High Performance Computing
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2.5 Classification of Parallel Computers
52 // Architectures 2.5 Classification of Parallel Computers 2.5 Classification of Parallel Computers 2.5.1 Granularity In parallel computing, granularity means the amount of computation in relation to communication or synchronisation Periods of computation are typically separated from periods of communication by synchronization events. • fine level (same operations with different data) ◦ vector processors ◦ instruction level parallelism ◦ fine-grain parallelism: – Relatively small amounts of computational work are done between communication events – Low computation to communication ratio – Facilitates load balancing 53 // Architectures 2.5 Classification of Parallel Computers – Implies high communication overhead and less opportunity for per- formance enhancement – If granularity is too fine it is possible that the overhead required for communications and synchronization between tasks takes longer than the computation. • operation level (different operations simultaneously) • problem level (independent subtasks) ◦ coarse-grain parallelism: – Relatively large amounts of computational work are done between communication/synchronization events – High computation to communication ratio – Implies more opportunity for performance increase – Harder to load balance efficiently 54 // Architectures 2.5 Classification of Parallel Computers 2.5.2 Hardware: Pipelining (was used in supercomputers, e.g. Cray-1) In N elements in pipeline and for 8 element L clock cycles =) for calculation it would take L + N cycles; without pipeline L ∗ N cycles Example of good code for pipelineing: §doi =1 ,k ¤ z ( i ) =x ( i ) +y ( i ) end do ¦ 55 // Architectures 2.5 Classification of Parallel Computers Vector processors, fast vector operations (operations on arrays). Previous example good also for vector processor (vector addition) , but, e.g. recursion – hard to optimise for vector processors Example: IntelMMX – simple vector processor. -
Chapter 5 Multiprocessors and Thread-Level Parallelism
Computer Architecture A Quantitative Approach, Fifth Edition Chapter 5 Multiprocessors and Thread-Level Parallelism Copyright © 2012, Elsevier Inc. All rights reserved. 1 Contents 1. Introduction 2. Centralized SMA – shared memory architecture 3. Performance of SMA 4. DMA – distributed memory architecture 5. Synchronization 6. Models of Consistency Copyright © 2012, Elsevier Inc. All rights reserved. 2 1. Introduction. Why multiprocessors? Need for more computing power Data intensive applications Utility computing requires powerful processors Several ways to increase processor performance Increased clock rate limited ability Architectural ILP, CPI – increasingly more difficult Multi-processor, multi-core systems more feasible based on current technologies Advantages of multiprocessors and multi-core Replication rather than unique design. Copyright © 2012, Elsevier Inc. All rights reserved. 3 Introduction Multiprocessor types Symmetric multiprocessors (SMP) Share single memory with uniform memory access/latency (UMA) Small number of cores Distributed shared memory (DSM) Memory distributed among processors. Non-uniform memory access/latency (NUMA) Processors connected via direct (switched) and non-direct (multi- hop) interconnection networks Copyright © 2012, Elsevier Inc. All rights reserved. 4 Important ideas Technology drives the solutions. Multi-cores have altered the game!! Thread-level parallelism (TLP) vs ILP. Computing and communication deeply intertwined. Write serialization exploits broadcast communication -
Mellanox Scalableshmem Support the Openshmem Parallel Programming Language Over Infiniband
SOFTWARE PRODUCT BRIEF Mellanox ScalableSHMEM Support the OpenSHMEM Parallel Programming Language over InfiniBand The SHMEM programming library is a one-side communications library that supports a unique set of parallel programming features including point-to-point and collective routines, synchronizations, atomic operations, and a shared memory paradigm used between the processes of a parallel programming application. SHMEM Details API defined by the OpenSHMEM.org consortium. There are two types of models for parallel The library works with the OpenFabrics RDMA programming. The first is the shared memory for Linux stack (OFED), and also has the ability model, in which all processes interact through a to utilize Mellanox Messaging libraries (MXM) globally addressable memory space. The other as well as Mellanox Fabric Collective Accelera- HIGHLIGHTS is a distributed memory model, in which each tions (FCA), providing an unprecedented level of FEATURES processor has its own memory, and interaction scalability for SHMEM programs running over – Use of symmetric variables and one- with another processors memory is done though InfiniBand. sided communication (put/get) message communication. The PGAS model, The use of Mellanox FCA provides for collective – RDMA for performance optimizations or Partitioned Global Address Space, uses a optimizations by taking advantage of the high for one-sided communications combination of these two methods, in which each performance features within the InfiniBand fabric, – Provides shared memory data transfer process has access to its own private memory, including topology aware coalescing, hardware operations (put/get), collective and also to shared variables that make up the operations, and atomic memory multicast and separate quality of service levels for global memory space. -
Computer Hardware Architecture Lecture 4
Computer Hardware Architecture Lecture 4 Manfred Liebmann Technische Universit¨atM¨unchen Chair of Optimal Control Center for Mathematical Sciences, M17 [email protected] November 10, 2015 Manfred Liebmann November 10, 2015 Reading List • Pacheco - An Introduction to Parallel Programming (Chapter 1 - 2) { Introduction to computer hardware architecture from the parallel programming angle • Hennessy-Patterson - Computer Architecture - A Quantitative Approach { Reference book for computer hardware architecture All books are available on the Moodle platform! Computer Hardware Architecture 1 Manfred Liebmann November 10, 2015 UMA Architecture Figure 1: A uniform memory access (UMA) multicore system Access times to main memory is the same for all cores in the system! Computer Hardware Architecture 2 Manfred Liebmann November 10, 2015 NUMA Architecture Figure 2: A nonuniform memory access (UMA) multicore system Access times to main memory differs form core to core depending on the proximity of the main memory. This architecture is often used in dual and quad socket servers, due to improved memory bandwidth. Computer Hardware Architecture 3 Manfred Liebmann November 10, 2015 Cache Coherence Figure 3: A shared memory system with two cores and two caches What happens if the same data element z1 is manipulated in two different caches? The hardware enforces cache coherence, i.e. consistency between the caches. Expensive! Computer Hardware Architecture 4 Manfred Liebmann November 10, 2015 False Sharing The cache coherence protocol works on the granularity of a cache line. If two threads manipulate different element within a single cache line, the cache coherency protocol is activated to ensure consistency, even if every thread is only manipulating its own data. -
Introduction to Parallel Programming
Introduction to Parallel Programming Martin Čuma Center for High Performance Computing University of Utah [email protected] Overview • Types of parallel computers. • Parallel programming options. • How to write parallel applications. • How to compile. • How to debug/profile. • Summary, future expansion. 3/13/2009 http://www.chpc.utah.edu Slide 2 Parallel architectures Single processor: • SISD – single instruction single data. Multiple processors: • SIMD - single instruction multiple data. • MIMD – multiple instruction multiple data. Shared Memory Distributed Memory 3/13/2009 http://www.chpc.utah.edu Slide 3 Shared memory Dual quad-core node • All processors have BUS access to local memory CPU Memory • Simpler programming CPU Memory • Concurrent memory access Many-core node (e.g. SGI) • More specialized CPU Memory hardware BUS • CHPC : CPU Memory Linux clusters, 2, 4, 8 CPU Memory core nodes CPU Memory 3/13/2009 http://www.chpc.utah.edu Slide 4 Distributed memory • Process has access only BUS CPU to its local memory Memory • Data between processes CPU Memory must be communicated • More complex Node Network Node programming Node Node • Cheap commodity hardware Node Node • CHPC: Linux clusters Node Node (Arches, Updraft) 8 node cluster (64 cores) 3/13/2009 http://www.chpc.utah.edu Slide 5 Parallel programming options Shared Memory • Threads – POSIX Pthreads, OpenMP – Thread – own execution sequence but shares memory space with the original process • Message passing – processes – Process – entity that executes a program – has its own -
An Open Standard for SHMEM Implementations Introduction
OpenSHMEM: An Open Standard for SHMEM Implementations Introduction • OpenSHMEM is an effort to create a standardized SHMEM library for C , C++, and Fortran • OpenSHMEM is a Partitioned Global Address Space (PGAS) library and supports Single Program Multiple Data (SPMD) style of programming • SGI’s SHMEM API is the baseline for OpenSHMEM Specification 1.0 • One-sided communication is achieved through Symmetric variables • globals C/C++: Non-stack variables Fortran: objects in common blocks or with the SAVE attribute • dynamically allocated and managed by the OpenSHMEM Library Figure 1. Dynamic allocation of symmetric variable ‘x’ OpenSHMEM API • OpenSHMEM Specification 1.0 provides support for data transfer operations, collective and point- to-point synchronization mechanisms (barrier, fence, quiet, wait), collective operations (broadcast, collection, reduction), atomic memory operations (swap, fetch/add, increment), and distributed locks. • Open to the community for reviews and contributions. Current Status • University of Houston has developed a portable reference OpenSHMEM library. • OpenSHMEM Specification 1.0 man pages are available. • OpenSHMEM mailing list for discussions and contributions can be joined by emailing [email protected] • Website for OpenSHMEM and a Wiki for community use are available. Figure 2. University of Houston http://www.openshmem.org/ Implementation Future Work and Goals • Develop OpenSHMEM Specification 2.0 with co-operation and contribution from the OpenSHMEM community • Discuss and extend specification with important new capabilities • Improve on the OpenSHMEM reference implementation by providing support for scalable collective algorithms • Explore innovative hardware platforms . -
Enabling Efficient Use of UPC and Openshmem PGAS Models on GPU Clusters
Enabling Efficient Use of UPC and OpenSHMEM PGAS Models on GPU Clusters Presented at GTC ’15 Presented by Dhabaleswar K. (DK) Panda The Ohio State University E-mail: [email protected] hCp://www.cse.ohio-state.edu/~panda Accelerator Era GTC ’15 • Accelerators are becominG common in hiGh-end system architectures Top 100 – Nov 2014 (28% use Accelerators) 57% use NVIDIA GPUs 57% 28% • IncreasinG number of workloads are beinG ported to take advantage of NVIDIA GPUs • As they scale to larGe GPU clusters with hiGh compute density – hiGher the synchronizaon and communicaon overheads – hiGher the penalty • CriPcal to minimize these overheads to achieve maximum performance 3 Parallel ProGramminG Models Overview GTC ’15 P1 P2 P3 P1 P2 P3 P1 P2 P3 LoGical shared memory Shared Memory Memory Memory Memory Memory Memory Memory Shared Memory Model Distributed Memory Model ParPPoned Global Address Space (PGAS) DSM MPI (Message PassinG Interface) Global Arrays, UPC, Chapel, X10, CAF, … • ProGramminG models provide abstract machine models • Models can be mapped on different types of systems - e.G. Distributed Shared Memory (DSM), MPI within a node, etc. • Each model has strenGths and drawbacks - suite different problems or applicaons 4 Outline GTC ’15 • Overview of PGAS models (UPC and OpenSHMEM) • Limitaons in PGAS models for GPU compuPnG • Proposed DesiGns and Alternaves • Performance Evaluaon • ExploiPnG GPUDirect RDMA 5 ParPPoned Global Address Space (PGAS) Models GTC ’15 • PGAS models, an aracPve alternave to tradiPonal message passinG - Simple -
Parallel Processing! 1! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 2! Suggested Readings! •! Readings! –! H&P: Chapter 7! •! (Over Next 2 Weeks)!
CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 1! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 2! Suggested Readings! •! Readings! –! H&P: Chapter 7! •! (Over next 2 weeks)! Lecture 23" Introduction to Parallel Processing! University of Notre Dame! University of Notre Dame! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 3! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 4! Processor components! Multicore processors and programming! Processor comparison! vs.! Goal: Explain and articulate why modern microprocessors now have more than one core andCSE how software 30321 must! adapt to accommodate the now prevalent multi- core approach to computing. " Introduction and Overview! Writing more ! efficient code! The right HW for the HLL code translation! right application! University of Notre Dame! University of Notre Dame! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! 6! Pipelining and “Parallelism”! ! Load! Mem! Reg! DM! Reg! ALU ! Instruction 1! Mem! Reg! DM! Reg! ALU ! Instruction 2! Mem! Reg! DM! Reg! ALU ! Instruction 3! Mem! Reg! DM! Reg! ALU ! Instruction 4! Mem! Reg! DM! Reg! ALU Time! Instructions execution overlaps (psuedo-parallel)" but instructions in program issued sequentially." University of Notre Dame! University of Notre Dame! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! CSE 30321 – Lecture 23 – Introduction to Parallel Processing! Multiprocessing (Parallel) Machines! Flynn#s -
Current Trends in High Performance Computing
Current Trends in High Performance Computing Chokchai Box Leangsuksun, PhD SWEPCO Endowed Professor*, Computer Science Director, High Performance Computing Initiative Louisiana Tech University [email protected] 1 *SWEPCO endowed professorship is made possible by LA Board of Regents Outline • What is HPC? • Current Trends • More on PS3 and GPU computing • Conclusion 12 December 2011 2 1 Mainstream CPUs • CPU speed – plateaus 3-4 Ghz • More cores in a single chip 3-4 Ghz cap – Dual/Quad core is now – Manycore (GPGPU) • Traditional Applications won’t get a free rides • Conversion to parallel computing (HPC, MT) This diagram is from “no free lunch article in DDJ 12 December 2011 3 New trends in computing • Old & current – SMP, Cluster • Multicore computers – Intel Core 2 Duo – AMD 2x 64 • Many-core accelerators – GPGPU, FPGA, Cell • More Many brains in one computer • Not to increase CPU frequency • Harness many computers – a cluster computing 12/12/11 4 2 What is HPC? • High Performance Computing – Parallel , Supercomputing – Achieve the fastest possible computing outcome – Subdivide a very large job into many pieces – Enabled by multiple high speed CPUs, networking, software & programming paradigms – fastest possible solution – Technologies that help solving non-trivial tasks including scientific, engineering, medical, business, entertainment and etc. • Time to insights, Time to discovery, Times to markets 12 December 2011 5 Parallel Programming Concepts Conventional serial execution Parallel execution of a problem where the problem is represented involves partitioning of the problem as a series of instructions that are into multiple executable parts that are executed by the CPU mutually exclusive and collectively exhaustive represented as a partially Problem ordered set exhibiting concurrency. -
System & Service Management
©2010, Thomas Galliker www.thomasgalliker.ch System & Service Management Prozessorarchitekturen Multiprocessing and Multithreading Computer architects have become stymied by the growing mismatch in CPU operating frequencies and DRAM access times. None of the techniques that exploited instruction-level parallelism within one program could make up for the long stalls that occurred when data had to be fetched from main memory. Additionally, the large transistor counts and high operating frequencies needed for the more advanced ILP techniques required power dissipation levels that could no longer be cheaply cooled. For these reasons, newer generations of computers have started to exploit higher levels of parallelism that exist outside of a single program or program thread. This trend is sometimes known as throughput computing. This idea originated in the mainframe market where online transaction processing emphasized not just the execution speed of one transaction, but the capacity to deal with massive numbers of transactions. With transaction-based applications such as network routing and web-site serving greatly increasing in the last decade, the computer industry has re-emphasized capacity and throughput issues. One technique of how this parallelism is achieved is through multiprocessing systems, computer systems with multiple CPUs. Once reserved for high-end mainframes and supercomputers, small scale (2-8) multiprocessors servers have become commonplace for the small business market. For large corporations, large scale (16-256) multiprocessors are common. Even personal computers with multiple CPUs have appeared since the 1990s. With further transistor size reductions made available with semiconductor technology advances, multicore CPUs have appeared where multiple CPUs are implemented on the same silicon chip. -
A Case for NUMA-Aware Contention Management on Multicore Systems
A Case for NUMA-aware Contention Management on Multicore Systems Sergey Blagodurov Sergey Zhuravlev Mohammad Dashti Simon Fraser University Simon Fraser University Simon Fraser University Alexandra Fedorova Simon Fraser University Abstract performance of individual applications or threads by as much as 80% and the overall workload performance by On multicore systems, contention for shared resources as much as 12% [23]. occurs when memory-intensive threads are co-scheduled Unfortunately studies of contention-aware algorithms on cores that share parts of the memory hierarchy, such focused primarily on UMA (Uniform Memory Access) as last-level caches and memory controllers. Previous systems, where there are multiple shared LLCs, but only work investigated how contention could be addressed a single memory node equipped with the single memory via scheduling. A contention-aware scheduler separates controller, and memory can be accessed with the same competing threads onto separate memory hierarchy do- latency from any core. However, new multicore sys- mains to eliminate resource sharing and, as a conse- tems increasingly use the Non-Uniform Memory Access quence, to mitigate contention. However, all previous (NUMA) architecture, due to its decentralized and scal- work on contention-aware scheduling assumed that the able nature. In modern NUMA systems, there are mul- underlying system is UMA (uniform memory access la- tiple memory nodes, one per memory domain (see Fig- tencies, single memory controller). Modern multicore ure 1). Local nodes can be accessed in less time than re- systems, however, are NUMA, which means that they mote ones, and each node has its own memory controller. feature non-uniform memory access latencies and multi- When we ran the best known contention-aware sched- ple memory controllers. -
Introduction to Parallel Computing
Introduction to Parallel Computing https://computing.llnl.gov/tutorials/parallel_comp/ | | | | | | Introduction to Parallel Computing Table of Contents 1. Abstract 2. Overview 1. What is Parallel Computing? 2. Why Use Parallel Computing? 3. Concepts and Terminology 1. von Neumann Computer Architecture 2. Flynn's Classical Taxonomy 3. Some General Parallel Terminology 4. Parallel Computer Memory Architectures 1. Shared Memory 2. Distributed Memory 3. Hybrid Distributed-Shared Memory 5. Parallel Programming Models 1. Overview 2. Shared Memory Model 3. Threads Model 4. Message Passing Model 5. Data Parallel Model 6. Other Models 6. Designing Parallel Programs 1. Automatic vs. Manual Parallelization 2. Understand the Problem and the Program 3. Partitioning 4. Communications 5. Synchronization 6. Data Dependencies 7. Load Balancing 8. Granularity 9. I/O 10. Limits and Costs of Parallel Programming 11. Performance Analysis and Tuning 7. Parallel Examples 1. Array Processing 2. PI Calculation 3. Simple Heat Equation 4. 1-D Wave Equation 8. References and More Information 1 of 44 04/18/2008 08:28 AM Introduction to Parallel Computing https://computing.llnl.gov/tutorials/parallel_comp/ Abstract This presentation covers the basics of parallel computing. Beginning with a brief overview and some concepts and terminology associated with parallel computing, the topics of parallel memory architectures and programming models are then explored. These topics are followed by a discussion on a number of issues related to designing parallel programs. The last portion of the presentation is spent examining how to parallelize several different types of serial programs. Level/Prerequisites: None Overview What is Parallel Computing? Traditionally, software has been written for serial computation: To be run on a single computer having a single Central Processing Unit (CPU); A problem is broken into a discrete series of instructions.