Science, Technology and Innovation Exploiting the Excellence
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High Performance Computing and BD
High-Performance Computing and Big Data Challenge Dr Violeta Holmes Matthew Newall The University of Huddersfield Outline • High-Performance Computing – E-Infrastructure – Top500 -Tianhe-II – UoH experience: HPC resources and applications • Big Data – Hadoop – Case study: Close Call • Summary High-Performance Computing • The HPC and Big Data are new technologies vital for the advancement in science, business and industry. • ”High Performance Computing (HPC) and e- infrastructure in general are drivers of economic growth and societal well-being. They are also vital for maintaining international competitiveness in the generation of knowledge and its application.”(Kenway, Coveney, McGuire, Parchment, & Parsons, 2012) Where we were 50s-early 80s • Centralised computing facilities • Dummy Terminals • Punch cards • Batch Processing μ Processors • Allowed users to have “intelligent” machines under their table – Seen as an expensive typewriter – Few organisations and educational institutions had them • These machines were quickly overtaking Mainframes in price-performance factors, and later overtaking them in performance. 90s – early 2000 • Information on Demand - For the first time sharing and communicating became easy and quick. Where we are now • Efficient Multitasking Desktops • Capable Workstations • Mobile Devices – less capable Through the use of middlewares: • Clusters • Grids The 5th Utility Utility Computing/Cloud Computing/On- Demand Computing/Service Computing • The concept of just plugging in your problem into a computer system and getting results. • Defined as: “A large-scale distributed computing paradigm that is driven by economies of scale, in which a pool of abstracted virtualised, dynamically-scalable, managed computing power, storage, platforms and services are delivered on demand to external customers over the internet.” (Foster et al. -
Landscape Analysis
The UK’s research and innovation infrastructure: Landscape Analysis 3 Contents Executive summary 6 Chapter 1: Introduction 8 1.1 Scope and definition of research and innovation infrastructure 9 1.2 Infrastructure diversity 10 1.3 Scale and coverage 11 1.4 Questionnaire methodology, limitations and potential bias 13 Chapter 2: Overview of the landscape 15 2.1 The cross-disciplinary nature of infrastructures 17 2.2 Large scale multi-sector facilities 18 Chapter 3: Lifecycle 21 3.1 Concept 22 3.2 Current lifecycle landscape 23 3.3 Evolution of the landscape 26 3.4 Lifecycle and planning 26 Chapter 4: International collaboration and cooperation 28 4.1 International collaboration 29 4.2. Staffing 29 4.3 International user base 30 Chapter 5: Skills and staffing 32 5.1 Numbers 33 5.2 Roles 36 5.3 Staff diversity 36 Chapter 6: Operations 38 6.1 Set-up capital costs 39 6.2 Sources of funding 41 6.3 Primary funding source 42 Chapter 7: Measuring usage and capacity 43 7.1 Usage 44 7.2 Measuring capacity 45 7.3 Managing capacity 47 7.4 Barriers to performance 49 Chapter 8: Links to the economy 52 8.1 Working with businesses 53 Chapter 9: Biological sciences, health and food sector 56 9.1 Current landscape 57 9.2 Interdependency with e-infrastructure 63 9.3 Engagement with the wider economy 63 4 Chapter 10: Physical sciences and engineering sector 65 10.1 The current landscape 67 10.2 Characterising the sector 69 10.3 The importance of international collaboration 71 10.4 Impacts 71 Chapter 11: Social sciences, arts and humanities sector 73 11.1 Form -
Read the Newcastle University Economic Impact Report
ECONOMIC IMPACT REPORT Our economic impact Engagement Our and partnerships Students International Knowledge profile economy Business Research and engagement innovation Excellence with a Purpose CONTENTS Overview 1 Foreword 2 Our economic impact 5 Our students 6 Knowledge economy 8 Research and innovation 9 Business engagement 10 International profile 12 Engagement and partnerships 14 Case studies: 1: Rural sustainability 16 2: City futures 17 3: Employer engagement 18 4: Partnering with business 19 5: Showcasing creativity 20 The Economic Impact 1 of Newcastle University OVERVIEW Newcastle University was formally established in 1963, but can trace its roots to the School of Medicine and Surgery, which was founded in Newcastle upon Tyne in 1834. Today’s University is a thriving international community of 27,750 students and 5,780 staff, the majority of whom are based on our main city-centre campus and other sites around the city. In recent years, we have expanded our footprint to include two international campuses, in Malaysia and Singapore, which opened in 2011 and 2008 respectively, while our newest branch campus, Newcastle University London, opened in September 2015. The University is a member of the internationally renowned Russell Group, an association of 24 leading research-intensive universities in the UK, and of the N8 Research Partnership, which features the eight research-intensive universities in the North of England. We are ranked among the top 1% of world universities, according to the QS (Quacquarelli Symonds) World Rankings. In 2016, Newcastle became one of only 16 universities in the world, and one of two in the UK, to achieve Five Plus QS Stars in the first international assessment of its kind. -
Daresbury Open Week 2020 Free KS5 Masterclass Events 29Th and 30Th June 2020
Daresbury Open Week 2020 Free KS5 Masterclass events 29th and 30th June 2020 As part of the Sci-Tech Daresbury Open Week, we are dedicating two full days delivering activities for school children from upper primary school through to upper secondary school. • Monday 29 June: Key Stage 2 & Key Stage 5 • Tuesday 30 June: Key Stage 3, Key Stage 4 & Key Stage 5 These exciting days of talks, tours and interactive workshops will fire your students’ imagination and inspire them about cutting edge science and technology, as well as STEM career opportunities. KS5 Workshop 1 Workshop: Electron Microscopy Be prepared to be taken to one of the world’s most powerful electron microscopes, located in the SuperSTEM facility here at Daresbury. Students will witness live data coming from the microscope that will enable them to visualise individual atoms. Students will complete hands-on activities that will teach them how and why we need to use electrons to produce these inspiring images. They will learn that the technological developments incorporated into the SuperSTEM microscopes form some of the most precise optics used in science. KS5 Workshop 2 Workshop: Scientific Computing Did you know that computational science and engineering is vital for research into complex fields such as the origins of life, how medicines work in cells within the body, and designing new materials that could help us live on Mars? Did you also know, that computational science and engineering has contributed to the development of many everyday items such as cosmetics, tablets and vacuum cleaners? Although covering many different topics, computational science and engineering always follows the same procedure, whether it is being used to explore the air flow over a vehicle or looking at how molecules attach themselves to proteins within cells. -
Template: 10Th Anniversary Powerpoint
Science and Technology Facilities Council One of Europe’s largest multi-disciplinary scientific research organisations Dr Ling Xu How we’re funded Taxpayers HM Government (and HM Treasury) STFC science and technology delivers real benefits to peoples’ lives, and contributes to the prosperity and security of the UK Delivering Economic Growth through Innovation STFC’s Asset Base Innovation Resilient Economy Knowledge Skills Technology Inspiration What we spend £530m from government in 2015-16* • International Subscriptions (CERN, ESO, ILL, ESRF, FAIR) £155m • Domestic Facilities (ISIS, Diamond, CLF) £156m • Core (academic grants, lab operations, support services) £218m • Supplemented by project-based external revenue around £60m p.a. International Facilities Core Revenue What we do World Class Research, Innovation and Skills • Broad range of physical, life and computational sciences • Around 1,700 scientists in particle and nuclear physics, and astronomy mainly in the University Sector • Access for 7,500 scientists to world-leading, large-scale facilities • Science and Innovation Campuses at Daresbury and Harwell • Globally-recognised capabilities and expertise in technology R&D • Inspiring young people to undertake STEM What we are Boulby Underground UK Astronomy Technology Centre Laboratory Edinburgh, Scotland North Yorkshire Polaris House Daresbury Laboratory Swindon, Wiltshire Sci-Tech Daresbury Warrington, Cheshire Chilbolton Observatory Rutherford Appleton Laboratory Stockbridge, Hampshire Harwell Didcot, Oxfordshire …and internationally Our facilities drive research Neutron Sources • Providing powerful insights into key areas of energy, biomedical research, climate, environment and security. High Power Lasers • Providing applications on bioscience and nanotechnology and demonstrating laser driven fusion as a future source of sustainable, clean energy. Light Sources • Providing new breakthroughs in medicine, environmental and materials science, engineering, electronics and cultural heritage. -
1 N8/Yorkshire Universities Joint Response to David
N8/YORKSHIRE UNIVERSITIES JOINT RESPONSE TO DAVID SWEENEY The N8 Research Partnership and Yorkshire Universities (YU) together represent 17 higher education institutions (HEIs) in the north of England. Our members make major contributions towards the UK’s research and innovation base. They are also critical institutions in supporting local and regional development, and act as key anchor institutions underpinning place-making in many cities, towns and communities across the north. We welcome the questions posed by David Sweeney, Executive Chair of Research England, in his recent blog for WonkHE1. This joint response by N8 and YU represents a contribution to the important debate about the role of place in research and innovation policy, strategy and funding in the UK. Executive Summary: • Research capacity and funding is not sufficiently spatially distributed in the UK. This reinforces imbalances and inequalities in the UK economy, and is an opportunity cost for UK Productivity and R&D targets. • In order to address this, there needs to be a greater emphasis on place and developing regional R&I ecosystems, which engage partners in the public and private sectors, as well as local citizens; • Definitions of excellence should be reviewed reflecting value of collaborative research which is locally embedded and impactful. Conventional peer review methods, which are accustomed to traditional measures of excellence, may need to be reviewed for funding schemes for which other factors are also strategically important; • Programmes should not be one-size fits all, but informed by regional knowledge. The approach should be flexible and long-term; • To make transformational change, SIPF awards could usefully be significantly larger and longer in duration; • Building capacity and local knowledge could be supported by developing new place-based collaborative research models, disseminating knowledge and informing policy. -
E-310 Trojan Horse-II at FACET-II and the STFC PWFA-FEL Programme Thursday, 19 September 2019 19:00 (20 Minutes)
4th European Advanced Accelerator Concepts Workshop Contribution ID: 337 Type: talk E-310 Trojan Horse-II at FACET-II and the STFC PWFA-FEL programme Thursday, 19 September 2019 19:00 (20 minutes) The beam-driven plasma photocathode wakefield acceleration concept [1] allows decoupled laser injection of electron bunches with emittance and brightness reach many orders of magnitude better than state-of-the-art [2]. After successful proof-of-concept demonstration at SLAC FACET in the “E-210: Trojan Horse” project [3], we now embark on the next experimental phase around the “E-310: Trojan-II” flagship and five related experiments at FACET-II, where better incoming beams and improved setup may unleash the full potential of the scheme. Plans for FACET-II experiments and complementary progress and plans on hybrid LWFA- >PWFA with automatically synchronized plasma photocathodes will be presented. Looking further ahead, the UK STFC has initiated the UK-US “PWFA-FEL” programme, which aims to push exploitation of the ultralow emittance and ultrahigh brightness of beams which may be obtainable from upcoming installations ofplasma photocathodes. This project will explore the benefits of ultrahigh brightness beams and will alsobeusedto assist experimental programmes on PWFA and plasma photocathodes at Daresbury’s CLARA facility and at FACET-II, and at future hybrid LWFA->PWFA systems. [1] PRL 108, 035001 (2012) [2] Nat. Comm. 8,15705 (2017) [3] Generation and acceleration of electron bunches from a plasma photocathode, Nat. Phys., accepted (2019) Primary authors: ROSENZWEIG, James (UCLA); HOGAN, Mark (SLAC National Accelerator Laboratory); KARGER, Oliver (University of Hamburg, Institute for Experimental Physics); HEINEMANN, T. -
The Future Climate of North West England
The University of Manchester Research The future climate of North West England Link to publication record in Manchester Research Explorer Citation for published version (APA): Cavan, G., Carter, J. G., & Kazmierczak, A. (2010). The future climate of North West England. EcoCities project, University of Manchester. Citing this paper Please note that where the full-text provided on Manchester Research Explorer is the Author Accepted Manuscript or Proof version this may differ from the final Published version. If citing, it is advised that you check and use the publisher's definitive version. General rights Copyright and moral rights for the publications made accessible in the Research Explorer are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Takedown policy If you believe that this document breaches copyright please refer to the University of Manchester’s Takedown Procedures [http://man.ac.uk/04Y6Bo] or contact [email protected] providing relevant details, so we can investigate your claim. Download date:08. Oct. 2021 The future climate of North West England Cavan, G. Carter, J. and Kazmierczak, A. 1 Introduction........................................................................................................ 3 1.1 Background to climate change................................................................... 3 1.2 Emissions scenarios ................................................................................. -
The Changing Epidemiology of Cryptosporidiosis in North West England
Epidemiol. Infect. (2005), 133, 785–793. f 2005 Cambridge University Press doi:10.1017/S0950268805004772 Printed in the United Kingdom The changing epidemiology of cryptosporidiosis in North West England W. SOPWITH 1*, K. OSBORN 2,R.CHALMERS3 AND M. REGAN 1 1 Health Protection Agency, North West Regional Office, Liverpool, UK 2 United Utilities, Warrington, UK 3 Cryptosporidium Reference Unit, National Public Health Service for Wales, Swansea, UK (Accepted 24 May 2005) SUMMARY Between 1996 and 2000, rates of cryptosporidiosis in North West England were significantly higher than overall in England and Wales, particularly during the first half of each year. In addition, during the second quarter of each year in this period, up to 40% of all cases recorded in England and Wales were from the North West Region. In 2001, cryptosporidiosis dramatically decreased throughout the United Kingdom and the springtime excess of cases formerly seen in the North West was no longer apparent. This changed epidemiology was due to a decline in cases of Cryptosporidium parvum (formerly genotype 2), associated with zoonotic transmission. Although the initial loss of a spring peak of infection corresponded with the outbreak of foot-and-mouth disease throughout the United Kingdom, its continued absence relates to major structural changes in the North West public water supply. This study highlights the far-reaching public health benefit of local working relationships in addressing re-occurring disease issues. INTRODUCTION In the past 10 years, there have been several springtime clusters of cryptosporidiosis in the United Transmission of the protozoan parasite Crypto- Kingdom relating to various sources of drinking sporidium to humans has been documented by direct water [4–7]. -
West Midlands European Regional Development Fund Operational Programme
Regional Competitiveness and Employment Objective 2007 – 2013 West Midlands European Regional Development Fund Operational Programme Version 3 July 2012 CONTENTS 1 EXECUTIVE SUMMARY 1 – 5 2a SOCIO-ECONOMIC ANALYSIS - ORIGINAL 2.1 Summary of Eligible Area - Strengths and Challenges 6 – 14 2.2 Employment 15 – 19 2.3 Competition 20 – 27 2.4 Enterprise 28 – 32 2.5 Innovation 33 – 37 2.6 Investment 38 – 42 2.7 Skills 43 – 47 2.8 Environment and Attractiveness 48 – 50 2.9 Rural 51 – 54 2.10 Urban 55 – 58 2.11 Lessons Learnt 59 – 64 2.12 SWOT Analysis 65 – 70 2b SOCIO-ECONOMIC ANALYSIS – UPDATED 2010 2.1 Summary of Eligible Area - Strengths and Challenges 71 – 83 2.2 Employment 83 – 87 2.3 Competition 88 – 95 2.4 Enterprise 96 – 100 2.5 Innovation 101 – 105 2.6 Investment 106 – 111 2.7 Skills 112 – 119 2.8 Environment and Attractiveness 120 – 122 2.9 Rural 123 – 126 2.10 Urban 127 – 130 2.11 Lessons Learnt 131 – 136 2.12 SWOT Analysis 137 - 142 3 STRATEGY 3.1 Challenges 143 - 145 3.2 Policy Context 145 - 149 3.3 Priorities for Action 150 - 164 3.4 Process for Chosen Strategy 165 3.5 Alignment with the Main Strategies of the West 165 - 166 Midlands 3.6 Development of the West Midlands Economic 166 Strategy 3.7 Strategic Environmental Assessment 166 - 167 3.8 Lisbon Earmarking 167 3.9 Lisbon Agenda and the Lisbon National Reform 167 Programme 3.10 Partnership Involvement 167 3.11 Additionality 167 - 168 4 PRIORITY AXES Priority 1 – Promoting Innovation and Research and Development 4.1 Rationale and Objective 169 - 170 4.2 Description of Activities -
Intel Parallel Computing Centre – First Report the Hartree Centre
Benefits of Leveraging Software Defined Visualization (OSPRay) Sergi Siso IPCC @ Hartree Centre, STFC Daresbury Laboratory United Kingdom Thursday, 23 March 2017 Software Defined Visualization 2 Index 1. Visualization Challenges in HPC 2. Ray tracing with OSPRay 3. Hands-On 1: Installing and using OSPRay 4. Remote Visualization with Paraview 5. Hand-One 2: Remote vis. of OpenCH and HVAC 6. Hartree Use Case 1: HVAC simulation 7. Hartree Use Case 2: IMAT Facility 8. Questions Thursday, 23 March 2017 Software Defined Visualization 3 Section 1 VISUALIZATION CHALLENGES IN HPC Why we need visualization in HPC “Yes," said Deep Thought, "I can do it.“ [Seven and a half million years later.... ] “The Answer to the Great Question... Of Life, the Universe and Everything... Is... Forty-two,' said Deep Thought, with infinite majesty and calm.” Douglas Adams, Hitchhiker’s Guide to the Galaxy Thursday, 23 March 2017 Software Defined Visualization 5 Why we need visualization in HPC Thursday, 23 March 2017 Software Defined Visualization 6 But not just rendering . In HPC visualization incudes: – Feature extraction – Isosurfaces / Isovolumes – Thresholding – Streamlines – Clip, Slice, gradient, … Some HPC visualization workloads are better suited to CPU . Visualization is a “big data” problem architectures. – Data movement problem (IO bottleneck) – Needs lots of memory – Need scalability to solve Thursday, 23 March 2017 Software Defined Visualization 7 Dataset Size Problem . Issues to simulate large datasets… May fit in System Memory but not in GPU memory PCI bus is slow Thursday, 23 March 2017 Software Defined Visualization 8 Rasterization Libraries OpenSWR vs MESA LLVMpipe Performance Comparison (drop in replacement for OpenGL) Thursday, 23 March 2017 Software Defined Visualization 9 Rasterization Libraries *Scientific Visualization in HPC presentation from Peter Messmer (NVIDIA) Thursday, 23 March 2017 Software Defined Visualization 10 In-Situ Visualization . -
Independent Review of the Scottish Funding Council's Research
Independent Review of the Scottish Funding Council’s Research Pooling Initiative Chaired by Professor Louise Heathwaite CBE FRSE Contents page Preface Executive summary 1. Introduction 2. The review process 3. Brief background to the Research Pooling Initiative 4. The evidence base 5. Evidence analysis 6. Conclusions and recommendations 7. List of advisory panel members 8. Appendices 2 Preface by Professor Louise Heathwaite CBE FRSE I was delighted to be asked by Mike Cantlay OBE (Chair of the Scottish Funding Council, SFC) and Professor Lesley Yellowlees CBE (Chair of SFC’s Research and Knowledge Exchange Committee, RKEC) to lead this independent review of the Research Pooling Initiative (RPI). Scotland’s major investment in, and long-term commitment to growing critical mass and driving collaboration across its core science disciplines was prescient and has been copied widely elsewhere. Since 2005, SFC has invested over £155m in eleven research pools, matched by over £330m from Scottish Universities and co-funding of almost £10m from the Office for Science & Technology and the Chief Scientist’s Office. Given the continued evolution of the research landscape in Scotland and the UK, now is a good time to evaluate whether the concept of research pooling remains fit for purpose. My remit was to undertake a high-level and summative analysis to establish the impact of SFC's investment in the pooling initiative on the Scottish research environment to date and to provide recommendations on the development of this and SFC’s future investment in research. I am hugely grateful to every member of my Advisory Panel for their valuable guidance and critical insight throughout the review process and particularly for their fortitude and good humour during the oral evidence sessions when the days were very long indeed.