Functional Heptagon-Centred Polyaromatics
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Chapter 1 Tropone and Tropolone
School of Molecular and Life Sciences New Routes to Troponoid Natural Products Jason Matthew Wells This thesis is presented for the Degree of Doctor of Philosophy of Curtin University November 2018 Declaration To the best of my knowledge and belief this thesis contains no material previously pub- lished by any other person except where due acknowledgement has been made. This thesis contains no material which has been accepted for the award of any other degree or diploma in any other university. Signature: Date: i Abstract Malaria is an infectious disease found in humans and other animals, it is caused by a single-cell parasite of the Plasmodium genus with many different substrains. Of these, P. falciparum is the most deadly to humans causing the majority of deaths. Although research into the area of antimalarial compounds is wide spread, few have been devel- oped with new structural features. Cordytropolone 37 is a natural product isolated in 2001 from the insect pathogenic fungus Cordyceps sp. BCC 1681 and has been shown to have antimalarial activity against P. falciparum. It has a structure unrelated to antimalarial com- pounds currently used in therapy. It does not contain a peroxide bridge as with artemisinin 25 or quinoline rings as with chloroquine 22. This unique structure indicates that it could possibly interact with the malaria parasite in a fashion unlike current treatments. In order for cordytropolone to be further developed as a potential treatment, it must first be synthe- sised in a laboratory environment. This study attempts to develop the first total synthesis of cordytropolone. H HO O N O O N O N H H H O O Cl HO O 22 25 37 Figure 0.0.1: Cordytropolone 37 has a unique structure compared to the current common malaria treatments The first method investigated towards the total synthesis of cordytropolone involved an intramolecular Buchner ring expansion. -
Hexafluorophosphate Salts with Tropine-Type Cations in The
RSC Advances PAPER View Article Online View Journal | View Issue Hexafluorophosphate salts with tropine-type cations in the extraction of alkaloids with the same Cite this: RSC Adv.,2018,8,262 nucleus from radix physochlainae† Bing Dong, Jie Tang, Alula Yonannes and Shun Yao * Ionic liquids (ILs) have been widely used in the field of extraction of natural bioactive compounds because of their advantages compared to traditional organic solvents. In this study, the new ‘like dissolves like’ mode was designed and seven types of tropine-based ionic liquids were used to extract tropane alkaloids from radix physochlainae, and then the relationship between their performance and structures together with À1 the effects of main extraction conditions were explored. It was found that 0.05 mol L [C3tr][PF6] aqueous solution had the ideal selectivity and high extraction efficiency of 95.1% at 75 C when the extraction time was 55 min and the solid–liquid ratio was 1 : 35, which was superior to that of 85% ethanol–water and 0.1% hydrochloric acid–water. There was no decomposition and racemization of Creative Commons Attribution-NonCommercial 3.0 Unported Licence. products occurring in the mixture solution when above extraction solvent was applied. In addition, the extraction behavior and mechanism using an ionic liquid aqueous solution was tentatively studied through thermodynamics experiments, near-infrared/infrared spectroscopy (NIR/IR), scanning electron Received 22nd November 2017 microscopy (SEM), and thermogravimetric analysis (TG), and subsequent back-extraction could be Accepted 14th December 2017 efficiently used to further separate alkaloids and ILs. In the developed ‘like dissolves like’ mode, the DOI: 10.1039/c7ra12687e extraction process of target alkaloids was found to be endothermic and spontaneous through the rsc.li/rsc-advances specific interaction between them and the solvent molecules with the same nucleus. -
Synthesis and Bioactivity of Analogues of the Marine Antibiotic Tropodithietic Acid
Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid Patrick Rabe1, Tim A. Klapschinski1, Nelson L. Brock1, Christian A. Citron1, Paul D’Alvise2, Lone Gram2 and Jeroen S. Dickschat*1 Letter Open Access Address: Beilstein J. Org. Chem. 2014, 10, 1796–1801. 1Kekulé-Institut für Organische Chemie, Rheinische doi:10.3762/bjoc.10.188 Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany and 2Department of Systems Biology, Received: 17 April 2014 Technical University of Denmark, Matematiktorvet bldg. 301, 2800 Accepted: 22 July 2014 Kongens Lyngby, Denmark Published: 06 August 2014 Email: This article is part of the Thematic Series "Natural products in synthesis Jeroen S. Dickschat* - [email protected] and biosynthesis". * Corresponding author Associate Editor: K. N. Ganesh Keywords: © 2014 Rabe et al; licensee Beilstein-Institut. antibiotics; natural products; Roseobacter; SAR study; tropodithietic License and terms: see end of document. acid; tropone Abstract Tropodithietic acid (TDA) is a structurally unique sulfur-containing antibiotic from the Roseobacter clade bacterium Phaeobacter inhibens DSM 17395 and a few other related species. We have synthesised several structural analogues of TDA and used them in bioactivity tests against Staphylococcus aureus and Vibrio anguillarum for a structure–activity relationship (SAR) study, revealing that the sulfur-free analogue of TDA, tropone-2-carboxylic acid, has an antibiotic activity that is even stronger than the bioactivity of the natural product. The synthesis of this compound and of several analogues is presented and the bioactivity of the synthetic compounds is discussed. Introduction Tropodithietic acid (TDA, 1a) is an antibiotic produced by the that are located on a plasmid [6,7], and the adjacent paaZ2 gene marine bacterium Phaeobacter inhibens. -
United States Patent (10) Patent No.: US 8,329,217 B2 Vergezz
US008329217B2 (12) United States Patent (10) Patent No.: US 8,329,217 B2 VergezZ. et all e 45) Date of Patent:e Dec.e 11, 2012 (54) DUAL CONTROLLED RELEASE DOSAGE 5, 190,765 A 3, 1993 Jao et al. FORM 5,208,037 A 5/1993 Wright et al. 5,252.338 A 10, 1993 Jao et al. 5,399,359 A 3, 1995 Baichwal (75) Inventors: Juan A. Vergez, Buenos Aires (AR): 5,543,155 A 8, 1996 Fekete et al. Marcelo A. Ricci, Buenos Aires (AR) 5,674,895 A 10/1997 Guittard et al. 5,788,987 A 8, 1998 Busetti et al. (73) Assignee: Osmotica Kereskedelmi es Szolgaltato 5,840,754. A 1 1/1998 Guittard et al. Kft, Budapest (HU) 5,866,164 A 2/1999 Kuczynski et al. s 5,912,268 A 6/1999 Guittard et al. 6,106,864 A 8, 2000 Dolan et al. (*) Notice: Subject to any disclaimer, the term of this 6,207,191 B1* 3/2001 Crison et al. .................. 424,472 patent is extended or adjusted under 35 2002/0010216 A1 1/2002 Rogosky et al. U.S.C. 154(b) by 1407 days. 2006/0177510 A1 8/2006 Vergez (21) Appl. No.: 11/355,315 FOREIGN PATENT DOCUMENTS y x- - - 9 JP 2646170 8, 1997 JP 2665858 10, 1997 (22) Filed: Feb. 15, 2006 WO 96.12477 5, 1996 WO 97.18814 5, 1997 (65) Prior Publication Data WO OOf 12069 3, 2000 WO OOf 18997 4/2000 US 2006/0204578 A1 Sep. 14, 2006 WO WOO1/51036 * 7/2OO1 Related U.S. -
Tropine Dehydrogenase: Purification, Some Properties and an Evaluation of Its Role in the Bacterial Metabolism of Tropine Barbara A
Biochem. J. (1995) 307, 603-608 (Printed in Great Britain) 603 Tropine dehydrogenase: purification, some properties and an evaluation of its role in the bacterial metabolism of tropine Barbara A. BARTHOLOMEW, Michael J. SMITH, Marianne T. LONG, Paul J. DARCY, Peter W. TRUDGILL and David J. HOPPER* Institute of Biological Sciences, University of Wales, Aberystwyth, Dyfed SY23 3DD, Wales, U.K. Tropine dehydrogenase was induced by growth of Pseudomonas number of related compounds. The apparent Kms were 6.06 ,uM AT3 on atropine, tropine or tropinone. It was NADP+-dependent for tropine and 73.4,M for nortropine with the specificity and gave no activity with NADI. The enzyme was very unstable constant (Vmax/Km) for tropine 7.8 times that for pseudotropine. but a rapid purification procedure using affinity chromatography The apparent Km for NADP+ was 48 ,uM. The deuterium of [3- that gave highly purified enzyme was developed. The enzyme 2H]tropine and [3-2H]pseudotropine was retained when these gave a single band on isoelectric focusing with an isoelectric compounds were converted into 6-hydroxycyclohepta- 1 ,4-dione, point at approximately pH 4. The native enzyme had an Mr of an intermediate in tropine catabolism, showing that the tropine 58000 by gel filtration and 28000 by SDS/PAGE and therefore dehydrogenase, although induced by growth on tropine, is not consists of two subunits of equal size. The enzyme displayed a involved in the catabolic pathway for this compound. 6-Hydroxy- narrow range of specificity and was active with tropine and cyclohepta-1,4-dione was also implicated as an intermediate in nortropine but not with pseudotropine, pseudonortropine, or a the pathways for pseudotropine and tropinone catabolism. -
Dissertation Enantioselective Β
DISSERTATION ENANTIOSELECTIVE β-FUNCTIONALIZATION OF ENALS VIA N-HETEROCYCLIC CARBENE CATALYSIS Submitted by Nicholas Andrew White Department of Chemistry In partial fulfillment of the requirements For the Degree of Doctor of Philosophy Colorado State University Fort Collins, Colorado Fall 2015 Doctoral Committee: Advisor: Tomislav Rovis Alan J. Kennan Eugene Y.-X. Chen Robert M. Williams Matt J. Kipper Copyright by Nicholas Andrew White 2015 All Rights Reserved ABSTRACT ENANTIOSELECTIVE β-FUNCTIONALIZATION OF ENALS VIA N-HETEROCYCLIC CARBENE CATALYSIS A series of δ-nitroesters were synthesized through the N-heterocyclic carbene catalyzed coupling of enals and nitroalkenes. The asymmetric coupling of these substrates via the homoenolate pathway afford δ-nitroesters in good yield, diastereoselectivity, and enantioselectivity. This methodology allows for the rapid synthesis of δ-lactams. Using this approach, we synthesized the pharmaceutically relevant piperidines paroxetine and femoxetine. A novel single-electron oxidation pathway for the N-heterocyclic carbene generated Breslow intermediate has been developed. Nitroarenes have been shown to transfer an oxygen from the nitro group to the β-position of an enal in an asymmetric fashion to generate β-hydroxy esters. This reaction affords desired β-hydroxy ester products in good yield and enantioselectivity and tolerates a wide range of enal substrates. A dimerization of aromatic enals to form 3,4-disubstituted cyclopentanones has been investigated. Using a single-electron oxidant, aromatic enals couple to form cyclopenanone products in good yield, good enantioselectivity, and excellent diastereoselectivity. A cross coupling has also been developed to afford non-symmetrical cyclopentanone products. ii ACKNOWLEDGEMENTS First, and foremost, I would like to thank my advisor, Professor Tomislav Rovis for his supervision and guidance over the past five years. -
Towards the Synthesis of Isocoronene
Department of Chemistry Towards the Synthesis of Isocoronene Iain William Currie This thesis is presented for the Degree of Doctor of Philosophy of Curtin University April 2018 Declaration To the best of my knowledge and belief this thesis contains no material previously published by any other person except where due acknowledgement has been made. This thesis contains no material which has been accepted for the award of any other degree or diploma in any other university. Signature: Date: i Abstract The concept of aromaticity and its implications are fundamentally important to a wide range of applied sciences involving organic molecules. Aromaticity arises from the delocalisation of electrons through a cyclic conjugated system known as a conjugated circuit. Monocyclic aromatic compounds possess a single conjugated circuit while polycyclic aromatic hydrocarbons (PAHs) may have numerous potential conjugated circuits. The aromaticity of PAHs is complicated by the presence of multiple conjugated circuits which may have varying contribution to the overall properties depending on several factors such as geometry and topology. Isocoronene 105 is one example of a PAH classified as a non-benzenoid corannulene. Isocoronene is unique among corannulenes since the conjugated circuits are restricted to the peripheral and central rings only. Isocoronene has been used as a model compound for computational studies into aromaticity and may provide the first example of a superaromatic molecule. The synthesis of novel aromatic structures such as isocoronene is essential in providing unambiguous empirical data which can be used to verify and develop computational methods. In addition, the development of new synthetic methodologies towards PAHs is important in the field of organic electronics. -
Resonance Energies of Some Compounds Containing Nitrogen Or Oxygen
Reprint from Theoret. chim. Ada (Beri.) 17, 235—238 (1970) Springer-Verlag Berlin ■ Heidelberg ■ New York © by Springer- Verlag ■ Printed in Germany Resonance Energies of Some Compounds Containing Nitrogen or Oxygen M ic h a e l J. S. D e w a r and N. T r in a jst io Theoret. chim. Acta(Berl.) 17,235— 238(1970) Resonance Energies of Some Compounds Containing Nitrogen or Oxygen* Michael J. S. Dewar and N. Trinajstić** University of Texas, Department of Chemistry, Austin, Texas 78712, USA Received February 9, 1970 Resonance energies are calculated for a number of aromatic, and potentially aromatic, compounds containing nitrogen or oxygen, using a recent version of our SCF MO n approximation. Recently we reported [1] a variant of our earlier SCF MO n approximation [2—5] in which the one-electron resonance integral (/?£)) is determined from the Mulliken relation instead of the Devvar-Schmeising thermocycle [6, 7]; i.e. fij = K S tj ( 1) where K is a constant characteristic of the atoms i and j. This procedure avoids a difficulty inherent in the earlier treatment, i.e. the need for data concerning “pure” double bonds. Such data are available only for bonds formed by carbon, nitrogen, and oxygen; the thermocycle approach could not therefore be extended to other elements. One important conclusion from the earlier papers was that bonds in classical polyenes [3, 4], and in classical conjugated compounds containing nitrogen or oxygen [8], are localized, in the sense that the calculated heats of atomization can be expressed as sums of “polyene” bond energies that carry over from one molecule to another. -
Decomposition of Ruthenium Olefin Metathesis Catalyst
catalysts Review Decomposition of Ruthenium OlefinOlefin Metathesis CatalystMetathesis Catalyst Magdalena Jawiczuk 1,, Anna Anna Marczyk Marczyk 1,21,2 andand Bartosz Bartosz Trzaskowski Trzaskowski 1,* 1,* 1 1 CentreCentre of of New New Technologies, Technologies, University University of of Warsaw, Warsaw, Banacha Banacha 2c, 2c, 02-097 02-097 Warsaw, Warsaw, Poland; [email protected]@cent.uw.edu.pl (M.J.); (M.J.); [email protected] [email protected] (A.M.) (A.M.) 2 Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland 2 Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland * Correspondence: [email protected] * Correspondence: [email protected] Received: 28 28 June 2020; Accepted: 02 2 AugustAugust 2020;2020; Published:Published: 5date August 2020 Abstract: RutheniumRuthenium olefin olefin metathesis metathesis catalysts catalysts are are one one of of the most commonly used class of catalysts. There There are are multiple multiple reviews reviews on on their their us useses in in various branches of chemistry and other sciences but a detailed review of their decomposition is missing, despite a large number of recent and important advances advances in in this this field. field. In In particular, particular, in in the the last last five five years years several several new new mechanism mechanism of decomposition,of decomposition, both both olefin-driven olefin-driven as well as well as induc as induceded by external by external agents, agents, have have been been suggested suggested and usedand usedto explain to explain differences differences in the decomposition in the decomposition rates and rates the metathesis and the metathesis activities activitiesof both standard, of both N-heterocyclicstandard, N-heterocyclic carbene-based carbene-based systems and systems the recently and the developed recently developed cyclic alkyl cyclic amino alkyl carbene- amino containingcarbene-containing complexes. -
Laszlo Gyermek: the Role of the Tropane Skeleton in Drug Research
1 Laszlo Gyermek: The role of the tropane skeleton in drug research This review describes certain reminiscences about an area of chemical pharmacology I have been involved with, on and off, for many years. Specifically, it focuses on tropane, a fascinating, naturally occurring bicyclic chemical ring system that lends itself to many pharmaceutical and therapeutic applications. My involvement with the tropane ring started more than 60 years ago in 1949, when, as a young assistant in the Institute of Pharmacology at the Medical Faculty of the University of Budapest, I started out to probe some, yet unexplored chemical pharmacological aspects of the best known tropane alkaloid, atropine, which is the tropic acid ester of tropine, the simplest, naturally occurring tropane compound, the structure of which is shown in Figure 1. The bicyclic ring system of tropane can be construed as a condensation product of a piperidine and pyrrolidine ring with a shared N atom as shown in Figure 2. Figure 3 calls attention to the numbering of the atoms of the tropane ring. Thus, the exact chemical name of tropane is: 8 Methyl azabicyclo (3.2.1) octane. This name also characterizes the manner of how this bicyclic ring system is branched, which has distinct pharmacological significance. 2 There exist about 230 naturally occurring tropane derivatives (Lounasmaa and Tamminen 1993). The number of synthetically produced tropane compounds is, however, much higher and runs to the thousands. As mentioned, tropine (or tropane-3-alpha-ol) with a molecular weight of 141.21 g/mol. and a molecular volume of 142 cubic Angstrom is the smallest tropane alkaloid, while the largest is grahamine, a trimer, with three fused tropane rings, with a molecular weight of 860 g/mol. -
Methodology Studies on One and Two Carbon Ring Expansion on Polyether Polycyclic Natural Products
Mamalis, Dimitrios (2020) Methodology studies on one and two carbon ring expansion on polyether polycyclic natural products. MRes thesis. http://theses.gla.ac.uk/81800/ Copyright and moral rights for this work are retained by the author A copy can be downloaded for personal non-commercial research or study, without prior permission or charge This work cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Enlighten: Theses https://theses.gla.ac.uk/ [email protected] Methodology Studies on One and Two Carbon Ring Expansion on Polyether Polycyclic Natural Products Dimitrios Mamalis, BSc Chemistry Thesis Submitted in the fulfillment of the requirements for the degree of Master in Research School of Chemistry College of Science and Engineering University of Glasgow September 2020 Abstract Medium sized cyclic ethers are found in many natural products, with the most notable example being the polyether polycyclic family of marine toxins. Due to their increased size loss of entropy, torsional strain and unfavourable transannular interactions, as well as other effects require different synthetic approaches than the smaller homologues. In this work, different pathways were explored for the efficient synthesis of the seven-, eight- and nine- membered rings of marine polyether polycyclic natural products, through the expansion of a common six-membered ether substrate. -
Synthesis and Bioactivity of Analogues of the Marine Antibiotic Tropodithietic Acid
Downloaded from orbit.dtu.dk on: Oct 05, 2021 Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid Rabe, Patrick; Klapschinski, Tim A.; Brock, Nelson L.; Citron, Christian A.; D'Alvise, Paul; Gram, Lone; Dickschat, Jeroen S. Published in: Beilstein Journal of Organic Chemistry Link to article, DOI: 10.3762/bjoc.10.188 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Rabe, P., Klapschinski, T. A., Brock, N. L., Citron, C. A., D'Alvise, P., Gram, L., & Dickschat, J. S. (2014). Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid. Beilstein Journal of Organic Chemistry, 10, 1796-1801. https://doi.org/10.3762/bjoc.10.188 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid Patrick Rabe1, Tim A.