Formation of Harmful Algal Blooms Cannot Be Explained by Allelopathic Interactions
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Growth and Grazing Rates of the Herbivorous Dinoflagellate Gymnodinium Sp
MARINE ECOLOGY PROGRESS SERIES Published December 16 Mar. Ecol. Prog. Ser. Growth and grazing rates of the herbivorous dinoflagellate Gymnodinium sp. from the open subarctic Pacific Ocean Suzanne L. Strom' School of Oceanography WB-10, University of Washington. Seattle. Washington 98195, USA ABSTRACT: Growth, grazing and cell volume of the small heterotroph~cdinoflagellate Gyrnnodin~um sp. Isolated from the open subarctic Pacific Ocean were measured as a funct~onof food concentration using 2 phytoplankton food species. Growth and lngestlon rates increased asymptotically with Increas- ing phytoplankon food levels, as did grazer cell volume; rates at representative oceanic food levels were high but below maxima. Clearance rates decreased with lncreaslng food levels when Isochrysis galbana was the food source; they increased ~vithlncreaslng food levels when Synechococcus sp. was the food source. There was apparently a grazlng threshold for Ingestion of Synechococcus: below an initial Synechococcus concentration of 20 pgC 1.' ingestion rates on this alga were very low, while above this initial concentratlon Synechococcus was grazed preferent~ally Gross growth efficiency varied between 0.03 and 0.53 (mean 0.21) and was highest at low food concentrations. Results support the hypothesis that heterotrophic d~noflagellatesmay contribute to controlling population increases of small, rap~dly-grow~ngphytoplankton specles even at low oceanic phytoplankton concentrations. INTRODUCTION as Gymnodinium and Gyrodinium is difficult or impos- sible using older preservation and microscopy tech- Heterotrophic dinoflagellates can be a significant niques; experimental emphasis has been on more component of the microzooplankton in marine waters. easily recognizable and collectable microzooplankton In the oceanic realm, Lessard (1984) and Shapiro et al. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Acidotropic Probes and Flow Cytometry: a Powerful Combination for Detecting Phagotrophy in Mixotrophic and Heterotrophic Protists
AQUATIC MICROBIAL ECOLOGY Vol. 44: 85–96, 2006 Published August 16 Aquat Microb Ecol Acidotropic probes and flow cytometry: a powerful combination for detecting phagotrophy in mixotrophic and heterotrophic protists Wanderson F. Carvalho*, Edna Granéli Marine Science Department, University of Kalmar, 391 82 Kalmar, Sweden ABSTRACT: Studies with phagotrophic organisms are hampered by a series of methodological con- straints. To overcome problems related to the detection and enumeration of mixotrophic and hetero- trophic cells containing food vacuoles, we combined flow cytometry and an acidotropic blue probe as an alternative method. Flow cytometry allows the analysis of thousands of cells per minute with high sensitivity to the autofluorescence of different groups of cells and to probe fluorescence. The method was first tested in a grazing experiment where the heterotrophic dinoflagellate Oxyrrhis marina fed on Rhodomonas salina. The maximum ingestion rate of O. marina was 1.7 prey ind.–1 h–1, and the fre- quency of cells with R. salina in the food vacuoles increased from 0 to 2.4 ± 0.5 × 103 cells ml–1 within 6 h. The blue probe stained 100% of O. marina cells that had R. salina in the food vacuoles. The acidotropic blue probe was also effective in staining food vacuoles in the mixotrophic dinoflagellate Dinophysis norvegica. We observed that 75% of the D. norvegica population in the aphotic zone pos- sessed food vacuoles. Overall, in cells without food vacuoles, blue fluorescence was as low as in cells that were kept probe free. Blue fluorescence in O. marina cells with food vacuoles was 6-fold higher than in those without food vacuoles (20 ± 4 and 3 ± 0 relative blue fluorescence cell–1, respectively), while in D. -
Oxyrrhis Marina-Based Models As a Tool to Interpret Protozoan Population Dynamics
JOURNAL OF PLANKTON RESEARCH j VOLUME 33 j NUMBER 4 j PAGES 651–663 j 2011 Oxyrrhis marina-based models as a tool to interpret protozoan population dynamics KEITH DAVIDSON 1*, FOTOON SAYEGH 2 AND DAVID J. S. MONTAGNES 3 1 2 SCOTTISH ASSOCIATION FOR MARINE SCIENCE, SCOTTISH MARINE INSTITUTE, OBAN, ARGYLL PA37 1QA, UK, PO BOX 100569, JEDDAH 21311, KINGDOM 3 OF SAUDI ARABIA AND SCHOOL OF BIOLOGICAL SCIENCES, UNIVERSITY OF LIVERPOOL, BIOSCIENCES BUILDING, CROWN STREET, LIVERPOOL L69 7ZB, UK Downloaded from https://academic.oup.com/plankt/article/33/4/651/1473431 by guest on 28 September 2021 *CORRESPONDING AUTHOR: [email protected] Received May 18, 2010; accepted in principle June 22, 2010; accepted for publication July 29, 2010 Corresponding editor: John Dolan Oxyrrhis marina-based experiments have frequently been used to underpin the construction and, or, parameterization of protozoan mathematical models. Initially, we examine the suitability and limitations of O. marina for this task. Subsequently, we summarize the range of aut- and synecological modelling studies based on O. marina, examining the questions asked and conclusions drawn from these, along with the range of processes and functions employed within the models. Finally, we discuss future modelling directions based on studies of O. marina. KEYWORDS: dinoflagellate; experimental design; Oxyrrhis marina; models INTRODUCTION Oxyrrhis marina, that can act as a model for others and With improved understanding of the pivotal role that the insights that have been obtained from mathematical protozoa play within microbial food webs (Azam et al., models based on its study. 1983; Pomeroy et al., 2007), an increasing body of exper- The heterotrophic flagellate O. -
Aquatic Microbial Ecology 80:193
This authors' personal copy may not be publicly or systematically copied or distributed, or posted on the Open Web, except with written permission of the copyright holder(s). It may be distributed to interested individuals on request. Vol. 80: 193–207, 2017 AQUATIC MICROBIAL ECOLOGY Published online October 5 https://doi.org/10.3354/ame01849 Aquat Microb Ecol Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey Beth A. Stauffer1,*, Alyssa G. Gellene2, Diane Rico3, Christine Sur4, David A. Caron2 1Department of Biology, University of Louisiana at Lafayette, Lafayette, LA 70403, USA 2Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA 3School of Oceanography, University of Washington, Seattle, WA 98105, USA 4Graduate Group in Ecology, University of California, Davis, Davis, CA 95616, USA ABSTRACT: Noctiluca scintillans is a bloom-forming heterotrophic dinoflagellate that can ingest (and grow on) a number of phytoplankton prey, including several potentially toxic phytoplankton species. The current study documented (1) a range of N. scintillans growth rates (μ = −0.09 to 0.83 d−1) on several species of harmful dinoflagellates and raphidophytes, including Heterosigma akashiwo and Akashiwo sanguinea, and (2) the first published growth rates on Lingulodinium polyedrum, Chattonella marina, and Alexandrium catenella. N. scintillans attained maximum growth rates (μ = 0.83 d−1) on the raphidophyte H. akashiwo and negative growth rates (i.e. signif- icant mortality) on the dinoflagellates A. catenella (μ = −0.03 d−1) and A. sanguinea (μ = −0.08 d−1) and the raphidophyte C. marina (μ = −0.09 d−1). Toxin production by A. -
The Mitochondrial Genome and Transcriptome of the Basal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE GBEprovided by PubMed Central The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates C. J. Jackson, S. G. Gornik, and R. F. Waller* School of Botany, University of Melbourne, Australia *Corresponding author: E-mail: [email protected]. Accepted: 12 November 2011 Abstract The sister phyla dinoflagellates and apicomplexans inherited a drastically reduced mitochondrial genome (mitochondrial DNA, mtDNA) containing only three protein-coding (cob, cox1, and cox3) genes and two ribosomal RNA (rRNA) genes. In apicomplexans, single copies of these genes are encoded on the smallest known mtDNA chromosome (6 kb). In dinoflagellates, however, the genome has undergone further substantial modifications, including massive genome amplification and recombination resulting in multiple copies of each gene and gene fragments linked in numerous combinations. Furthermore, protein-encoding genes have lost standard stop codons, trans-splicing of messenger RNAs (mRNAs) is required to generate complete cox3 transcripts, and extensive RNA editing recodes most genes. From taxa investigated to date, it is unclear when many of these unusual dinoflagellate mtDNA characters evolved. To address this question, we investigated the mitochondrial genome and transcriptome character states of the deep branching dinoflagellate Hematodinium sp. Genomic data show that like later-branching dinoflagellates Hematodinium sp. also contains an inflated, heavily recombined genome of multicopy genes and gene fragments. Although stop codons are also lacking for cox1 and cob, cox3 still encodes a conventional stop codon. Extensive editing of mRNAs also occurs in Hematodinium sp. -
Effect of Different Salinities on Growth and Intra-And Extracellular Toxicity
Vol. 67: 139–149, 2012 AQUATIC MICROBIAL ECOLOGY Published online October 2 doi: 10.3354/ame01589 Aquat Microb Ecol Effect of different salinities on growth and intra- and extracellular toxicity of four strains of the haptophyte Prymnesium parvum Astrid Weissbach, Catherine Legrand* Centre for Ecology and Evolution in Microbial model Systems (EEMiS), School of Natural Sciences, Linnæus University, 39182 Kalmar, Sweden ABSTRACT: The present study investigates the effect of brackish (7 PSU) and marine (26 PSU) salinity on physiological parameters and intra- and extracellular toxicity in 4 strains of Prymne- sium parvum Carter. The different P. parvum strains were grown in batch cultures in 2 trials under different experimental conditions to test the development of intra- and extracellular toxicity dur- ing growth. The response of P. parvum toxicity to salinity was validated using 2 protocols. Intra- specific variations in growth rate, maximal cell density (yield) and cell morphology were con- trolled by salinity. Extracellular toxicity was higher at 7 PSU in all strains, but no correlation was found between intra- and extracellular toxicity. The variation of extracellular toxicity in response to salinity was much greater than that of intracellular toxicity, which indicates that P. parvum may be producing a variety of substances contributing to its various types of ‘toxicity’. KEY WORDS: Allelopathy · Extracellular toxicity · Harmful algal species · Intracellular toxicity · Prymnesium parvum · Salinity · Strain Resale or republication not permitted without written consent of the publisher INTRODUCTION Igarashi et al. (1996). It is not yet clear if the toxins stored intracellularly, causing mortality of P. parvum Prymnesium parvum Carter, the so-called ‘golden grazers due to ingestion (mechanism 2) (Tillmann algae’, is a harmful and toxic microalga, which causes 2003, Barreiro et al. -
Short-Term Toxicity Effects of Prymnesium Parvum on Zooplankton Community Composition; Aquatic Sciences; Witt Et Al.; University of Oklahoma; [email protected]
Aquatic Sciences (2019) 81:55 https://doi.org/10.1007/s00027-019-0651-2 Aquatic Sciences RESEARCH ARTICLE Short‑term toxicity efects of Prymnesium parvum on zooplankton community composition Brenda A. Witt1,2 · Jessica E. Beyer1 · Thayer C. Hallidayschult1 · K. David Hambright1 Received: 13 November 2018 / Accepted: 29 June 2019 © Springer Nature Switzerland AG 2019 Abstract Harmful algal blooms (HABs) can disrupt aquatic communities through a variety of mechanisms, especially through toxin production. Herbivorous and omnivorous zooplankton may be particularly susceptible to HAB toxins, due to their close trophic relationship to algae as grazers. In this study, the acute toxigenic efects of the haptophyte Prymnesium parvum on a zooplankton community were investigated under laboratory conditions. Total zooplankton abundances decreased during 48-h exposure, although species responses to P. parvum densities varied. Changes in community composition were driven by declines in Daphnia mendotae and Keratella spp. abundances, which resulted in an average shift in copepod abundance from 47.1 to 72.4%, and rotifer abundance from 35.0 to 7.1%. Total cladocerans were relatively unchanged in relative abundance (11.1–10.4%), though the dominant cladoceran shifted from Daphnia mendotae (61.3% of cladocerans) to Bosmina longiro- stris (81.5% of cladocerans). Daphnia mendotae and Keratella spp. are known to be non-selective or generalist feeders and were likely harmed through a combination of ingestion of and contact by P. parvum. Proportional increases in copepod and Bosmina abundances in the presence of P. parvum likely refect selective or discriminate feeding abilities in these taxa. This study corroborates previous feld studies showing that P.