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6 Phyllotaxis in Higher Plants Didier Reinhardt and Cris Kuhlemeier
6 Phyllotaxis in higher plants Didier Reinhardt and Cris Kuhlemeier 6.1 Introduction In plants, the arrangement of leaves and flowers around the stem is highly regular, resulting in opposite, alternate or spiral arrangements.The pattern of the lateral organs is called phyllotaxis, the Greek word for ‘leaf arrangement’. The most widespread phyllotactic arrangements are spiral and distichous (alternate) if one organ is formed per node, or decussate (opposite) if two organs are formed per node. In flowers, the organs are frequently arranged in whorls of 3-5 organs per node. Interestingly, phyllotaxis can change during the course of develop- ment of a plant. Usually, such changes involve the transition from decussate to spiral phyllotaxis, where they are often associated with the transition from the vegetative to reproductive phase. Since the first descriptions of phyllotaxis, the apparent regularity, especially of spiral phyllotaxis, has attracted the attention of scientists in various dis- ciplines. Philosophers and natural scientists were among the first to consider phyllotaxis and to propose models for its regulation. Goethe (1 830), for instance, postulated the existence of a general ‘spiral tendency in plant vegetation’. Mathematicians have described the regularity of phyllotaxis (Jean, 1994), and developed computer models that can recreate phyllotactic patterns (Meinhardt, 1994; Green, 1996). It was recognized early that phyllotactic patterns are laid down in the shoot apical meristem, the site of organ formation. Since scientists started to pos- tulate mechanisms for the regulation of phyllotaxis, two main concepts have dominated the field. The first principle holds that the geometry of the apex, and biophysical forces in the meristem determine phyllotaxis (van Iterson, 1907; Schiiepp, 1938; Snow and Snow, 1962; Green, 1992, 1996). -
Multidimensional Generalization of Phyllotaxis
CYBERNETICS AND PHYSICS, VOL. 8, NO. 3, 2019, 153–160 MULTIDIMENSIONAL GENERALIZATION OF PHYLLOTAXIS Andrei Lodkin Dept. of Mathematics & Mechanics St. Petersburg State University Russia [email protected] Article history: Received 28.10.2019, Accepted 28.11.2019 Abstract around a stem, seeds on a pine cone or a sunflower head, The regular spiral arrangement of various parts of bi- florets, petals, scales, and other units usually shows a ological objects (leaves, florets, etc.), known as phyl- regular character, see the pictures below. lotaxis, could not find an explanation during several cen- turies. Some quantitative parameters of the phyllotaxis (the divergence angle being the principal one) show that the organization in question is, in a sense, the same in a large family of living objects, and the values of the divergence angle that are close to the golden number prevail. This was a mystery, and explanations of this phenomenon long remained “lyrical”. Later, similar pat- terns were discovered in inorganic objects. After a se- ries of computer models, it was only in the XXI cen- tury that the rigorous explanation of the appearance of the golden number in a simple mathematical model has been given. The resulting pattern is related to stable fixed points of some operator and depends on a real parame- ter. The variation of this parameter leads to an inter- esting bifurcation diagram where the limiting object is the SL(2; Z)-orbit of the golden number on the segment [0,1]. We present a survey of the problem and introduce a multidimensional analog of phyllotaxis patterns. -
A Method of Constructing Phyllotaxically Arranged Modular Models by Partitioning the Interior of a Cylinder Or a Cone
A method of constructing phyllotaxically arranged modular models by partitioning the interior of a cylinder or a cone Cezary St¸epie´n Institute of Computer Science, Warsaw University of Technology, Poland [email protected] Abstract. The paper describes a method of partitioning a cylinder space into three-dimensional sub- spaces, congruent to each other, as well as partitioning a cone space into subspaces similar to each other. The way of partitioning is of such a nature that the intersection of any two subspaces is the empty set. Subspaces are arranged with regard to phyllotaxis. Phyllotaxis lets us distinguish privileged directions and observe parastichies trending these directions. The subspaces are created by sweeping a changing cross-section along a given path, which enables us to obtain not only simple shapes but also complicated ones. Having created these subspaces, we can put modules inside them, which do not need to be obligatorily congruent or similar. The method ensures that any module does not intersect another one. An example of plant model is given, consisting of modules phyllotaxically arranged inside a cylinder or a cone. Key words: computer graphics; modeling; modular model; phyllotaxis; cylinder partitioning; cone partitioning; genetic helix; parastichy. 1. Introduction Phyllotaxis is the manner of how leaves are arranged on a plant stem. The regularity of leaves arrangement, known for a long time, still absorbs the attention of researchers in the fields of botany, mathematics and computer graphics. Various methods have been used to describe phyllotaxis. A historical review of problems referring to phyllotaxis is given in [7]. Its connections with number sequences, e.g. -
Phyllotaxis: a Remarkable Example of Developmental Canalization in Plants Christophe Godin, Christophe Golé, Stéphane Douady
Phyllotaxis: a remarkable example of developmental canalization in plants Christophe Godin, Christophe Golé, Stéphane Douady To cite this version: Christophe Godin, Christophe Golé, Stéphane Douady. Phyllotaxis: a remarkable example of devel- opmental canalization in plants. 2019. hal-02370969 HAL Id: hal-02370969 https://hal.archives-ouvertes.fr/hal-02370969 Preprint submitted on 19 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Phyllotaxis: a remarkable example of developmental canalization in plants Christophe Godin, Christophe Gol´e,St´ephaneDouady September 2019 Abstract Why living forms develop in a relatively robust manner, despite various sources of internal or external variability, is a fundamental question in developmental biology. Part of the answer relies on the notion of developmental constraints: at any stage of ontogenenesis, morphogenetic processes are constrained to operate within the context of the current organism being built, which is thought to bias or to limit phenotype variability. One universal aspect of this context is the shape of the organism itself that progressively channels the development of the organism toward its final shape. Here, we illustrate this notion with plants, where conspicuous patterns are formed by the lateral organs produced by apical meristems. -
Phyllotaxis: a Model
Phyllotaxis: a Model F. W. Cummings* University of California Riverside (emeritus) Abstract A model is proposed to account for the positioning of leaf outgrowths from a plant stem. The specified interaction of two signaling pathways provides tripartite patterning. The known phyllotactic patterns are given by intersections of two ‘lines’ which are at the borders of two determined regions. The Fibonacci spirals, the decussate, distichous and whorl patterns are reproduced by the same simple model of three parameters. *present address: 136 Calumet Ave., San Anselmo, Ca. 94960; [email protected] 1 1. Introduction Phyllotaxis is the regular arrangement of leaves or flowers around a plant stem, or on a structure such as a pine cone or sunflower head. There have been many models of phyllotaxis advanced, too numerous to review here, but a recent review does an admirable job (Kuhlemeier, 2009). The lateral organs are positioned in distinct patterns around the cylindrical stem, and this alone is often referred to phyllotaxis. Also, often the patterns described by the intersections of two spirals describing the positions of florets such as (e.g.) on a sunflower head, are included as phyllotactic patterns. The focus at present will be on the patterns of lateral outgrowths on a stem. The patterns of intersecting spirals on more flattened geometries will be seen as transformations of the patterns on a stem. The most common patterns on a stem are the spiral, distichous, decussate and whorled. The spirals must include especially the common and well known Fibonacci patterns. Transition between patterns, for instance from decussate to spiral, is common as the plant grows. -
Spiral Phyllotaxis: the Natural Way to Construct a 3D Radial Trajectory in MRI
Magnetic Resonance in Medicine 66:1049–1056 (2011) Spiral Phyllotaxis: The Natural Way to Construct a 3D Radial Trajectory in MRI Davide Piccini,1* Arne Littmann,2 Sonia Nielles-Vallespin,2 and Michael O. Zenge2 While radial 3D acquisition has been discussed in cardiac MRI methods feature properties that are particularly well suited for its excellent results with radial undersampling, the self- for cardiac MRI applications. navigating properties of the trajectory need yet to be exploited. In the field of cardiac MRI, it has to be considered that Hence, the radial trajectory has to be interleaved such that the anatomy of the heart is very complex. Furthermore, the first readout of every interleave starts at the top of the sphere, which represents the shell covering all readouts. If this in many cases, the location and orientation of the heart is done sub-optimally, the image quality might be degraded by differ individually within the thorax. Up to now, only eddy current effects, and advanced density compensation is experienced operators are able to perform a comprehen- needed. In this work, an innovative 3D radial trajectory based on sive cardiac MR examination. As a consequence, the option a natural spiral phyllotaxis pattern is introduced, which features to acquire a 3D volume that covers the whole heart with optimized interleaving properties: (1) overall uniform readout high and isotropic resolution is a much desirable goal (11). distribution is preserved, which facilitates simple density com- In this configuration, some of the preparatory steps of a pensation, and (2) if the number of interleaves is a Fibonacci cardiac examination are obsolete since the complexity of number, the interleaves self-arrange such that eddy current effects are significantly reduced. -
Phyllotaxis: Is the Golden Angle Optimal for Light Capture?
Research Phyllotaxis: is the golden angle optimal for light capture? Soren€ Strauss1* , Janne Lempe1* , Przemyslaw Prusinkiewicz2, Miltos Tsiantis1 and Richard S. Smith1,3 1Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany; 2Department of Computer Science, University of Calgary, Calgary, AB T2N 1N4, Canada; 3Present address: Cell and Developmental Biology Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK Summary Author for correspondence: Phyllotactic patterns are some of the most conspicuous in nature. To create these patterns Richard S. Smith plants must control the divergence angle between the appearance of successive organs, Tel: +49 221 5062 130 sometimes to within a fraction of a degree. The most common angle is the Fibonacci or golden Email: [email protected] angle, and its prevalence has led to the hypothesis that it has been selected by evolution as Received: 7 May 2019 optimal for plants with respect to some fitness benefits, such as light capture. Accepted: 24 June 2019 We explore arguments for and against this idea with computer models. We have used both idealized and scanned leaves from Arabidopsis thaliana and Cardamine hirsuta to measure New Phytologist (2019) the overlapping leaf area of simulated plants after varying parameters such as leaf shape, inci- doi: 10.1111/nph.16040 dent light angles, and other leaf traits. We find that other angles generated by Fibonacci-like series found in nature are equally Key words: computer simulation, optimal for light capture, and therefore should be under similar evolutionary pressure. Our findings suggest that the iterative mechanism for organ positioning itself is a more heteroblasty, light capture, phyllotaxis, plant fitness. -
Dynamical System Approach to Phyllotaxis
Downloaded from orbit.dtu.dk on: Dec 17, 2017 Dynamical system approach to phyllotaxis D'ovidio, Francesco; Mosekilde, Erik Published in: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics Link to article, DOI: 10.1103/PhysRevE.61.354 Publication date: 2000 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): D'ovidio, F., & Mosekilde, E. (2000). Dynamical system approach to phyllotaxis. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 61(1), 354-365. DOI: 10.1103/PhysRevE.61.354 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. PHYSICAL REVIEW E VOLUME 61, NUMBER 1 JANUARY 2000 Dynamical system approach to phyllotaxis F. d’Ovidio1,2,* and E. Mosekilde1,† 1Center for Chaos and Turbulence Studies, Building 309, Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark 2International Computer Science Institute, 1947 Center Street, Berkeley, California 94704-1198 ͑Received 13 August 1999͒ This paper presents a bifurcation study of a model widely used to discuss phyllotactic patterns, i.e., leaf arrangements. -
QUEST 2014: Homework 6 Fibonacci Sequence and Golden Ratio Each
Name: School: QUEST 2014: Homework 6 Fibonacci Sequence and Golden Ratio Each problem is worth 4 points. 1. Consider the following sequence: 1; 3; 9; 27; 81; 243;::: . a) What type of sequence is this? b) What is the next term in the sequence? c) Calculate the differences of consecutive terms below the sequence above. d) What type of sequence is the sequence of differences you obtained in part c? 2. The ratio of the length (the longer side) to the width of a Golden Rectangle is what value? Give the name (in words), the Greek letter used to denote this value, the exact value (using a square root), and a three decimal approximation. 3. What special geometric property does a Golden Rectangle have? Draw a picture to illustrate your answer. 4. Starting with A1 = 2;A2 = 5 construct a new sequence using the Fibonacci Rule An+1 = An + An−1. Thus A3 = 5 + 2 = 7, etc.. a) Find A3;A4;:::;A9. b) Next calculate the ratios An+1 and find the value that it is ap- An proaching. 5. Explain how to draw a Golden Spiral. Illustrate. 6. Draw the rectangle with sides of integer lengths that is the best pos- sible approximation to a Golden Rectangle if a) Both sides have lengths less than 20. Calculate the ratio. Hint: Use the Fibonacci sequence. b) Both sides have lengths less than 60. Calculate the ratio. 7. Show how to construct a Golden Rectangle starting from a square, using a straight-edge and compass. 8. Calculate the 20-th Fibonacci number with a calculator using the nearest integer formula for Fn. -
Fibonacci Numbers and the Golden Ratio in Biology, Physics, Astrophysics, Chemistry and Technology: a Non-Exhaustive Review
Fibonacci Numbers and the Golden Ratio in Biology, Physics, Astrophysics, Chemistry and Technology: A Non-Exhaustive Review Vladimir Pletser Technology and Engineering Center for Space Utilization, Chinese Academy of Sciences, Beijing, China; [email protected] Abstract Fibonacci numbers and the golden ratio can be found in nearly all domains of Science, appearing when self-organization processes are at play and/or expressing minimum energy configurations. Several non-exhaustive examples are given in biology (natural and artificial phyllotaxis, genetic code and DNA), physics (hydrogen bonds, chaos, superconductivity), astrophysics (pulsating stars, black holes), chemistry (quasicrystals, protein AB models), and technology (tribology, resistors, quantum computing, quantum phase transitions, photonics). Keywords Fibonacci numbers; Golden ratio; Phyllotaxis; DNA; Hydrogen bonds; Chaos; Superconductivity; Pulsating stars; Black holes; Quasicrystals; Protein AB models; Tribology; Resistors; Quantum computing; Quantum phase transitions; Photonics 1. Introduction Fibonacci numbers with 1 and 1 and the golden ratio φlim → √ 1.618 … can be found in nearly all domains of Science appearing when self-organization processes are at play and/or expressing minimum energy configurations. Several, but by far non- exhaustive, examples are given in biology, physics, astrophysics, chemistry and technology. 2. Biology 2.1 Natural and artificial phyllotaxis Several authors (see e.g. Onderdonk, 1970; Mitchison, 1977, and references therein) described the phyllotaxis arrangement of leaves on plant stems in such a way that the overall vertical configuration of leaves is optimized to receive rain water, sunshine and air, according to a golden angle function of Fibonacci numbers. However, this view is not uniformly accepted (see Coxeter, 1961). N. Rivier and his collaborators (2016) modelized natural phyllotaxis by the tiling by Voronoi cells of spiral lattices formed by points placed regularly on a generative spiral. -
The Golden Relationships: an Exploration of Fibonacci Numbers and Phi
The Golden Relationships: An Exploration of Fibonacci Numbers and Phi Anthony Rayvon Watson Faculty Advisor: Paul Manos Duke University Biology Department April, 2017 This project was submitted in partial fulfillment of the requirements for the degree of Master of Arts in the Graduate Liberal Studies Program in the Graduate School of Duke University. Copyright by Anthony Rayvon Watson 2017 Abstract The Greek letter Ø (Phi), represents one of the most mysterious numbers (1.618…) known to humankind. Historical reverence for Ø led to the monikers “The Golden Number” or “The Devine Proportion”. This simple, yet enigmatic number, is inseparably linked to the recursive mathematical sequence that produces Fibonacci numbers. Fibonacci numbers have fascinated and perplexed scholars, scientists, and the general public since they were first identified by Leonardo Fibonacci in his seminal work Liber Abacci in 1202. These transcendent numbers which are inextricably bound to the Golden Number, seemingly touch every aspect of plant, animal, and human existence. The most puzzling aspect of these numbers resides in their universal nature and our inability to explain their pervasiveness. An understanding of these numbers is often clouded by those who seemingly find Fibonacci or Golden Number associations in everything that exists. Indeed, undeniable relationships do exist; however, some represent aspirant thinking from the observer’s perspective. My work explores a number of cases where these relationships appear to exist and offers scholarly sources that either support or refute the claims. By analyzing research relating to biology, art, architecture, and other contrasting subject areas, I paint a broad picture illustrating the extensive nature of these numbers. -
FIBONACCI PAVILION Akio Hizume [email protected] the Phyllotaxis Is Not Only an Old Subject but Also a New Subject of Science
FIBONACCI PAVILION Akio Hizume [email protected] The Phyllotaxis is not only an old subject but also a new subject of science. Most plants have used the golden ratio for several tens of millions of years. Since they can get maximum sunlight and stand stably, they are very successful today. It is the most ecological structure on the earth. We should learn from plants to build bright, well-ventilated, and H. Weyl “Symmetry” (1952) stable architecture. 6 3 9 This proposal is just a sample as a prototype. 1 8 However, this principle should become a general architectural form in the future. 4 5 It will be built anywhere in the world as a house, pavilion, temple, 2 7 museum, library, theater, or stadium using any materials (lumber, 10 2 log, bamboo, metal, etc.) on any scale that we want. rn an 2 (2 )n In this sample, the main structure consists only of two-by-twelve n n 1,2,3,4,5, pieces of lumber for simplicity. (where τ denotes the Golden Ratio) Scale Model 1/40 X Y 95 87 100 WC 74 82 66 79 61 53 92 Entrance 90 69 40 45 58 48 32 71 77 56 27 84 35 19 37 98 24 50 43 14 11 63 97 64 22 6 16 29 85 42 76 30 3 9 8 51 1 21 55 17 72 4 34 89 38 13 Office 93 2 5 68 59 25 12 26 47 7 46 10 80 18 33 20 81 15 39 60 67 23 31 28 54 41 94 52 73 88 36 44 75 49 X-X Section 62 65 57 86 70 78 96 83 99 Y Bookshelf 91 Office X WC The floor is tiled by the Voronoi tessellation based on the Phyllotaxis.