish stock is in the critical zone the productivity of the stock is sufficiently impaired to cause serious harm. When in the critical zone, efforts must be taken to rebuild the stock, and harvesting must be kept to the minimum possible (DFO 2006).
The Upper Stock Reference (USR) is the boundary between the cautious and healthy zones. The Lower Reference Point (LRP) is the boundary between the critical and cautious zones of a fish stock. A Target Reference Point (TRP) that is equal to or greater than the USR may be defined for the stock. The TRP is the level of abundance considered optimal to meet management objectives (DFO 2006). The default reference points for a stock set the LRP at 40% of the biomass at MSY (BMSY) and the USR at 80% BMSY (DFO
2012). As more information on a stock becomes available, these reference points may change.
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A Removal Reference (RR) is the rate at which fish are harvested from the population. The RR changes depending on stock status, and is always greater when in the healthy zone than when in the cautious or critical zones (DFO 2006). The reference point used is usually Fmsy, which is the instantaneous fishing mortality rate at MSY (DFO
2012). A Removal Reference Level (RRL) and Lower Removal Reference Level (LRRL) exist for some stocks (DFO 2006), and have been established for alewife in DFO’s Maritimes
Region (Gibson et al. 2016). If the corresponding fishing mortality rate of the fishery is above the RRL the fishery is being over exploited; if it is between RRL and LRRL it is fully exploited; and if it is less than LRRL the fishery is considered partially exploited (Gibson et al. 2016). A fishing mortality rate matching the RRL or slightly less than the RRL is generally desirable.
1.2.2 Estimating Biological Reference Points
BRPs can be generated for a stock using a variety of fisheries models. One such model is a production model consisting of three parts: a stock recruitment model (SR), a spawner biomass per recruit model (SPR), and a yield per recruit model (YPR), as described by Gibson and Myers (2003a).
A SR model can be used to model the stock recruitment relationship component of the population dynamics of a stock (Gibson and Myers 2003a). For stock recruitment relationships, “spawner” refers to all sexually mature adults that successfully spawn in a particular year, and “recruit” refers to all individuals of a specific age or stage within the resulting cohort. The age or stage of recruitment should be old enough that all density dependent processes have occurred but young enough that fish are still immature and
7 are not being captured in the fishery (Gibson and Myers 2003a). The rate at which spawners produce recruits is density dependent; for example, the commonly used
Beverton-Holt stock recruitment model shows that as more spawners enter the system more recruits are produced, however, fewer recruits are produced per spawner (Figure
1a, Hilborn and Walters 1992). The Beverton-Holt model has two parameters. The first parameter is the carrying capacity which is the number of recruits approached asymptotically as spawner abundance approaches infinity (Myers et al. 2001, Gibson and
Myers 2003b). The second parameter is the slope at the origin of the SR curve and is the maximum rate that spawners can produce recruits at low abundance in the absence of density dependence (Myers et al. 1999).
Recruits become spawners as they grow and reach maturity, processes that are assumed to be density independent (Gibson and Myers 2003a). As mortality rates increase, recruits will produce fewer spawners (Figure 1b). A replacement line, the slope of which is the inverse of the rate at which recruits produce spawners throughout their lives, can be used to characterize the population dynamics of a stock in conjunction with the stock recruitment relationship. The slope of the replacement line (Figure 1b) can be calculated with a SPR model. The SPR model describes how much spawning stock biomass is produced on average by a single recruit throughout its life for a given fishing mortality rate (Gibson and Myers 2003a).
The yield produced by each recruit can be described as a YPR model. The YPR model describes the yield for the fishery produced by an average recruit at any given
8 fishing mortality rate (Gibson and Myers 2003a). This production model is described in more detail in Section 2.5.
The production model can determine the values of BRPs when the stock is at equilibrium. A population is considered to be at equilibrium when the rate of recruits producing spawners is equal to the rate of spawners producing recruits (Figure 1c,
Gibson et al. 2016). If the mortality rate of spawners increases as shown by the shallower sloped line in Figure 1b, the number of recruits will decrease and the population will have a lower equilibrium point (Figure 1c). Stock recruitment relationships can be incorporated into models to describe the population dynamics of the stock.
Several BRPs can be calculated using the production model. Examples include various spawning stock biomass amounts or instantaneous fishing mortality rates.
SSBmsy, which is the spawning stock biomass that will produce MSY for the fishery, is an example, as well as SSB20%, which is the spawning stock biomass at 20% that of the equilibrium SSB at no fishing (Gibson and Myers 2003a). Instantaneous fishing mortality rate examples are Fmsy, the instantaneous fishing mortality rate that would produce MSY for the fishery and the SSBmsy, or Fcol, the instantaneous fishing mortality rate that would lead to the extirpation of the stock (Gibson and Myers 2003a). Reference points F25%,
F30%, and F35% represent the instantaneous fishing mortality rate when SPRF is 25-35% that of SPRF when F=0 (Gibson and Myers 2003a). It is common for the instantaneous fishing mortality rate BRPs to be expressed in terms of an exploitation rate. A variety of
BRPs can be generated from production models, as well as other models (Table 1,
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Gibson et al. 2016). The BRPs generated from the production model can be compared to information from stock assessments to inform management of a stock.
1.2.3 Exploitation and Fishing Mortality
The terms instantaneous fishing mortality rate F and exploitation rate U can be used interchangeably, but the values for each are not directly interchangeable. F comes from the simple differential equation model (Hilborn and Walters 1992):