Open Peer Review: the Current Landscape and Emerging Models
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CNRS ROADMAP for OPEN SCIENCE 18 November 2019
CNRS ROADMAP FOR OPEN SCIENCE 18 November 2019 TABLE OF CONTENTS Introduction 4 1. Publications 6 2. Research data 8 3. Text and data mining and analysis 10 4. Individual evaluation of researchers and Open Science 11 5. Recasting Scientific and Technical Information for Open Science 12 6. Training and skills 13 7. International positioning 14 INTRODUCTION The international movement towards Open Science started more than 30 years ago and has undergone unprecedented development since the web made it possible on a global scale with reasonable costs. The dissemination of scientific production on the Internet, its identification and archiving lift the barriers to permanent access without challenging the protection of personal data or intellectual property. Now is the time to make it “as open as possible, as closed as necessary”. Open Science is not only about promoting a transversal approach to the sharing of scientific results. By opening up data, processes, codes, methods or protocols, it also offers a new way of doing science. Several scientific, civic and socio-economic reasons make Just over a year ago, France embarked on this vast transfor- the development of Open Science essential today: mation movement. Presented on 4 July 2018 by the Minister • Sharing scientific knowledge makes research more ef- of Higher Education,Research and Innovation, the “Natio- fective, more visible, and less redundant. Open access to nal Plan for Open Science”1 aims, in the words of Frédérique data and results is a sea change for the way research is Vidal, to ensure that “the results of scientific research are done, and opens the way to the use of new tools. -
Is Sci-Hub Increasing Visibility of Indian Research Papers? an Analytical Evaluation Vivek Kumar Singh1,*, Satya Swarup Srichandan1, Sujit Bhattacharya2
Journal of Scientometric Res. 2021; 10(1):130-134 http://www.jscires.org Perspective Paper Is Sci-Hub Increasing Visibility of Indian Research Papers? An Analytical Evaluation Vivek Kumar Singh1,*, Satya Swarup Srichandan1, Sujit Bhattacharya2 1Department of Computer Science, Banaras Hindu University, Varanasi, Uttar Pradesh, INDIA. 2CSIR-National Institute of Science Technology and Development Studies, New Delhi, INDIA. ABSTRACT Sci-Hub, founded by Alexandra Elbakyan in 2011 in Kazakhstan has, over the years, Correspondence emerged as a very popular source for researchers to download scientific papers. It is Vivek Kumar Singh believed that Sci-Hub contains more than 76 million academic articles. However, recently Department of Computer Science, three foreign academic publishers (Elsevier, Wiley and American Chemical Society) have Banaras Hindu University, filed a lawsuit against Sci-Hub and LibGen before the Delhi High Court and prayed for Varanasi-221005, INDIA. complete blocking these websites in India. It is in this context, that this paper attempts to Email id: [email protected] find out how many Indian research papers are available in Sci-Hub and who downloads them. The citation advantage of Indian research papers available on Sci-Hub is analysed, Received: 16-03-2021 with results confirming that such an advantage do exist. Revised: 29-03-2021 Accepted: 25-04-2021 Keywords: Indian Research, Indian Science, Black Open Access, Open Access, Sci-Hub. DOI: 10.5530/jscires.10.1.16 INTRODUCTION access publishing of their research output, and at the same time encouraging their researchers to publish in openly Responsible Research and Innovation (RRI) has become one accessible forms. -
From Coalition to Commons: Plan S and the Future of Scholarly Communication
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Copyright, Fair Use, Scholarly Communication, etc. Libraries at University of Nebraska-Lincoln 2019 From Coalition to Commons: Plan S and the Future of Scholarly Communication Rob Johnson Research Consulting Follow this and additional works at: https://digitalcommons.unl.edu/scholcom Part of the Intellectual Property Law Commons, Scholarly Communication Commons, and the Scholarly Publishing Commons Johnson, Rob, "From Coalition to Commons: Plan S and the Future of Scholarly Communication" (2019). Copyright, Fair Use, Scholarly Communication, etc.. 157. https://digitalcommons.unl.edu/scholcom/157 This Article is brought to you for free and open access by the Libraries at University of Nebraska-Lincoln at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Copyright, Fair Use, Scholarly Communication, etc. by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Insights – 32, 2019 Plan S and the future of scholarly communication | Rob Johnson From coalition to commons: Plan S and the future of scholarly communication The announcement of Plan S in September 2018 triggered a wide-ranging debate over how best to accelerate the shift to open access. The Plan’s ten principles represent a call for the creation of an intellectual commons, to be brought into being through collective action by funders and managed through regulated market mechanisms. As it gathers both momentum and critics, the coalition must grapple with questions of equity, efficiency and sustainability. The work of Elinor Ostrom has shown that successful management of the commons frequently relies on polycentricity and adaptive governance. The Plan S principles must therefore function as an overarching framework within which local actors retain some autonomy, and should remain open to amendment as the scholarly communication landscape evolves. -
Open Access Availability of Scientific Publications
Analytical Support for Bibliometrics Indicators Open access availability of scientific publications Analytical Support for Bibliometrics Indicators Open access availability of scientific publications* Final Report January 2018 By: Science-Metrix Inc. 1335 Mont-Royal E. ▪ Montréal ▪ Québec ▪ Canada ▪ H2J 1Y6 1.514.495.6505 ▪ 1.800.994.4761 [email protected] ▪ www.science-metrix.com *This work was funded by the National Science Foundation’s (NSF) National Center for Science and Engineering Statistics (NCSES). Any opinions, findings, conclusions or recommendations expressed in this report do not necessarily reflect the views of NCSES or the NSF. The analysis for this research was conducted by SRI International on behalf of NSF’s NCSES under contract number NSFDACS1063289. Analytical Support for Bibliometrics Indicators Open access availability of scientific publications Contents Contents .............................................................................................................................................................. i Tables ................................................................................................................................................................. ii Figures ................................................................................................................................................................ ii Abstract ............................................................................................................................................................ -
Tracking Content Updates in Scopus (2011-2018): a Quantitative Analysis of Journals Per Subject Category and Subject Categories Per Journal Frédérique Bordignon
Tracking content updates in Scopus (2011-2018): a quantitative analysis of journals per subject category and subject categories per journal Frédérique Bordignon To cite this version: Frédérique Bordignon. Tracking content updates in Scopus (2011-2018): a quantitative analysis of journals per subject category and subject categories per journal. 17th INTERNATIONAL CON- FERENCE ON SCIENTOMETRICS & INFORMETRICS, ISSI, Sep 2019, Rome, Italy. pp.1630. hal-02281351 HAL Id: hal-02281351 https://hal-enpc.archives-ouvertes.fr/hal-02281351 Submitted on 9 Sep 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Tracking content updates in Scopus (2011-2018): a quantitative analysis of journals per subject category and subject categories per journal Frederique Bordignon 1 1 [email protected] Ecole des Ponts ParisTech, Direction de la Documentation, Champs-sur-Marne, France Abstract The aim of this study is to track Scopus content updates since 2011 and more particularly the distribution of journals into subject areas. An unprecedented corpus of data related to sources indexed in Scopus has been created and analyzed. Data shows important fluctuations regarding the number of journals per category and the number of categories assigned to journals. -
Scientific Literature Databases and Citation Quality Indicators
International Society for Soil Mechanics and Geotechnical Engineering Société Internationale de Mécanique des Sols et de la Géotechnique SCIENTIFIC LITERATURE DATABASES AND CITATION QUALITY INDICATORS A REPORT FOR THE BOARD OF THE INTERNATIONAL SOCIETY FOR SOIL MECHANICS AND FOUNDATION ENGINEERING Antonio Gens & Pierre Delage August 2015 1. Introduction It is a fact of the current academic environment that the evaluation of individual researchers, funding proposals and even Departments and Universities resort to quantitative indicators related to publication metrics that in turn are based on citation statistics. The availability of rather comprehensive databases incorporating citation data allows the use of those instruments in a generally straightforward manner. Thus, research visibility and academic hiring and promotion have become strongly linked to citation counts. Of course, evaluation and ranking is not the only (or even the main) aim of citation indices; they are also essential for in-depth exploration of an academic discipline or research topic. As Eugene Garfield, the father of citation indexing of academic literature, wrote: “Citations are the formal, explicit linkages between papers that have particular points in common. A citation index is built around these linkages. It lists publications that have been cited and identifies the sources of the citations. Anyone conducting a literature search can find from one to dozens of additional papers on a subject just by knowing one that has been cited. And every paper that is found provides a list of new citations with which to continue the search.” However, in this document attention will be mainly focused on citations as indicators of quality and prestige. -
EGU)Published with It’S Partner Copernicus •Rapid Access Peer-Review → Publication As Discussion Paper Publishing
OpenOpen AccessAccess PublishingPublishing atat thethe EuropeanEuropean GeosciencesGeosciences UnionUnion est. 2002 I.I. IntroductionIntroduction III.III. InnovativeInnovative ApproachApproach toto PublishingPublishing This poster introduces the 14 Open Access Publications of the European Public Peer-Review and Interactive Public Discussion (see Box II) Geosciences Union (EGU)published with it’s partner Copernicus •Rapid access peer-review → publication as discussion paper Publishing. It briefly describes the EGU (II), it’s innovative publishing •Interactive public discussion: published referee comment, author approach (III), the 14 journals of the union (IV), along with comments & comments of the scientific community dissemination and archives of the journals (V) and ends with a •Paper revision & final acceptance → publication as final revised paper summary (VI). Box I provides an overview. Publication Strategy •Rigorous Peer-Review: ≥2 BoxBox I:I: QuickQuick FactsFacts II.II. TheThe EuropeanEuropean GeosciencesGeosciences UnionUnion independent referees •14 peer-reviewed open access •Immediate Open Access to all articles journals (IV) published by EGU The European Geosciences Union (EGU) is Europe’s premier geo- •Page charge waiver for first 3 years of •Authors & editors from >69 sciences union, dedicated to the pursuit of excellence in the geosciences a journal countries and the planetary and space sciences for the benefit of •Moderate page charges for authors •95,000 Pages published in 2010 humanity,worldwide. afterwards •Free access to all articles The EGU has over 11,000 members, a General Assembly with over •No extra charges for illustrations in •Interactive public peer-review 10,000 scientists each year, a diverse portfolio of 14 scientific journals colour etc. & discussion (Box II) that use an innovative “open access” format (III&IV), a number of •Author copyright under the Creative •Signatory of the Berlin thematic meetings, and education and outreach activities. -
View of to Begin With, AHC Treats Each Data Object As a Separate the Data to the User, Frequently Achieved Using Clustering
BioData Mining BioMed Central Research Open Access Fast approximate hierarchical clustering using similarity heuristics Meelis Kull*1,2 and Jaak Vilo*1,2 Address: 1Institute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonia and 2Quretec Ltd. Ülikooli 6a, 51003 Tartu, Estonia Email: Meelis Kull* - [email protected]; Jaak Vilo* - [email protected] * Corresponding authors Published: 22 September 2008 Received: 8 April 2008 Accepted: 22 September 2008 BioData Mining 2008, 1:9 doi:10.1186/1756-0381-1-9 This article is available from: http://www.biodatamining.org/content/1/1/9 © 2008 Kull and Vilo; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Agglomerative hierarchical clustering (AHC) is a common unsupervised data analysis technique used in several biological applications. Standard AHC methods require that all pairwise distances between data objects must be known. With ever-increasing data sizes this quadratic complexity poses problems that cannot be overcome by simply waiting for faster computers. Results: We propose an approximate AHC algorithm HappieClust which can output a biologically meaningful clustering of a large dataset more than an order of magnitude faster than full AHC algorithms. The key to the algorithm is to limit the number of calculated pairwise distances to a carefully chosen subset of all possible distances. We choose distances using a similarity heuristic based on a small set of pivot objects. -
CV Guidelines Regarding Publications
Guidelines for CV: Publications/Creative Activity Index Medicus: http://www2.bg.am.poznan.pl/czasopisma/medicus.php?lang=eng Reference in AHSL: American Medical Association (AMA) Manual of Style, 9th Edition (in reference section behind main desk) *Per Dave Piper, AHSL, underlining of titles is obsolete; italicization is preferred. Below guidelines were established for CoM Annual Report, not CVs in particular, but very similar. Books (scholarly books and monographs, authored or edited, conference proceedings): Author(s)/Editor(s)1; Book title (published conference proceedings go here – include conference title, dates & location); Publisher; Place of publication; Year of publication; Other identifying info Example – book/authors: Alpert JS, Ewy GA; Manual of Cardiovascular Diagnosis and Therapy; Lippincott, Williams & Wilkins; Philadelphia, PA; 2002; 5th edition Example – book/editors: Becker RC, Alpert JS, eds; Cardiovascular Medicine – Practice and Management; Arnold Publishers; London, England; 2001 Chapters (chapters in scholarly books and monographs): Author(s)1; Chapter title; Pages3; Book title; Publisher; Place of publication; Year of publication2; (Other identifying info) Example – Book chapter: Alpert JS, Sabik JF, Cosgrove DM; Mitral valve disease; pp 483-508; In Textbook of Cardiovascular Medicine; Lippincott, Williams & Wilkins; Philadelphia, PA; 2002; Topol, EJ, ed.; 2nd edition Example – Monograph: Alpert JS; Recent advances in the management of patients with acute myocardial infarction; 76:81-172; Monograph published in -
Conducting a Successful Literature Search: a Researcher's Guide To
Conducting a successful literature search: A researcher’s guide to tools, terms and techniques Finding high-quality information can be a challenge. Sometimes you need help, but you aren’t able to speak directly with an expert. Reference these cards when you need quick support—think of this as a Librarian in your back pocket! 1. Keywords, Operators & Filters 2. Search Tools 3. Types of Literature 4. Evaluate Information 5. Organize Research Conducting a successful literature search: A researcher’s guide to tools, terms and techniques 1. Keywords, operators and filters Brainstorm Expand Use Refine keywords your keywords boolean operators your search results These are the main ideas of your Look at the subject headings of the Insert AND, OR, and NOT into your Filters in the database allow you to research question/topic sentence. materials you find and use those search to broaden or narrow it. narrow a search by year, content type, etc. terms as applicable. For example: Or look up your keywords in a PTSD OR Post Traumatic Stress subject-specific database thesaurus Disorder AND soldiers NOT Navy. to find predefined terms (called “controlled vocabulary”). At the library: Consult a liaison librarian or subject specialist. 1 Conducting a successful literature search: A researcher’s guide to tools, terms and techniques 2. Search tools Select the best tools: Abstract and Full-text database Search box on Library catalog Web search engine citation database When you’re ready to dive library homepage When looking for items housed When looking for popular and Short descriptions (abstracts) deeper into research, seek out Discover your library’s full physically in the library (as well widely-available content, web of research content so you searchable, multidisciplinary catalog to view a wide array of as some electronic items). -
Do You Speak Open Science? Resources and Tips to Learn the Language
Do You Speak Open Science? Resources and Tips to Learn the Language. Paola Masuzzo1, 2 - ORCID: 0000-0003-3699-1195, Lennart Martens1,2 - ORCID: 0000- 0003-4277-658X Author Affiliation 1 Medical Biotechnology Center, VIB, Ghent, Belgium 2 Department of Biochemistry, Ghent University, Ghent, Belgium Abstract The internet era, large-scale computing and storage resources, mobile devices, social media, and their high uptake among different groups of people, have all deeply changed the way knowledge is created, communicated, and further deployed. These advances have enabled a radical transformation of the practice of science, which is now more open, more global and collaborative, and closer to society than ever. Open science has therefore become an increasingly important topic. Moreover, as open science is actively pursued by several high-profile funders and institutions, it has fast become a crucial matter to all researchers. However, because this widespread interest in open science has emerged relatively recently, its definition and implementation are constantly shifting and evolving, sometimes leaving researchers in doubt about how to adopt open science, and which are the best practices to follow. This article therefore aims to be a field guide for scientists who want to perform science in the open, offering resources and tips to make open science happen in the four key areas of data, code, publications and peer-review. The Rationale for Open Science: Standing on the Shoulders of Giants One of the most widely used definitions of open science originates from Michael Nielsen [1]: “Open science is the idea that scientific knowledge of all kinds should be openly shared as early as is practical in the discovery process”. -
Downloads Presented on the Abstract Page
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.27.063578; this version posted April 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A systematic examination of preprint platforms for use in the medical and biomedical sciences setting Jamie J Kirkham1*, Naomi Penfold2, Fiona Murphy3, Isabelle Boutron4, John PA Ioannidis5, Jessica K Polka2, David Moher6,7 1Centre for Biostatistics, Manchester Academic Health Science Centre, University of Manchester, Manchester, United Kingdom. 2ASAPbio, San Francisco, CA, USA. 3Murphy Mitchell Consulting Ltd. 4Université de Paris, Centre of Research in Epidemiology and Statistics (CRESS), Inserm, Paris, F-75004 France. 5Meta-Research Innovation Center at Stanford (METRICS) and Departments of Medicine, of Epidemiology and Population Health, of Biomedical Data Science, and of Statistics, Stanford University, Stanford, CA, USA. 6Centre for Journalology, Clinical Epidemiology Program, Ottawa Hospital Research Institute, Ottawa, Canada. 7School of Epidemiology and Public Health, Faculty of Medicine, University of Ottawa, Ottawa, Canada. *Corresponding Author: Professor Jamie Kirkham Centre for Biostatistics Faculty of Biology, Medicine and Health The University of Manchester Jean McFarlane Building Oxford Road Manchester, M13 9PL, UK Email: [email protected] Tel: +44 (0)161 275 1135 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.27.063578; this version posted April 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.