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Whole-Genome Landscape of Pancreatic Neuroendocrine Tumours
Scarpa, A. et al. (2017) Whole-genome landscape of pancreatic neuroendocrine tumours. Nature, 543(7643), pp. 65-71. (doi:10.1038/nature21063) This is the author’s final accepted version. There may be differences between this version and the published version. You are advised to consult the publisher’s version if you wish to cite from it. http://eprints.gla.ac.uk/137698/ Deposited on: 12 December 2018 Enlighten – Research publications by members of the University of Glasgow http://eprints.gla.ac.uk Whole-genome landscape of pancreatic neuroendocrine tumours Aldo Scarpa1,2*§, David K. Chang3,4, 7,29,36* , Katia Nones5,6*, Vincenzo Corbo1,2*, Ann-Marie Patch5,6, Peter Bailey3,6, Rita T. Lawlor1,2, Amber L. Johns7, David K. Miller6, Andrea Mafficini1, Borislav Rusev1, Maria Scardoni2, Davide Antonello8, Stefano Barbi2, Katarzyna O. Sikora1, Sara Cingarlini9, Caterina Vicentini1, Skye McKay7, Michael C. J. Quinn5,6, Timothy J. C. Bruxner6, Angelika N. Christ6, Ivon Harliwong6, Senel Idrisoglu6, Suzanne McLean6, Craig Nourse3, 6, Ehsan Nourbakhsh6, Peter J. Wilson6, Matthew J. Anderson6, J. Lynn Fink6, Felicity Newell5,6, Nick Waddell6, Oliver Holmes5,6, Stephen H. Kazakoff5,6, Conrad Leonard5,6, Scott Wood5,6, Qinying Xu5,6, Shivashankar Hiriyur Nagaraj6, Eliana Amato1,2, Irene Dalai1,2, Samantha Bersani2, Ivana Cataldo1,2, Angelo P. Dei Tos10, Paola Capelli2, Maria Vittoria Davì11, Luca Landoni8, Anna Malpaga8, Marco Miotto8, Vicki L.J. Whitehall5,12,13, Barbara A. Leggett5,12,14, Janelle L. Harris5, Jonathan Harris15, Marc D. Jones3, Jeremy Humphris7, Lorraine A. Chantrill7, Venessa Chin7, Adnan M. Nagrial7, Marina Pajic7, Christopher J. Scarlett7,16, Andreia Pinho7, Ilse Rooman7†, Christopher Toon7, Jianmin Wu7,17, Mark Pinese7, Mark Cowley7, Andrew Barbour18, Amanda Mawson7†, Emily S. -
Updates on the Role of Molecular Alterations and NOTCH Signalling in the Development of Neuroendocrine Neoplasms
Journal of Clinical Medicine Review Updates on the Role of Molecular Alterations and NOTCH Signalling in the Development of Neuroendocrine Neoplasms 1,2, 1, 3, 4 Claudia von Arx y , Monica Capozzi y, Elena López-Jiménez y, Alessandro Ottaiano , Fabiana Tatangelo 5 , Annabella Di Mauro 5, Guglielmo Nasti 4, Maria Lina Tornesello 6,* and Salvatore Tafuto 1,* On behalf of ENETs (European NeuroEndocrine Tumor Society) Center of Excellence of Naples, Italy 1 Department of Abdominal Oncology, Istituto Nazionale Tumori, IRCCS Fondazione “G. Pascale”, 80131 Naples, Italy 2 Department of Surgery and Cancer, Imperial College London, London W12 0HS, UK 3 Cancer Cell Metabolism Group. Centre for Haematology, Immunology and Inflammation Department, Imperial College London, London W12 0HS, UK 4 SSD Innovative Therapies for Abdominal Metastases—Department of Abdominal Oncology, Istituto Nazionale Tumori, IRCCS—Fondazione “G. Pascale”, 80131 Naples, Italy 5 Department of Pathology, Istituto Nazionale Tumori, IRCCS—Fondazione “G. Pascale”, 80131 Naples, Italy 6 Unit of Molecular Biology and Viral Oncology, Department of Research, Istituto Nazionale Tumori IRCCS Fondazione Pascale, 80131 Naples, Italy * Correspondence: [email protected] (M.L.T.); [email protected] (S.T.) These authors contributed to this paper equally. y Received: 10 July 2019; Accepted: 20 August 2019; Published: 22 August 2019 Abstract: Neuroendocrine neoplasms (NENs) comprise a heterogeneous group of rare malignancies, mainly originating from hormone-secreting cells, which are widespread in human tissues. The identification of mutations in ATRX/DAXX genes in sporadic NENs, as well as the high burden of mutations scattered throughout the multiple endocrine neoplasia type 1 (MEN-1) gene in both sporadic and inherited syndromes, provided new insights into the molecular biology of tumour development. -
Pediatric and Perinatal Pathology (1842-1868)
VOLUME 33 | SUPPLEMENT 2 | MARCH 2020 MODERN PATHOLOGY ABSTRACTS PEDIATRIC AND PERINATAL PATHOLOGY (1842-1868) LOS ANGELES CONVENTION CENTER FEBRUARY 29-MARCH 5, 2020 LOS ANGELES, CALIFORNIA 2020 ABSTRACTS | PLATFORM & POSTER PRESENTATIONS EDUCATION COMMITTEE Jason L. Hornick, Chair William C. Faquin Rhonda K. Yantiss, Chair, Abstract Review Board Yuri Fedoriw and Assignment Committee Karen Fritchie Laura W. Lamps, Chair, CME Subcommittee Lakshmi Priya Kunju Anna Marie Mulligan Steven D. Billings, Interactive Microscopy Subcommittee Rish K. Pai Raja R. Seethala, Short Course Coordinator David Papke, Pathologist-in-Training Ilan Weinreb, Subcommittee for Unique Live Course Offerings Vinita Parkash David B. Kaminsky (Ex-Officio) Carlos Parra-Herran Anil V. Parwani Zubair Baloch Rajiv M. Patel Daniel Brat Deepa T. Patil Ashley M. Cimino-Mathews Lynette M. Sholl James R. Cook Nicholas A. Zoumberos, Pathologist-in-Training Sarah Dry ABSTRACT REVIEW BOARD Benjamin Adam Billie Fyfe-Kirschner Michael Lee Natasha Rekhtman Narasimhan Agaram Giovanna Giannico Cheng-Han Lee Jordan Reynolds Rouba Ali-Fehmi Anthony Gill Madelyn Lew Michael Rivera Ghassan Allo Paula Ginter Zaibo Li Andres Roma Isabel Alvarado-Cabrero Tamara Giorgadze Faqian Li Avi Rosenberg Catalina Amador Purva Gopal Ying Li Esther Rossi Roberto Barrios Anuradha Gopalan Haiyan Liu Peter Sadow Rohit Bhargava Abha Goyal Xiuli Liu Steven Salvatore Jennifer Boland Rondell Graham Yen-Chun Liu Souzan Sanati Alain Borczuk Alejandro Gru Lesley Lomo Anjali Saqi Elena Brachtel Nilesh Gupta Tamara -
PDF Datasheet
Product Datasheet BEND2 Overexpression Lysate NBL1-09637 Unit Size: 0.1 mg Store at -80C. Avoid freeze-thaw cycles. Protocols, Publications, Related Products, Reviews, Research Tools and Images at: www.novusbio.com/NBL1-09637 Updated 3/17/2020 v.20.1 Earn rewards for product reviews and publications. Submit a publication at www.novusbio.com/publications Submit a review at www.novusbio.com/reviews/destination/NBL1-09637 Page 1 of 2 v.20.1 Updated 3/17/2020 NBL1-09637 BEND2 Overexpression Lysate Product Information Unit Size 0.1 mg Concentration The exact concentration of the protein of interest cannot be determined for overexpression lysates. Please contact technical support for more information. Storage Store at -80C. Avoid freeze-thaw cycles. Buffer RIPA buffer Target Molecular Weight 87.7 kDa Product Description Description Transient overexpression lysate of BEN domain containing 2 (BEND2) The lysate was created in HEK293T cells, using Plasmid ID RC206228 and based on accession number NM_153346. The protein contains a C-MYC/DDK Tag. Gene ID 139105 Gene Symbol BEND2 Species Human Notes HEK293T cells in 10-cm dishes were transiently transfected with a non-lipid polymer transfection reagent specially designed and manufactured for large volume DNA transfection. Transfected cells were cultured for 48hrs before collection. The cells were lysed in modified RIPA buffer (25mM Tris-HCl pH7.6, 150mM NaCl, 1% NP-40, 1mM EDTA, 1xProteinase inhibitor cocktail mix, 1mM PMSF and 1mM Na3VO4, and then centrifuged to clarify the lysate. Protein concentration was measured by BCA protein assay kit.This product is manufactured by and sold under license from OriGene Technologies and its use is limited solely for research purposes. -
Effect of A549 Neuroendocrine Differentiation on Cytotoxic Immune Response
ID: 18-0145 7 5 I Mendieta et al. Lung cancer NED effect over 7:5 791–802 CTLs response RESEARCH Effect of A549 neuroendocrine differentiation on cytotoxic immune response Irasema Mendieta1, Rosa Elvira Nuñez-Anita2, Gilberto Pérez-Sánchez3, Lenin Pavón3, Alfredo Rodríguez-Cruz1, Guadalupe García-Alcocer1 and Laura Cristina Berumen1 1Facultad de Química, Universidad Autónoma de Querétaro, Querétaro, Mexico 2Facultad de Medicina Veterinaria y Zootecnia, Universidad Michoacana de San Nicolás Hidalgo, Morelia, Michoacán, Mexico 3Departmento de Psicoimunología, Instituto Nacional de Psiquiatría Ramón de la Fuente Muñiz, Ciudad de México, Mexico Correspondence should be addressed to L C Berumen: [email protected] Abstract The present study was designed to determine the effects of factors secreted by the Key Words lung adenocarcinoma cell line with the neuroendocrine phenotype, A549NED, on f lung cancer cytotoxic T lymphocytes (CTLs) activity in vitro. A perspective that integrates the f neuroendocrine tumours nervous, endocrine and immune system in cancer research is essential to understand f neuroendocrine the complexity of dynamic interactions in tumours. Extensive clinical research suggests differentiation that neuroendocrine differentiation (NED) is correlated with worse patient outcomes; f transdifferentiation however, little is known regarding the effects of neuroendocrine factors on the f antitumour response communication between the immune system and neoplastic cells. The human lung f immunomodulator cancer cell line A549 was induced to NED (A549NED) using cAMP-elevating agents. The A549NED cells showed changes in cell morphology, an inhibition of proliferation, an overexpression of chromogranin and a differential pattern of biogenic amine production (decreased dopamine and increased serotonin [5-HT] levels). Using co-cultures to determine the cytolytic CTLs activity on target cells, we showed that the acquisition of NED inhibits the decrease in the viability of the target cells and release of fluorescence. -
Misexpression of Cancer/Testis (Ct) Genes in Tumor Cells and the Potential Role of Dream Complex and the Retinoblastoma Protein Rb in Soma-To-Germline Transformation
Michigan Technological University Digital Commons @ Michigan Tech Dissertations, Master's Theses and Master's Reports 2019 MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO-GERMLINE TRANSFORMATION SABHA M. ALHEWAT Michigan Technological University, [email protected] Copyright 2019 SABHA M. ALHEWAT Recommended Citation ALHEWAT, SABHA M., "MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO- GERMLINE TRANSFORMATION", Open Access Master's Thesis, Michigan Technological University, 2019. https://doi.org/10.37099/mtu.dc.etdr/933 Follow this and additional works at: https://digitalcommons.mtu.edu/etdr Part of the Cancer Biology Commons, and the Cell Biology Commons MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO-GERMLINE TRANSFORMATION By Sabha Salem Alhewati A THESIS Submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE In Biological Sciences MICHIGAN TECHNOLOGICAL UNIVERSITY 2019 © 2019 Sabha Alhewati This thesis has been approved in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE in Biological Sciences. Department of Biological Sciences Thesis Advisor: Paul Goetsch. Committee Member: Ebenezer Tumban. Committee Member: Zhiying Shan. Department Chair: Chandrashekhar Joshi. Table of Contents List of figures .......................................................................................................................v -
The Role of Notch, Hh and Wnt in Lung Cancer Development
ARTÍCULO ESPECIAL The role of Notch, Hh and Wnt in lung cancer development El papel de Notch, Hh y Wnt en el desarrollo del cáncer de pulmón 1 2 Andrés Felipe Cardona , Noemí Reguart 1Clinical and Translational Oncology Group, Institute of Oncology, Fundación Santa Fe de Bogotá (Bogotá, Colombia). 2Foundation for Clinical and Applied Cancer Research (FICMAC) (Bogotá, Colombia). 3Medical Oncology Service, Hospital Clinic (Barcelona, Spain). Resumen Hedgehog (Hh), Notch y Wingless-Int-(Wnt) son vías de señalización altamente conservadas entre las especies, esenciales para el desarrollo embrionario y para definir el destino de las células progenitoras. Todas participan en el desarrollo del pul- món, así como en diversos procesos relacionados con la reparación del epitelio en la vía aérea. La activación aberrante de es- tas vías se observa en una gran variedad de neoplasias, lo que sugiere que contribuyen en la evolución y el mantenimiento de un fenotipo maligno. Nueva evidencia implica la transformación maligna del linaje neuroendocrino con la activación anormal de la vía Hedgehog, mientras que la señalización de Notch y Wnt puede ser importantes en otros tipos de células tumorales derivadas de las vías respiratorias. Teniendo en cuenta la importancia de las teorías sobre la formación de tumores partir de células pluripotenciales en lugar del modelo estocástico de la carcinogénesis, no sorprende el creciente interés en estos genes que están directamente implicados en el proceso de renovación de las células troncales. En la actualidad, se están diseñando múltiples compuestos centrados en la reorientación de estas vías en el cáncer de pulmón. Esta revisión se concentra en el papel del Hh, Wnt y Notch en la tumorigénesis del cáncer de pulmón. -
Anticancer Activity of SAHA, a Potent Histone Deacetylase Inhibitor, in NCI-H460 Human Large-Cell Lung Carcinoma Cells in Vitro and in Vivo
INTERNATIONAL JOURNAL OF ONCOLOGY 44: 451-458, 2014 Anticancer activity of SAHA, a potent histone deacetylase inhibitor, in NCI-H460 human large-cell lung carcinoma cells in vitro and in vivo YANXIA ZHAO*, DANDAN YU*, HONGGE WU, HONGLI LIU, HONGXIA ZHOU, RUNXIA GU, RUIGUANG ZHANG, SHENG ZHANG and GANG WU Cancer Center, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430022, P.R. China Received August 25, 2013; Accepted October 7, 2013 DOI: 10.3892/ijo.2013.2193 Abstract. Suberoylanilide hydroxamic acid (SAHA), a potent NSCLC (2). Among subtypes of LCC, the prognosis of large- pan-histone deacetylase (HDAC) inhibitor, has been clinically cell neuroendocrine carcinoma (LCNEC) was poorer than approved for the treatment of cutaneous T-cell lymphoma others even if at early stages (3-5) such as SCLC. A better (CTCL). SAHA has also been shown to exert a variety of therapeutic drug for this kind of lung cancer is thus urgently anticancer activities in many other types of tumors, however, required to drastically reduce the number of deaths. few studies have been reported in large-cell lung carcinoma Histone deacetylase (HDAC) inhibitors have garnered (LCC). Our study aimed to investigate the potential antitumor significant attention as anticancer drugs. These therapeutic effects of SAHA on LCC cells. Here, we report that SAHA agents have been clinically validated with the market approval was able to inhibit the proliferation of the LCC cell line of vorinostat (SAHA, Zolinza) for treatment of cutaneous NCI-H460 in a dose- and time-dependent manner, induced T-cell lymphoma (6,7). -
Electrophysiological Properties of Neuroendocrine Cells of the Intact Rat Pars Intermedia: Multiple Calcium Currents
The Journal of Neuroscience, March 1990, fO(3): 746-756 Electrophysiological Properties of Neuroendocrine Cells of the Intact Rat Pars Intermedia: Multiple Calcium Currents Peter J. Williams, Brian A. MacVicar, and Quentin J. Pittman Neuroscience Research Group, University of Calgary, Calgary, Alberta, Canada T2N 4Nl Intracellular recordings for current and voltage clamping were One analysis of Ca*+ currents in PI cells in tissue culture has obtained from 130 neuroendocrine cells of the pars inter- shown 2 currents with different thresholds and inactivation rates media (PI) in intact pituitaries maintained in vitro. Sponta- (Cota, 1986). Another report indicated that cultured PI cells neous and evoked action potentials were blocked by TTX may have 3 different Ca2+ currents (Taleb et al., 1986), appar- or by intracellular injection of a local anesthetic, 0X-222. ently corresponding to the T-, N-, and L-type currents described After potassium (K+) currents were blocked by tetraethylam- by Tsien and coworkers (Nowycky et al., 1985; Fox et al., 1987a, monium (TEA), 4-aminopyridine, and intracellular cesium b). It is important, however, to examine the electrophysiological (Cs’), 2 distinct calcium (Cal+) spikes were observed which properties of PI cells that have not been cultured to insure that were differentiated by characteristic thresholds, durations, they are not significantly affected by culture conditions. This is and amplitudes. Both Ca2+ spikes were blocked by cobalt particularly pertinent considering a recent study which reported (Co”) but were unaffected by TTX or QX-222. The low- changes in CaZ+ currents in PI cells over several days in culture threshold spike (LTS) had a smaller amplitude and inacti- (Cota and Armstrong, 1987). -
Pancreatic Cancer Metabolism
Published OnlineFirst March 3, 2017; DOI: 10.1158/2159-8290.CD-RW2017-044 RESEARCH WATCH Pancreatic Cancer Major finding: PanNET mutations affect Concept: Comprehensive molecular anal- Impact: The comprehensive identifica- DNA damage repair, chromatin remodeling, ysis of 102 clinically sporadic PanNETs tion of PanNET genetic alterations may telomere maintenance, and mTOR signaling. uncovers essential PanNET pathways. aid risk stratification and treatment. WHOLE-GENOME SEQUENCING DEFINES THE MUTATIONAL LANDSCAPE OF PanNETS Pancreatic neuroendocrine tumors (PanNET) are exhibited increased telomere length. There were classifi ed into three groups: low grade (G1), inter- an average of 29 structural rearrangements per mediate grade (G2), and high grade (G3). G3 Pan- tumor, with rearrangements leading to inactiva- NETs have a universally poor prognosis, whereas tion of tumor suppressors such as MTAP, ARID2, G1 and G2 tumors have an unpredictable clinical SMARCA4, MLL3, CDKN2A, and SETD2, or creating course. A better understanding of the molecular oncogenic gene fusions. In total, 66 somatic in- underpinnings of the disease may enable better frame gene fusions were identifi ed, including three risk stratifi cation and the identifi cation of patients EWSR1 fusion events leading to EWSR1–BEND2 or who might benefi t from early aggressive therapy. Scarpa and EWSR1–FLI1. Although EWSR1–FLI1 is a characteristic Ewing colleagues performed comprehensive molecular analyses of sarcoma fusion gene, the morphologic and pathologic features 102 clinically sporadic PanNETs. Whole-genome sequencing were consistent with PanNETs. RNA sequencing of 30 Pan- of 98 PanNETs defi ned fi ve distinct mutational signatures: NET tumors found that common genetic alterations affected MUTYH, APOBEC, BRCA-defi ciency, age, and COSMIC signa- DNA damage and repair, chromatin remodeling, telomere ture 5. -
Marine Mammal Protection Act and Endangered Species Act Lmplementation Program 1 999
National Marine Fisheries Service U.S DEPARTMENT OF COMMERCE AFSC PROCESSED REPORT 2OOO.1 1 Marine Mammal Protection Act and Endangered Species Act lmplementation Program 1 999 December 2000 This report does not constitute a publication and is for information only. All data herein are to be considered provisional. ERRATA NOTICE This document is being made available in .PDF format for the convenience of users; however, the accuracy and correctness of the document can only be certified as was presented in the original hard copy format. Inaccuracies in the OCR scanning process may influence text searches of the .PDF file. Light or faded ink in the original document may also affect the quality of the scanned document. Marine Mammal Protection Act and Endangered Species Act Implementation Program 1999 Edited by: Anita L. Lopez Douglas P. DeMaster Annual Reports ofresearch carried out on the population biologt of marine mammals by the National Marine Mammal Laboratory to meet the 1994 amendments to the Marine Mammal Protection Act and the Endangered Species Act Submitted to: Office of Protected Resources National Marine Fisheries Service 1335 East-West Highway Silver Spring, MD 20910 National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center National Marine Mammal Laboratory 7600 Sand Point Way Northeast Seattle, WA 98115-0070 December 2000 Preface Beginning in 1991, the National Marine Mammal Laboratory NMML) has been partially funded by the National Marine Fisheries Service's (NÀ/ßS) Office of Protected Resources to determine the abundance of selected species in U.S. waters of the eastern North Pacific Ocean. -
Heterogeneity in Signaling Pathways of Gastroenteropancreatic
Modern Pathology (2013) 26, 139–147 & 2013 USCAP, Inc. All rights reserved 0893-3952/13 $32.00 139 Heterogeneity in signaling pathways of gastroenteropancreatic neuroendocrine tumors: a critical look at notch signaling pathway He Wang1, Yili Chen1, Carlos Fernandez-Del Castillo2, Omer Yilmaz1 and Vikram Deshpande1 1Department of Pathology, Massachusetts General Hospital, Boston, MA, USA and 2Department of Surgery, Massachusetts General Hospital, Boston, MA, USA The molecular pathogenesis of gastroenteropancreatic neuroendocrine tumors is largely unknown. We hypothesize that gastroenteropancreatic neuroendocrine tumors are heterogeneous with regard to these signaling pathways and these differences could have a significant impact on the outcome of clinical trials. We selected 120 well-differentiated neuroendocrine tumors including tumors originating in pancreas (n ¼ 74), ileum (n ¼ 31), and rectum (n ¼ 15). Immunohistochemistry was performed on tissue microarrays using the following antibodies: NOTCH1, HES1, HEY1, pIGF1R, and FGF2. Gene profiling study was performed by using human genome U133A 2.0 array and data were analyzed. The gene profiling results were selectively confirmed by using quantitative reverse-transcription PCR. Initial immunohistochemical analysis showed NOTCH1 was uniformly expressed in rectal neuroendocrine tumors (100%), a subset of pancreatic neuroendocrine tumors (34%), and negative in ileal neuroendocrine tumors. Similarly, a downstream target of NOTCH1, HES1 was preferentially expressed in rectal neuroendocrine tumors (64%), a subset of pancreatic neuroendocrine tumors (10%), and uniformly negative in ileal neuroendocrine tumors. Messenger RNAs for NOTCH1, HES1, and HEY1 were 2.32-, 2.44-, and 2.39-folds, respectively, higher in rectal neuroendocrine tumors as compared with ileal neuroendo- crine tumors. Global gene expression profiling showed 95 genes were differentially expressed in small intestinal vs rectal neuroendocrine tumors, with changes as high as 50-fold.