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Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
Check List 15 (5): 951–963
15 5 ANNOTATED LIST OF SPECIES Check List 15 (5): 951–963 https://doi.org/10.15560/15.5.951 Dinoflagellates in tropical estuarine waters from the Maraú River, Camamu Bay, northeastern Brazil Caio Ceza da Silva Nunes1, Sylvia Maria Moreira Susini-Ribeiro1, 2, Kaoli Pereira Cavalcante3 1 Mestrado em Sistemas Aquáticos Tropicais, Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 2 Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 3 Universidade Estadual Vale do Acaraú, Avenida da Universidade, 850, Campus da Betânia, Betânia, 62040370, Sobral, CE, Brazil. Corresponding author: Caio Ceza da Silva Nunes, [email protected] Abstract Dinoflagellates display great diversity in tropical regions and play an important role in the complex microbial food webs of marine and brackish environments. The goal of this study is to identify planktonic dinoflagellates and their distribution in the estuary of the Maraú River, Camamu Bay, state of Bahia, in a region with increasing use of shellfish farming. Samples were carried out monthly from August 2006 to July 2007 at four stations along the estuary. Plankton was sampled with a 20 μm mesh net. We identified 20 dinoflagellate species. The greatest species richness was ob- served in the genera Protoperidinium (five spp.), Tripos (four spp.), and Prorocentrum (three spp.). Based on literature, six species were classified as potentially harmful: Akashiwo sanguinea, Dinophysis caudata, Gonyaulax spinifera, Prorocentrum micans, Scrippsiella cf. acuminata, and Tripos furca. Protoperidinium venustum was recorded for the first time in coastal waters of Bahia. Keywords Brackish water, Dinophyta, distribution, potentially harmful species, taxonomy. -
Planktonic Algal Blooms from 2000 to 2015 in Acapulco
125: 61-93 October 2018 Research article Planktonic algal blooms from 2000 to 2015 in Acapulco Bay, Guerrero, Mexico Florecimientos de microalgas planctónicas de 2000 al 2015 en la Bahía de Acapulco, Guerrero, México María Esther Meave del Castillo1,2 , María Eugenia Zamudio-Resendiz1 ABSTRACT: 1 Universidad Autónoma Metro- Background and Aims: Harmful algal blooms (HABs) affect the marine ecosystem in multiple ways. The politana, Unidad Iztapalapa, De- objective was to document the species that produced blooms in Acapulco Bay over a 15-year period (2000- partamento de Hidrobiología, La- boratorio de Fitoplancton Marino 2015) and analyze the presence of these events with El Niño-Southern Oscillation (ENSO). y Salobre, Av. San Rafael Atlixco Methods: Thirty-five collections, made during the years 2000, 2002-2004, 2006-2011, 2013-2015, were 186, Col. Vicentina, Iztapalapa, undertaken with phytoplankton nets and Van Dorn bottle, yielding 526 samples, of which 423 were quanti- 09340 Cd. Mx., México. fied using the Utermöhl method. The relationship of HAB with ENSO was made with standardized values 2 Author for correspondence: of Multivariate ENSO Index (MEI) and the significance was evaluated with the method quadrant sums of [email protected] Olmstead-Tukey. Key results: Using data of cell density and high relative abundance (>60%), 53 blooms were recorded, most Received: November 21, 2017. of them occurring during the rainy season (June-October) and dry-cold season (November-March), plus 37 Reviewed: January 10, 2018. blooms reported by other authors. These 90 blooms were composed of 40 taxa: 21 diatoms and 19 dinoflagel- Accepted: April 6, 2018. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Toxin and Growth Responses of the Neurotoxic Dinoflagellate
toxins Article Toxin and Growth Responses of the Neurotoxic Dinoflagellate Vulcanodinium rugosum to Varying Temperature and Salinity Eric Abadie 1,*, Alexia Muguet 1, Tom Berteaux 1, Nicolas Chomérat 2, Philipp Hess 3, Emmanuelle Roque D’OrbCastel 1, Estelle Masseret 4 and Mohamed Laabir 4 1 Institut Français de Recherche pour l’Exploitation de la Mer (IFREMER), Laboratoire Environnement Ressources du Languedoc-Roussillon, Centre for Marine Biodiversity, Exploitation and Conservation (MARBEC), CS30171 Sète Cedex 03 34200, France; [email protected] (A.M.); [email protected] (T.B.); [email protected] (E.R.D.) 2 Institut Français de Recherche pour l’Exploitation de la Mer (IFREMER), Laboratoire Environnement Ressources de Bretagne Occidentale, Place de la Croix, Concarneau 29900, France; [email protected] 3 Institut Français de Recherche pour l’Exploitation de la Mer (IFREMER), Laboratoire Phycotoxines (DYNECO/PHYC), Rue de l’Ile d’Yeu, BP 21105 Nantes Cedex 3 44311, France; [email protected] 4 Center for Marine Biodiversity, Exploitation and Conservation (MARBEC), Université de Montpellier (UM), Institut de Recherche pour le Développement (IRD), Ifremer, Centre National de la Recherche Scientifique (CNRS), Place E. Bataillon, CC93, Montpellier Cedex 5 34095, France; [email protected] (E.M.); [email protected] (M.L.) * Corresponding: [email protected]; Tel.: + 33-(0)-4-99-57-32-86 Academic Editor: Luis M. Botana Received: 24 February 2016; Accepted: 18 April 2016; Published: 5 May 2016 Abstract: Vulcanodinium rugosum, a recently described species, produces pinnatoxins. The IFR-VRU-01 strain, isolated from a French Mediterranean lagoon in 2010 and identified as the causative dinoflagellate contaminating mussels in the Ingril Lagoon (French Mediterranean) with pinnatoxin-G, was grown in an enriched natural seawater medium. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Metagenomic Characterization of Unicellular Eukaryotes in the Urban Thessaloniki Bay
Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay George Tsipas SCHOOL OF ECONOMICS, BUSINESS ADMINISTRATION & LEGAL STUDIES A thesis submitted for the degree of Master of Science (MSc) in Bioeconomy Law, Regulation and Management May, 2019 Thessaloniki – Greece George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ Student Name: George Tsipas SID: 268186037282 Supervisor: Prof. Dr. Savvas Genitsaris I hereby declare that the work submitted is mine and that where I have made use of another’s work, I have attributed the source(s) according to the Regulations set in the Student’s Handbook. May, 2019 Thessaloniki - Greece Page 2 of 63 George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ 1. Abstract The present research investigates through metagenomics sequencing the unicellular protistan communities in Thermaikos Gulf. This research analyzes the diversity, composition and abundance in this marine environment. Water samples were collected monthly from April 2017 to February 2018 in the port of Thessaloniki (Harbor site, 40o 37’ 55 N, 22o 56’ 09 E). The extraction of DNA was completed as well as the sequencing was performed, before the downstream read processing and the taxonomic classification that was assigned using PR2 database. A total of 1248 Operational Taxonomic Units (OTUs) were detected but only 700 unicellular eukaryotes were analyzed, excluding unclassified OTUs, Metazoa and Streptophyta. In this research-based study the most abundant and diverse taxonomic groups were Dinoflagellata and Protalveolata. Specifically, the most abundant groups of all samples are Dinoflagellata with 190 OTUs (27.70%), Protalveolata with 139 OTUs (20.26%) Ochrophyta with 73 OTUs (10.64%), Cercozoa with 67 OTUs (9.77%) and Ciliophora with 64 OTUs (9.33%). -
Understanding Bioluminescence in Dinoflagellates—How Far Have We Come?
Microorganisms 2013, 1, 3-25; doi:10.3390/microorganisms1010003 OPEN ACCESS microorganisms ISSN 2076-2607 www.mdpi.com/journal/microorganisms Review Understanding Bioluminescence in Dinoflagellates—How Far Have We Come? Martha Valiadi 1,* and Debora Iglesias-Rodriguez 2 1 Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, August-Thienemann-Strasse, Plӧn 24306, Germany 2 Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected] or [email protected]; Tel.: +49-4522-763277; Fax: +49-4522-763310. Received: 3 May 2013; in revised form: 20 August 2013 / Accepted: 24 August 2013 / Published: 5 September 2013 Abstract: Some dinoflagellates possess the remarkable genetic, biochemical, and cellular machinery to produce bioluminescence. Bioluminescent species appear to be ubiquitous in surface waters globally and include numerous cosmopolitan and harmful taxa. Nevertheless, bioluminescence remains an enigmatic topic in biology, particularly with regard to the organisms’ lifestyle. In this paper, we review the literature on the cellular mechanisms, molecular evolution, diversity, and ecology of bioluminescence in dinoflagellates, highlighting significant discoveries of the last quarter of a century. We identify significant gaps in our knowledge and conflicting information and propose some important research questions -
Aquatic Microbial Ecology 80:193
This authors' personal copy may not be publicly or systematically copied or distributed, or posted on the Open Web, except with written permission of the copyright holder(s). It may be distributed to interested individuals on request. Vol. 80: 193–207, 2017 AQUATIC MICROBIAL ECOLOGY Published online October 5 https://doi.org/10.3354/ame01849 Aquat Microb Ecol Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey Beth A. Stauffer1,*, Alyssa G. Gellene2, Diane Rico3, Christine Sur4, David A. Caron2 1Department of Biology, University of Louisiana at Lafayette, Lafayette, LA 70403, USA 2Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA 3School of Oceanography, University of Washington, Seattle, WA 98105, USA 4Graduate Group in Ecology, University of California, Davis, Davis, CA 95616, USA ABSTRACT: Noctiluca scintillans is a bloom-forming heterotrophic dinoflagellate that can ingest (and grow on) a number of phytoplankton prey, including several potentially toxic phytoplankton species. The current study documented (1) a range of N. scintillans growth rates (μ = −0.09 to 0.83 d−1) on several species of harmful dinoflagellates and raphidophytes, including Heterosigma akashiwo and Akashiwo sanguinea, and (2) the first published growth rates on Lingulodinium polyedrum, Chattonella marina, and Alexandrium catenella. N. scintillans attained maximum growth rates (μ = 0.83 d−1) on the raphidophyte H. akashiwo and negative growth rates (i.e. signif- icant mortality) on the dinoflagellates A. catenella (μ = −0.03 d−1) and A. sanguinea (μ = −0.08 d−1) and the raphidophyte C. marina (μ = −0.09 d−1). Toxin production by A. -
A Comparative Study on the Affinities for Inorganic Carbon Uptake, Nitrate and Phosphate Between Marine Diatoms and Dinoflagellates
A comparative study on the affinities for inorganic carbon uptake, nitrate and phosphate between marine diatoms and dinoflagellates Mr. T. (Thomas) Hofman - 11066938 Institute for Biodiversity and Ecosystem Dynamics (IBED) Supervised by: mw. dr. J.H.M. Verspagen Abstract: Eutrophication and increasing atmospheric carbon dioxide concentrations are water quality concerns threatening our drinking water and food supply due to a rise in harmful cyanobacterial and harmful algal blooms. Understanding which factors determine the species distribution of phytoplankton could help to prevent the increase of these blooms in the future. Growth is thought to be limited by the scarcest resource available. As eutrophic waters are, by definition, rich in macronutrients such as nitrate and phosphate, inorganic carbon limitation becomes more significant in population dynamics as a limiting factor. Moreover, due to increased growth rates in eutrophied oceans, inorganic carbon depletes faster. An in silico literature research on the the affinity for phosphate, nitrate and inorganic carbon in marine diatom and dinoflagellate species gave insights in species distribution, based on in vivo uptake kinetics, field measurements and uptake mechanisms of both taxonomic groups. The affinity for nitrate and inorganic carbon was significantly higher dinoflagellates. This difference could explain the species composition in marine environments. According to findings in this research, dinoflagellates are better adapted, based on their affinity for nutrients and inorganic carbon, to oligotrophic and Ci depleted environments. 1. Introduction Phytoplankton blooms can severely decrease water quality, threatening drinking water and food supply. Anthropogenic increase of atmospheric carbon dioxide (CO2) concentrations and nutrient enrichment alter hydrological patterns and strongly influence the duration, frequency and intensity of harmful cyanobacterial blooms (HCB’s) (Visser et al, 2016) and harmful algal blooms (HAB’s) (Smith and Schindler, 2009). -
Novel and Rapidly Diverging Intergenic Sequences Between Tandem Repeats of the Luciferase Genes in Seven Dinoflagellate Species1
J. Phycol. 42, 96–103 (2005) r 2005 Phycological Society of America DOI: 10.1111/j.1529-8817.2005.00165.x NOVEL AND RAPIDLY DIVERGING INTERGENIC SEQUENCES BETWEEN TANDEM REPEATS OF THE LUCIFERASE GENES IN SEVEN DINOFLAGELLATE SPECIES1 Liyun Liu and J. Woodland Hastings2 Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, Massachusetts 02138, USA Tandemly arranged luciferase genes were previ- Our previous studies of the structure of dinoflagel- ously reported in two dinoflagellates species, but lates genes and their circadian regulation revealed that their intergenic regions were strikingly different several occur in tandemly arranged copies (Le et al. and no canonical promoter sequences were found. 1997, Li and Hastings 1998, Okamoto et al. 2001). Here, we examined the intergenic regions of the Other than for ribosomal genes (Sollner-Webb and luciferase genes of five other dinoflagellate species Tower 1986) and a few protein-coding genes in two along with those of the earlier two. In all cases, the protozoa, Trypanosoma brucei and Babesia bovis (Lee and genes exist in multiple copies and are arranged Van der Ploeg 1997, Suarez et al. 1998), such an ar- tandemly, coding for proteins of similar sizes and rangement is not known in other eukaryotes. Indeed, sequences. However, the 50 untranslated region, 30 it is well known that the dinoflagellate nucleus is very untranslated region, and intergenic regions of the unusual; its envelope remains intact throughout the seven genes differ greatly in length and sequence, cell cycle, with the separation of the chromosomes in except for two stretches that are conserved in the mitosis being carried out by an external mitotic spindle intergenic regions of two pairs of phylogenetically (Taylor 1987).