Node and Edge Eigenvector Centrality for Hypergraphs
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Practical Parallel Hypergraph Algorithms
Practical Parallel Hypergraph Algorithms Julian Shun [email protected] MIT CSAIL Abstract v While there has been signicant work on parallel graph pro- 0 cessing, there has been very surprisingly little work on high- e0 performance hypergraph processing. This paper presents v0 v1 v1 a collection of ecient parallel algorithms for hypergraph processing, including algorithms for betweenness central- e1 ity, maximal independent set, k-core decomposition, hyper- v2 trees, hyperpaths, connected components, PageRank, and v2 v3 e single-source shortest paths. For these problems, we either 2 provide new parallel algorithms or more ecient implemen- v3 tations than prior work. Furthermore, our algorithms are theoretically-ecient in terms of work and depth. To imple- (a) Hypergraph (b) Bipartite representation ment our algorithms, we extend the Ligra graph processing Figure 1. An example hypergraph representing the groups framework to support hypergraphs, and our implementa- , , , , , , and , , and its bipartite repre- { 0 1 2} { 1 2 3} { 0 3} tions benet from graph optimizations including switching sentation. between sparse and dense traversals based on the frontier size, edge-aware parallelization, using buckets to prioritize processing of vertices, and compression. Our experiments represented as hyperedges, can contain an arbitrary number on a 72-core machine and show that our algorithms obtain of vertices. Hyperedges correspond to group relationships excellent parallel speedups, and are signicantly faster than among vertices (e.g., a community in a social network). An algorithms in existing hypergraph processing frameworks. example of a hypergraph is shown in Figure 1a. CCS Concepts • Computing methodologies → Paral- Hypergraphs have been shown to enable richer analy- lel algorithms; Shared memory algorithms. -
Networkx: Network Analysis with Python
NetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users -
Measuring Homophily
Measuring Homophily Matteo Cristani, Diana Fogoroasi, and Claudio Tomazzoli University of Verona fmatteo.cristani, diana.fogoroasi.studenti, [email protected] Abstract. Social Network Analysis is employed widely as a means to compute the probability that a given message flows through a social net- work. This approach is mainly grounded upon the correct usage of three basic graph- theoretic measures: degree centrality, closeness centrality and betweeness centrality. We show that, in general, those indices are not adapt to foresee the flow of a given message, that depends upon indices based on the sharing of interests and the trust about depth in knowledge of a topic. We provide new definitions for measures that over- come the drawbacks of general indices discussed above, using Semantic Social Network Analysis, and show experimental results that show that with these measures we have a different understanding of a social network compared to standard measures. 1 Introduction Social Networks are considered, on the current panorama of web applications, as the principal virtual space for online communication. Therefore, it is of strong relevance for practical applications to understand how strong a member of the network is with respect to the others. Traditionally, sociological investigations have dealt with problems of defining properties of the users that can value their relevance (sometimes their impor- tance, that can be considered different, the first denoting the ability to emerge, and the second the relevance perceived by the others). Scholars have developed several measures and studied how to compute them in different types of graphs, used as models for social networks. This field of research has been named Social Network Analysis. -
Modeling Customer Preferences Using Multidimensional Network Analysis in Engineering Design
Modeling customer preferences using multidimensional network analysis in engineering design Mingxian Wang1, Wei Chen1, Yun Huang2, Noshir S. Contractor2 and Yan Fu3 1 Department of Mechanical Engineering, Northwestern University, Evanston, IL 60208, USA 2 Science of Networks in Communities, Northwestern University, Evanston, IL 60208, USA 3 Global Data Insight and Analytics, Ford Motor Company, Dearborn, MI 48121, USA Abstract Motivated by overcoming the existing utility-based choice modeling approaches, we present a novel conceptual framework of multidimensional network analysis (MNA) for modeling customer preferences in supporting design decisions. In the proposed multidimensional customer–product network (MCPN), customer–product interactions are viewed as a socio-technical system where separate entities of `customers' and `products' are simultaneously modeled as two layers of a network, and multiple types of relations, such as consideration and purchase, product associations, and customer social interactions, are considered. We first introduce a unidimensional network where aggregated customer preferences and product similarities are analyzed to inform designers about the implied product competitions and market segments. We then extend the network to a multidimensional structure where customer social interactions are introduced for evaluating social influence on heterogeneous product preferences. Beyond the traditional descriptive analysis used in network analysis, we employ the exponential random graph model (ERGM) as a unified statistical -
Multidimensional Network Analysis
Universita` degli Studi di Pisa Dipartimento di Informatica Dottorato di Ricerca in Informatica Ph.D. Thesis Multidimensional Network Analysis Michele Coscia Supervisor Supervisor Fosca Giannotti Dino Pedreschi May 9, 2012 Abstract This thesis is focused on the study of multidimensional networks. A multidimensional network is a network in which among the nodes there may be multiple different qualitative and quantitative relations. Traditionally, complex network analysis has focused on networks with only one kind of relation. Even with this constraint, monodimensional networks posed many analytic challenges, being representations of ubiquitous complex systems in nature. However, it is a matter of common experience that the constraint of considering only one single relation at a time limits the set of real world phenomena that can be represented with complex networks. When multiple different relations act at the same time, traditional complex network analysis cannot provide suitable an- alytic tools. To provide the suitable tools for this scenario is exactly the aim of this thesis: the creation and study of a Multidimensional Network Analysis, to extend the toolbox of complex network analysis and grasp the complexity of real world phenomena. The urgency and need for a multidimensional network analysis is here presented, along with an empirical proof of the ubiquity of this multifaceted reality in different complex networks, and some related works that in the last two years were proposed in this novel setting, yet to be systematically defined. Then, we tackle the foundations of the multidimensional setting at different levels, both by looking at the basic exten- sions of the known model and by developing novel algorithms and frameworks for well-understood and useful problems, such as community discovery (our main case study), temporal analysis, link prediction and more. -
Multilevel Hypergraph Partitioning with Vertex Weights Revisited
Multilevel Hypergraph Partitioning with Vertex Weights Revisited Tobias Heuer ! Karlsruhe Institute of Technology, Karlsruhe, Germany Nikolai Maas ! Karlsruhe Institute of Technology, Karlsruhe, Germany Sebastian Schlag ! Karlsruhe Institute of Technology, Karlsruhe, Germany Abstract The balanced hypergraph partitioning problem (HGP) is to partition the vertex set of a hypergraph into k disjoint blocks of bounded weight, while minimizing an objective function defined on the hyperedges. Whereas real-world applications often use vertex and edge weights to accurately model the underlying problem, the HGP research community commonly works with unweighted instances. In this paper, we argue that, in the presence of vertex weights, current balance constraint definitions either yield infeasible partitioning problems or allow unnecessarily large imbalances and propose a new definition that overcomes these problems. We show that state-of-the-art hypergraph partitioners often struggle considerably with weighted instances and tight balance constraints (even with our new balance definition). Thus, we present a recursive-bipartitioning technique that isable to reliably compute balanced (and hence feasible) solutions. The proposed method balances the partition by pre-assigning a small subset of the heaviest vertices to the two blocks of each bipartition (using an algorithm originally developed for the job scheduling problem) and optimizes the actual partitioning objective on the remaining vertices. We integrate our algorithm into the multilevel hypergraph -
On Decomposing a Hypergraph Into K Connected Sub-Hypergraphs
Egervary´ Research Group on Combinatorial Optimization Technical reportS TR-2001-02. Published by the Egrerv´aryResearch Group, P´azm´any P. s´et´any 1/C, H{1117, Budapest, Hungary. Web site: www.cs.elte.hu/egres . ISSN 1587{4451. On decomposing a hypergraph into k connected sub-hypergraphs Andr´asFrank, Tam´asKir´aly,and Matthias Kriesell February 2001 Revised July 2001 EGRES Technical Report No. 2001-02 1 On decomposing a hypergraph into k connected sub-hypergraphs Andr´asFrank?, Tam´asKir´aly??, and Matthias Kriesell??? Abstract By applying the matroid partition theorem of J. Edmonds [1] to a hyper- graphic generalization of graphic matroids, due to M. Lorea [3], we obtain a gen- eralization of Tutte's disjoint trees theorem for hypergraphs. As a corollary, we prove for positive integers k and q that every (kq)-edge-connected hypergraph of rank q can be decomposed into k connected sub-hypergraphs, a well-known result for q = 2. Another by-product is a connectivity-type sufficient condition for the existence of k edge-disjoint Steiner trees in a bipartite graph. Keywords: Hypergraph; Matroid; Steiner tree 1 Introduction An undirected graph G = (V; E) is called connected if there is an edge connecting X and V X for every nonempty, proper subset X of V . Connectivity of a graph is equivalent− to the existence of a spanning tree. As a connected graph on t nodes contains at least t 1 edges, one has the following alternative characterization of connectivity. − Proposition 1.1. A graph G = (V; E) is connected if and only if the number of edges connecting distinct classes of is at least t 1 for every partition := V1;V2;:::;Vt of V into non-empty subsets.P − P f g ?Department of Operations Research, E¨otv¨osUniversity, Kecskem´etiu. -
Hypergraph Packing and Sparse Bipartite Ramsey Numbers
Hypergraph packing and sparse bipartite Ramsey numbers David Conlon ∗ Abstract We prove that there exists a constant c such that, for any integer ∆, the Ramsey number of a bipartite graph on n vertices with maximum degree ∆ is less than 2c∆n. A probabilistic argument due to Graham, R¨odland Ruci´nskiimplies that this result is essentially sharp, up to the constant c in the exponent. Our proof hinges upon a quantitative form of a hypergraph packing result of R¨odl,Ruci´nskiand Taraz. 1 Introduction For a graph G, the Ramsey number r(G) is defined to be the smallest natural number n such that, in any two-colouring of the edges of Kn, there exists a monochromatic copy of G. That these numbers exist was proven by Ramsey [19] and rediscovered independently by Erd}osand Szekeres [10]. Whereas the original focus was on finding the Ramsey numbers of complete graphs, in which case it is known that t t p2 r(Kt) 4 ; ≤ ≤ the field has broadened considerably over the years. One of the most famous results in the area to date is the theorem, due to Chvat´al,R¨odl,Szemer´ediand Trotter [7], that if a graph G, on n vertices, has maximum degree ∆, then r(G) c(∆)n; ≤ where c(∆) is just some appropriate constant depending only on ∆. Their proof makes use of the regularity lemma and because of this the bound it gives on the constant c(∆) is (and is necessarily [11]) very bad. The situation was improved somewhat by Eaton [8], who proved, by using a variant of the regularity lemma, that the function c(∆) may be taken to be of the form 22c∆ . -
Hypernetwork Science: from Multidimensional Networks to Computational Topology∗
Hypernetwork Science: From Multidimensional Networks to Computational Topology∗ Cliff A. Joslyn,y Sinan Aksoy,z Tiffany J. Callahan,x Lawrence E. Hunter,x Brett Jefferson,z Brenda Praggastis,y Emilie A.H. Purvine,y Ignacio J. Tripodix March, 2020 Abstract cations, and physical infrastructure often afford a rep- resentation as such a set of entities with binary rela- As data structures and mathematical objects used tionships, and hence may be analyzed utilizing graph for complex systems modeling, hypergraphs sit nicely theoretical methods. poised between on the one hand the world of net- Graph models benefit from simplicity and a degree of work models, and on the other that of higher-order universality. But as abstract mathematical objects, mathematical abstractions from algebra, lattice the- graphs are limited to representing pairwise relation- ory, and topology. They are able to represent com- ships between entities, while real-world phenomena plex systems interactions more faithfully than graphs in these systems can be rich in multi-way relation- and networks, while also being some of the simplest ships involving interactions among more than two classes of systems representing topological structures entities, dependencies between more than two vari- as collections of multidimensional objects connected ables, or properties of collections of more than two in a particular pattern. In this paper we discuss objects. Representing group interactions is not possi- the role of (undirected) hypergraphs in the science ble in graphs natively, but rather requires either more of complex networks, and provide a mathematical complex mathematical objects, or coding schemes like overview of the core concepts needed for hypernet- “reification” or semantic labeling in bipartite graphs. -
A Framework for Transductive and Inductive Learning on Hypergraphs
Deep Hyperedges: a Framework for Transductive and Inductive Learning on Hypergraphs Josh Payne IBM T. J. Watson Research Center Yorktown Heights, NY 10598 [email protected] Abstract From social networks to protein complexes to disease genomes to visual data, hypergraphs are everywhere. However, the scope of research studying deep learning on hypergraphs is still quite sparse and nascent, as there has not yet existed an effective, unified framework for using hyperedge and vertex embeddings jointly in the hypergraph context, despite a large body of prior work that has shown the utility of deep learning over graphs and sets. Building upon these recent advances, we propose Deep Hyperedges (DHE), a modular framework that jointly uses contextual and permutation-invariant vertex membership properties of hyperedges in hypergraphs to perform classification and regression in transductive and inductive learning settings. In our experiments, we use a novel random walk procedure and show that our model achieves and, in most cases, surpasses state-of-the-art performance on benchmark datasets. Additionally, we study our framework’s performance on a variety of diverse, non-standard hypergraph datasets and propose several avenues of future work to further enhance DHE. 1 Introduction and Background As data becomes more plentiful, we find ourselves with access to increasingly complex networks that can be used to express many different types of information. Hypergraphs have been used to recommend music [1], model cellular and protein-protein interaction networks [2, 3], classify images and perform 3D object recognition [4, 5], diagnose Alzheimer’s disease [6], analyze social relationships [7, 8], and classify gene expression [9]—the list goes on. -
The Hitchhiker's Guide to Graph Exchange Formats
The Hitchhiker’s Guide to Graph Exchange Formats Prof. Matthew Roughan [email protected] http://www.maths.adelaide.edu.au/matthew.roughan/ Work with Jono Tuke UoA June 4, 2015 M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 1 / 31 Graphs Graph: G(N; E) I N = set of nodes (vertices) I E = set of edges (links) Often we have additional information, e.g., I link distance I node type I graph name M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 2 / 31 Why? To represent data where “connections” are 1st class objects in their own right I storing the data in the right format improves access, processing, ... I it’s natural, elegant, efficient, ... Many, many datasets M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 3 / 31 ISPs: Internode: layer 3 http: //www.internode.on.net/pdf/network/internode-domestic-ip-network.pdf M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 4 / 31 ISPs: Level 3 (NA) http://www.fiberco.org/images/Level3-Metro-Fiber-Map4.jpg M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 5 / 31 Telegraph submarine cables http://en.wikipedia.org/wiki/File:1901_Eastern_Telegraph_cables.png M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 6 / 31 Electricity grid M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 7 / 31 Bus network (Adelaide CBD) M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 8 / 31 French Rail http://www.alleuroperail.com/europe-map-railways.htm M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 9 / 31 Protocol relationships M.Roughan (UoA) Hitch Hikers Guide June 4, 2015 10 / 31 Food web M.Roughan (UoA) Hitch Hikers -
Cocircuits of Vector Matroids
RICE UNIVERSITY Cocircuits of Vector Matroids by John David Arellano A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE Master of Arts APPROVED, THESIS COMMITTEE: ?~ Ill::f;Cks, Chair Associate Professor of Computational and Applied Mathematics ~~~~ Richard A. Tapia Maxfield-Oshman Professor of Engineering University Professor of Computational and Applied Mathematics Wotao Yin Assistant Professor of Computational and Applied Mathematics Houston, Texas August, 2011 ABSTRACT Cocircuits of Vector Matroids by John David Arellano In this thesis, I present a set covering problem (SCP) formulation of the matroid cogirth problem, finding the cardinality of the smallest cocircuit of a matroid. Ad dressing the matroid cogirth problem can lead to significantly enhancing the design process of sensor networks. The solution to the matroid cogirth problem provides the degree of redundancy of the corresponding sensor network, and allows for the evalu ation of the quality of the network. I provide an introduction to matroids, and their relation to the degree of redundancy problem. I also discuss existing methods devel oped to solve the matroid cogirth problem and the SCP. Computational results are provided to validate a branch-and-cut algorithm that addresses the SCP formulation. Acknowledgments I would like to thank my parents and family for the love and support throughout my graduate career. I would like to thank my advisor, Dr. Illya Hicks, and the rest of my committee for their guidance and support. I would also like to thank Dr. Maria Cristina Villalobos for her guidance and support during my undergraduate career. A thanks also goes to Nabor Reyna, Dr.