Thyroid-Specific Inactivation of KIF3A Alters the TSH Signaling Pathway
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The Connections of Wnt Pathway Components with Cell Cycle and Centrosome: Side Effects Or a Hidden Logic?
Critical Reviews in Biochemistry and Molecular Biology ISSN: 1040-9238 (Print) 1549-7798 (Online) Journal homepage: http://www.tandfonline.com/loi/ibmg20 The connections of Wnt pathway components with cell cycle and centrosome: side effects or a hidden logic? Vítězslav Bryja , Igor Červenka & Lukáš Čajánek To cite this article: Vítězslav Bryja , Igor Červenka & Lukáš Čajánek (2017): The connections of Wnt pathway components with cell cycle and centrosome: side effects or a hidden logic?, Critical Reviews in Biochemistry and Molecular Biology, DOI: 10.1080/10409238.2017.1350135 To link to this article: http://dx.doi.org/10.1080/10409238.2017.1350135 Published online: 25 Jul 2017. Submit your article to this journal Article views: 72 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ibmg20 Download by: [Masarykova Univerzita v Brne], [Lukas Cajanek] Date: 08 August 2017, At: 01:58 CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2017 https://doi.org/10.1080/10409238.2017.1350135 REVIEW ARTICLE The connections of Wnt pathway components with cell cycle and centrosome: side effects or a hidden logic? Vıtezslav Bryjaa , Igor Cervenka b and Lukas Caj anekc aDepartment of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic; bMolecular and Cellular Exercise Physiology, Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden; cDepartment of Histology and Embryology, Faculty of Medicine, Masaryk University, Brno, Czech Republic ABSTRACT ARTICLE HISTORY Wnt signaling cascade has developed together with multicellularity to orchestrate the develop- Received 10 April 2017 ment and homeostasis of complex structures. -
Educational Paper Ciliopathies
Eur J Pediatr (2012) 171:1285–1300 DOI 10.1007/s00431-011-1553-z REVIEW Educational paper Ciliopathies Carsten Bergmann Received: 11 June 2011 /Accepted: 3 August 2011 /Published online: 7 September 2011 # The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Cilia are antenna-like organelles found on the (NPHP) . Ivemark syndrome . Meckel syndrome (MKS) . surface of most cells. They transduce molecular signals Joubert syndrome (JBTS) . Bardet–Biedl syndrome (BBS) . and facilitate interactions between cells and their Alstrom syndrome . Short-rib polydactyly syndromes . environment. Ciliary dysfunction has been shown to Jeune syndrome (ATD) . Ellis-van Crefeld syndrome (EVC) . underlie a broad range of overlapping, clinically and Sensenbrenner syndrome . Primary ciliary dyskinesia genetically heterogeneous phenotypes, collectively (Kartagener syndrome) . von Hippel-Lindau (VHL) . termed ciliopathies. Literally, all organs can be affected. Tuberous sclerosis (TSC) . Oligogenic inheritance . Modifier. Frequent cilia-related manifestations are (poly)cystic Mutational load kidney disease, retinal degeneration, situs inversus, cardiac defects, polydactyly, other skeletal abnormalities, and defects of the central and peripheral nervous Introduction system, occurring either isolated or as part of syn- dromes. Characterization of ciliopathies and the decisive Defective cellular organelles such as mitochondria, perox- role of primary cilia in signal transduction and cell isomes, and lysosomes are well-known -
Adenylate Cyclase 3: a New Target for Anti‐Obesity Drug Development
obesity reviews doi: 10.1111/obr.12430 Obesity Pharmacotherapy Adenylate cyclase 3: a new target for anti-obesity drug development L. Wu,1 C. Shen,2 M. Seed Ahmed,3 C.-G. Östenson4 and H. F. Gu5,6 1Jiangsu Key Laboratory of Drug Screening, Summary China Pharmaceutical University, Nanjing Obesity has become epidemic worldwide, and abdominal obesity has a negative im- 210009, China, 2Department of Epidemiology, pact on health. Current treatment options on obesity, however, still remain limited. School of Public Health, Nanjing Medical It is then of importance to find a new target for anti-obesity drug development University, Nanjing 211166, China, 3Unit for based upon recent molecular studies in obesity. Adenylate cyclase 3 (ADCY3) is Medical Education, Centre for Learning and the third member of adenylyl cyclase family and catalyses the synthesis of cAMP Knowledge, Department of Learning, from ATP. Genetic studies with candidate gene and genome-wide association study Informatics, Management and Ethics, approaches have demonstrated that ADCY3 genetic polymorphisms are associated Karolinska Institutet, Stockholm 17177, with obesity in European and Chinese populations. Epigenetic studies have indi- Sweden, 4Rolf Luft Center for Diabetes cated that increased DNA methylation levels in the ADCY3 gene are involved in Research and Endocrinology, Department of the pathogenesis of obesity. Furthermore, biological analyses with animal models Molecular Medicine and Surgery, Karolinska have implicated that ADCY3 dysfunction resulted in increased body weight and Institutet, Karolinska University Hospital, Solna, fat mass, while reduction of body weight is partially explained by ADCY3 activa- Stockholm 17176, Sweden, 5Department of tion. In this review, we describe genomic and biological features of ADCY3, sum- Clinical Science, Intervention and marize genetic and epigenetic association studies of the ADCY3 gene with obesity Technologies, Karolinska Institutet, Karolinska and discuss dysfunction and activation of ADCY3. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Increased Plasma Levels of Adenylate Cyclase 8 and Camp Are Associated with Obesity and Type 2 Diabetes: Results from a Cross-Sectional Study
biology Article Increased Plasma Levels of Adenylate Cyclase 8 and cAMP Are Associated with Obesity and Type 2 Diabetes: Results from a Cross-Sectional Study 1, 2, , 2, 2 Samy M. Abdel-Halim y, Ashraf Al Madhoun * y , Rasheeba Nizam y, Motasem Melhem , Preethi Cherian 3, Irina Al-Khairi 3, Dania Haddad 2, Mohamed Abu-Farha 3 , Jehad Abubaker 3, Milad S. Bitar 4 and Fahd Al-Mulla 2,* 1 Department of Oncology, Karolinska University Hospital, 17177 Stockholm, Sweden; [email protected] 2 Department of Genetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait; [email protected] (R.N.); [email protected] (M.M.); [email protected] (D.H.) 3 Department of Biochemistry and Molecular Biology, Dasman Diabetes Institute, Dasman 15462, Kuwait; [email protected] (P.C.); [email protected] (I.A.-K.); [email protected] (M.A.-F.); [email protected] (J.A.) 4 Department of Pharmacology and Toxicology, Faculty of Medicine, Kuwait University, Jabriya 046302, Kuwait; [email protected] * Correspondence: [email protected] (A.A.M.); [email protected] (F.A.-M.); Tel.: +965-2224-2999 (ext. 2805) (A.A.M.); +965-6777-1040 (F.A.-M.) These authors equally contributed to this work. y Received: 5 July 2020; Accepted: 20 August 2020; Published: 24 August 2020 Abstract: Adenylate cyclases (ADCYs) catalyze the conversion of ATP to cAMP,an important co-factor in energy homeostasis. Giving ADCYs role in obesity, diabetes and inflammation, we questioned whether calcium-stimulated ADCY isoforms may be variably detectable in human plasma. -
RSPH6A Is Required for Sperm Flagellum Formation and Male
© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs221648. doi:10.1242/jcs.221648 RESEARCH ARTICLE RSPH6A is required for sperm flagellum formation and male fertility in mice Ferheen Abbasi1,2,‡, Haruhiko Miyata1,‡, Keisuke Shimada1, Akane Morohoshi1,2, Kaori Nozawa1,2,*, Takafumi Matsumura1,3, Zoulan Xu1,3, Putri Pratiwi1 and Masahito Ikawa1,2,3,4,§ ABSTRACT (Carvalho-Santos et al., 2011) and is used for sensing and The flagellum is an evolutionarily conserved appendage used for locomotion. Mammalian spermatozoan flagella are highly sensing and locomotion. Its backbone is the axoneme and a specialized to carry male genetic material into the female component of the axoneme is the radial spoke (RS), a protein reproductive tract and fertilize the oocyte. Internal cross-sections ‘ ’ complex implicated in flagellar motility regulation. Numerous diseases show that the flagellum comprises a 9+2 microtubule structure: a occur if the axoneme is improperly formed, such as primary ciliary bundle of nine microtubule doublets that surround a central pair of dyskinesia (PCD) and infertility. Radial spoke head 6 homolog A single microtubules (Satir and Christensen, 2007). Called the (RSPH6A) is an ortholog of Chlamydomonas RSP6 in the RS head axoneme, this structure consists of macromolecular complexes such and is evolutionarily conserved. While some RS head proteins have as the outer and inner dynein arms and radial spokes (RSs) been linked to PCD, little is known about RSPH6A. Here, we show that (Fig. 1A). mouse RSPH6A is testis-enriched and localized in the flagellum. First characterized in sea urchins (Afzelius, 1959), the RS is a Rsph6a knockout (KO) male mice are infertile as a result of their short T-shaped protein complex that extends from the doublet immotile spermatozoa. -
Hypomorphic CEP290/NPHP6 Mutations Result in Anosmia Caused by the Selective Loss of G Proteins in Cilia of Olfactory Sensory Neurons
Hypomorphic CEP290/NPHP6 mutations result in anosmia caused by the selective loss of G proteins in cilia of olfactory sensory neurons Dyke P. McEwen*, Robert K. Koenekoop†, Hemant Khanna‡, Paul M. Jenkins*, Irma Lopez†, Anand Swaroop‡§¶, and Jeffrey R. Martens*ʈ Departments of *Pharmacology, ‡Ophthalmology, and §Human Genetics, University of Michigan, Ann Arbor, MI 48105; and †McGill Ocular Genetics Laboratory, Montreal Children’s Hospital Research Institute, McGill University Health Centre, Montreal, QC, Canada H3H 1P3 Edited by Randall R. Reed, The Johns Hopkins University School of Medicine, Baltimore, MD, and accepted by the Editorial Board August 11, 2007 (received for review May 3, 2007) Cilia regulate diverse functions such as motility, fluid balance, and in olfactory cilia, little is known regarding the mechanisms of sensory perception. The cilia of olfactory sensory neurons (OSNs) their trafficking and subcellular localization. compartmentalize the signaling proteins necessary for odor detec- Cilia of OSNs lack the necessary machinery for protein tion; however, little is known regarding the mechanisms of protein synthesis. Therefore, nascent proteins must be transported from sorting/entry into olfactory cilia. Nephrocystins are a family of the cell body into the cilium. Movement along the ciliary ciliary proteins likely involved in cargo sorting during transport axoneme is tightly regulated and most likely involves evolution- from the basal body to the ciliary axoneme. In humans, loss-of- arily conserved intraflagellar transport (IFT) proteins, whereas function of the cilia–centrosomal protein CEP290/NPHP6 is associ- multiprotein complexes at the basal body act as a barrier to ated with Joubert and Meckel syndromes, whereas hypomorphic diffusion and restrict access to the cilium (1, 12). -
An EMT-Primary Cilium-GLIS2 Signaling Axis Regulates Mammogenesis and Claudin-Low Breast Tumorigenesis
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.29.424695; this version posted December 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 An EMT-primary cilium-GLIS2 signaling axis regulates mammogenesis 2 and claudin-low breast tumorigenesis 3 4 5 6 7 Molly M. Wilson1, Céline Callens2, Matthieu Le Gallo3,4, Svetlana Mironov2, Qiong Ding5, 8 Amandine Salamagnon2, Tony E. Chavarria1, Abena D. Peasah6, Arjun Bhutkar1, Sophie 9 Martin3,4, Florence Godey3,4, Patrick Tas3,4, Anton M. Jetten8, Jane E. Visvader7, Robert A. 10 Weinberg9, Massimo Attanasio5, Claude Prigent2, Jacqueline A. Lees1, Vincent J Guen2* 11 12 13 14 1Koch Institute for Integrative Cancer Research and Department of Biology, Massachusetts 15 Institute of Technology, Cambridge, MA, USA. 16 2Institut de Génétique et Développement de Rennes - Centre National de la Recherche 17 Scientifique, Rennes, France. 18 3INSERM U1242, Rennes 1 University, Rennes, France. 19 4Centre de Lutte Contre le Cancer Eugène Marquis, Rennes, France. 20 5Department of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, IA, 21 USA. 22 6Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 23 USA. 24 7Stem Cells and Cancer Division, The Walter and Eliza Hall Institute of Medical Research and 25 Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia. 26 8Cell Biology Section, Division of Intramural Research, National Institute of Environmental Health 27 Sciences, National Institutes of Health, Research Triangle Park, NC, USA. 28 9MIT Department of Biology and the Whitehead Institute, Cambridge, MA, USA. -
Loss-Of-Function Variants in ADCY3 Increase Risk of Obesity and Type 2 Diabetes
BRIEF COMMUNICATION https://doi.org/10.1038/s41588-017-0022-7 Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes Niels Grarup 1, Ida Moltke 2, Mette K. Andersen 1, Maria Dalby2, Kristoffer Vitting-Seerup2,3, Timo Kern1, Yuvaraj Mahendran1, Emil Jørsboe 2, Christina V. L. Larsen4,5, Inger K. Dahl-Petersen4, Arthur Gilly6, Daniel Suveges6, George Dedoussis7, Eleftheria Zeggini 6, Oluf Pedersen1, Robin Andersson 2, Peter Bjerregaard4,5, Marit E. Jørgensen4,5,8*, Anders Albrechtsen 2* and Torben Hansen 1,9* We have identified a variant in ADCY3 (encoding adenylate carriers had type 2 diabetes (P = 7.8 × 10−5; Table 1), while one had cyclase 3) associated with markedly increased risk of obesity impaired fasting glucose and one had impaired glucose tolerance. and type 2 diabetes in the Greenlandic population. The variant Notably, the association with type 2 diabetes remained significant disrupts a splice acceptor site, and carriers have decreased after adjustment for BMI (P = 6.5 × 10−4), suggesting that it is not ADCY3 RNA expression. Additionally, we observe an enrich- simply mediated by increased BMI. The effects on BMI and type 2 ment of rare ADCY3 loss-of-function variants among indi- diabetes were also observed, although with smaller sizes, when data viduals with type 2 diabetes in trans-ancestry cohorts. These were analyzed according to an additive genetic model (Table 1). findings provide new information on disease etiology relevant However, when we compared the recessive and additive models for future treatment strategies. with the full genotype model, we rejected the additive model (BMI, Identification of homozygous loss-of-function mutations in P = 0.002; type 2 diabetes, P = 0.004) but not the recessive model humans may readily provide information about the biological (BMI, P = 0.17; type 2 diabetes, P = 0.095). -
Supplementary Information – Postema Et Al., the Genetics of Situs Inversus Totalis Without Primary Ciliary Dyskinesia
1 Supplementary information – Postema et al., The genetics of situs inversus totalis without primary ciliary dyskinesia Table of Contents: Supplementary Methods 2 Supplementary Results 5 Supplementary References 6 Supplementary Tables and Figures Table S1. Subject characteristics 9 Table S2. Inbreeding coefficients per subject 10 Figure S1. Multidimensional scaling to capture overall genomic diversity 11 among the 30 study samples Table S3. Significantly enriched gene-sets under a recessive mutation model 12 Table S4. Broader list of candidate genes, and the sources that led to their 13 inclusion Table S5. Potential recessive and X-linked mutations in the unsolved cases 15 Table S6. Potential mutations in the unsolved cases, dominant model 22 2 1.0 Supplementary Methods 1.1 Participants Fifteen people with radiologically documented SIT, including nine without PCD and six with Kartagener syndrome, and 15 healthy controls matched for age, sex, education and handedness, were recruited from Ghent University Hospital and Middelheim Hospital Antwerp. Details about the recruitment and selection procedure have been described elsewhere (1). Briefly, among the 15 people with radiologically documented SIT, those who had symptoms reminiscent of PCD, or who were formally diagnosed with PCD according to their medical record, were categorized as having Kartagener syndrome. Those who had no reported symptoms or formal diagnosis of PCD were assigned to the non-PCD SIT group. Handedness was assessed using the Edinburgh Handedness Inventory (EHI) (2). Tables 1 and S1 give overviews of the participants and their characteristics. Note that one non-PCD SIT subject reported being forced to switch from left- to right-handedness in childhood, in which case five out of nine of the non-PCD SIT cases are naturally left-handed (Table 1, Table S1). -
The Two Motor Domains of KIF3A/B Coordinate for Processive Motility and Move at Different Speeds
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biophysical Journal Volume 87 September 2004 1795–1804 1795 The Two Motor Domains of KIF3A/B Coordinate for Processive Motility and Move at Different Speeds Yangrong Zhang and William O. Hancock Department of Bioengineering, The Pennsylvania State University, University Park, Pennsylvania ABSTRACT KIF3A/B, a kinesin involved in intraflagellar transport and Golgi trafficking, is distinctive because it contains two nonidentical motor domains. Our hypothesis is that the two heads have distinct functional properties, which are tuned to maximize the performance of the wild-type heterodimer. To test this, we investigated the motility of wild-type KIF3A/B heterodimer and chimaeric KIF3A/A and KIF3B/B homodimers made by splicing the head of one subunit to the rod and tail of the other. The first result is that KIF3A/B is processive, consistent with its transport function in cells. Secondly, the KIF3B/B homodimer moves at twice the speed of the wild-type motor but has reduced processivity, suggesting a trade-off between speed and processivity. Third, the KIF3A/A homodimer moves fivefold slower than wild-type, demonstrating distinct functional differences between the two heads. The heterodimer speed cannot be accounted for by a sequential head model in which the two heads alternate along the microtubule with identical speeds as in the homodimers. Instead, the data are consistent with a coordinated head model in which detachment of the slow KIF3A head from the microtubule is accelerated roughly threefold by the KIF3B head. -
A Transposon Screen Identifies Loss of Primary Cilia As a Mechanism of Resistance to SMO Inhibitors
Published OnlineFirst September 18, 2017; DOI: 10.1158/2159-8290.CD-17-0281 RESEARCH ARTICLE A Transposon Screen Identifies Loss of Primary Cilia as a Mechanism of Resistance to SMO Inhibitors Xuesong Zhao1,2, Ekaterina Pak1,2, Kimberly J. Ornell1,2, Maria F. Pazyra-Murphy1,2, Ethan L. MacKenzie1,2, Emily J. Chadwick1,2, Tatyana Ponomaryov1,2,3, Joseph F. Kelleher4, and Rosalind A. Segal1,2 Downloaded from cancerdiscovery.aacrjournals.org on September 30, 2021. © 2017 American Association for Cancer Research. 15-CD-17-0281_p1436-1449.indd 1436 11/17/17 2:34 PM Published OnlineFirst September 18, 2017; DOI: 10.1158/2159-8290.CD-17-0281 ABSTRACT Drug resistance poses a great challenge to targeted cancer therapies. In Hedgehog pathway–dependent cancers, the scope of mechanisms enabling resistance to SMO inhibitors is not known. Here, we performed a transposon mutagenesis screen in medulloblastoma and identifi ed multiple modes of resistance. Surprisingly, mutations in ciliogenesis genes represent a fre- quent cause of resistance, and patient datasets indicate that cilia loss constitutes a clinically relevant category of resistance. Conventionally, primary cilia are thought to enable oncogenic Hedgehog sig- naling. Paradoxically, we fi nd that cilia loss protects tumor cells from susceptibility to SMO inhibitors and maintains a “persister” state that depends on continuous low output of the Hedgehog program. Per- sister cells can serve as a reservoir for further tumor evolution, as additional alterations synergize with cilia loss to generate aggressive recurrent tumors. Together, our fi ndings reveal patterns of resistance and provide mechanistic insights for the role of cilia in tumor evolution and drug resistance.