Laboratory Diagnosis of Turner Syndrome
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Timing of Centrosome Separation Is Important for Accurate Chromosome Segregation
M BoC | ARTICLE Timing of centrosome separation is important for accurate chromosome segregation William T. Silkwortha, Isaac K. Nardia,*, Raja Paulb, Alex Mogilnerc, and Daniela Ciminia aDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA 24061; bIndian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India; cDepartment of Neurobiology, Physiology and Behavior and Department of Mathematics, University of California, Davis, Davis, CA 95616 ABSTRACT Spindle assembly, establishment of kinetochore attachment, and sister chroma- Monitoring Editor tid separation must occur during mitosis in a highly coordinated fashion to ensure accurate Yixian Zheng chromosome segregation. In most vertebrate cells, the nuclear envelope must break down to Carnegie Institution allow interaction between microtubules of the mitotic spindle and the kinetochores. It was Received: Feb 2, 2011 previously shown that nuclear envelope breakdown (NEB) is not coordinated with centrosome Revised: Nov 17, 2011 separation and that centrosome separation can be either complete at the time of NEB or can Accepted: Nov 22, 2011 be completed after NEB. In this study, we investigated whether the timing of centrosome separation affects subsequent mitotic events such as establishment of kinetochore attach- ment or chromosome segregation. We used a combination of experimental and computa- tional approaches to investigate kinetochore attachment and chromosome segregation in cells with complete versus incomplete spindle pole separation at NEB. We found that cells with incomplete spindle pole separation exhibit higher rates of kinetochore misattachments and chromosome missegregation than cells that complete centrosome separation before NEB. Moreover, our mathematical model showed that two spindle poles in close proximity do not “search” the entire cellular space, leading to formation of large numbers of syntelic at- tachments, which can be an intermediate stage in the formation of merotelic kinetochores. -
Diagnostic Investigations in Individuals with Mental Retardation: a Systematic Literature Review of Their Usefulness
European Journal of Human Genetics (2005) 13, 6–25 & 2005 Nature Publishing Group All rights reserved 1018-4813/05 $30.00 www.nature.com/ejhg REVIEW Diagnostic investigations in individuals with mental retardation: a systematic literature review of their usefulness Clara DM van Karnebeek1,2, Maaike CE Jansweijer2, Arnold GE Leenders1, Martin Offringa1 and Raoul CM Hennekam*,1,2 1Department of Paediatrics/Emma Children’s Hospital, Academic Medical Center, Amsterdam, The Netherlands; 2Department of Clinical Genetics, Academic Medical Center, Amsterdam, The Netherlands There are no guidelines available for diagnostic studies in patients with mental retardation (MR) established in an evidence-based manner. Here we report such study, based on information from original studies on the results with respect to detected significant anomalies (yield) of six major diagnostic investigations, and evaluate whether the yield differs depending on setting, MR severity, and gender. Results for cytogenetic studies showed the mean yield of chromosome aberrations in classical cytogenetics to be 9.5% (variation: 5.4% in school populations to 13.3% in institute populations; 4.1% in borderline- mild MR to 13.3% in moderate-profound MR; more frequent structural anomalies in females). The median yield of subtelomeric studies was 4.4% (also showing female predominance). For fragile X screening, yields were 5.4% (cytogenetic studies) and 2.0% (molecular studies) (higher yield in moderate-profound MR; checklist use useful). In metabolic investigations, the mean yield of all studies was 1.0% (results depending on neonatal screening programmes; in individual populations higher yield for specific metabolic disorders). Studies on neurological examination all showed a high yield (mean 42.9%; irrespective of setting, degree of MR, and gender). -
GENETICS and GENOMICS Ed
GENETICS AND GENOMICS Ed. Csaba Szalai, PhD GENETICS AND GENOMICS Editor: Csaba Szalai, PhD, university professor Authors: Chapter 1: Valéria László Chapter 2, 3, 4, 6, 7: Sára Tóth Chapter 5: Erna Pap Chapter 8, 9, 10, 11, 12, 13, 14: Csaba Szalai Chapter 15: András Falus and Ferenc Oberfrank Keywords: Mitosis, meiosis, mutations, cytogenetics, epigenetics, Mendelian inheritance, genetics of sex, developmental genetics, stem cell biology, oncogenetics, immunogenetics, human genomics, genomics of complex diseases, genomic methods, population genetics, evolution genetics, pharmacogenomics, nutrigenetics, gene environmental interaction, systems biology, bioethics. Summary The book contains the substance of the lectures and partly of the practices of the subject of ‘Genetics and Genomics’ held in Semmelweis University for medical, pharmacological and dental students. The book does not contain basic genetics and molecular biology, but rather topics from human genetics mainly from medical point of views. Some of the 15 chapters deal with medical genetics, but the chapters also introduce to the basic knowledge of cell division, cytogenetics, epigenetics, developmental genetics, stem cell biology, oncogenetics, immunogenetics, population genetics, evolution genetics, nutrigenetics, and to a relative new subject, the human genomics and its applications for the study of the genomic background of complex diseases, pharmacogenomics and for the investigation of the genome environmental interactions. As genomics belongs to sytems biology, a chapter introduces to basic terms of systems biology, and concentrating on diseases, some examples of the application and utilization of this scientific field are also be shown. The modern human genetics can also be associated with several ethical, social and legal issues. The last chapter of this book deals with these issues. -
Double Mitotic Nondisjunction
J Med Genet: first published as 10.1136/jmg.15.5.395 on 1 October 1978. Downloaded from Case reports 395 well be that, in this family, 18q- is unable to segre- mosaicism. Chromosome 18 trisomy was found gate properly during gametogenesis and early post- only in 18% of lymphocytes and not in skin zygotic mitosis, leading to an unbalanced state and fibroblasts. A likely interpretation is double non- +(18q-). disjunction in a single lymphocyte precursor HAROLD N. BASs, FELICE WEBER-PARISI, AND of a trisomy 21 embryo. A brief review of other ROBERT S. SPARKES cases of mitotic multiple nondisjunction and Department ofPediatrics (Genetics), Kaiser- double aneuploid mosaicism is presented. Permanente Medical Center, Panorama City, California 91402; and Division ofMedical Genetics, Chromosomal mosaicism occurs in a small percentage Departments ofMedicine, Pediatrics, andPsychiatry, of patients with Down's syndrome. The vast majority UCLA Centerfor the Health Sciences, Los Angeles, of these mosaics have a normal cell line in addition to California 90024, USA the trisomy 21 cell line. This report describes the first reported instance, to our knowledge, of an unusual References type of double trisomy mosaicism in lymphocytes Castel, Y., Riviere, D., Nawrocki, T., Le Fur, J-M., and Toudic, involving chromosomes 18 and 21. L. (1975). Trisomie partielie 18q par translocation familiale t(l8q-;13q+). Lyon Medical, 233, 211-217. Francke, U. (1972). Quinacrine mustard fluorescence of human chromosomes: characterization of unusual translocations. Case report American Journal ofHuman Genetics, 24, 189-213. Fujita, K., and Fujita, H. M. (1974). An extra small submetacentric The proposita was referred for chromosome analysis chromosome: possible partial trisomy 18. -
Epigenetic Centromere Specification Directs Aurora B Accumulation but Is Insufficient to Efficiently Correct Mitotic Errors
JCB: Report Epigenetic centromere specification directs aurora B accumulation but is insufficient to efficiently correct mitotic errors Emily A. Bassett,1,2 Stacey Wood,2 Kevan J. Salimian,1,2 Sandya Ajith,1,2 Daniel R. Foltz,3 and Ben E. Black1,2 1Graduate Group in Biochemistry and Molecular Biophysics and 2Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104 3Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908 he nearly ubiquitous presence of repetitive centro- of the kinetochore is intact at a human neocentromere mere DNA sequences across eukaryotic species is in lacking repetitive -satellite DNA. However, aurora B is Tparadoxical contrast to their apparent functional dis- inappropriately silenced as a consequence of the altered pensability. Centromeric chromatin is spatially delineated geometry of the neocentromere, thereby compromising into the kinetochore-forming array of centromere protein A the error correction mechanism. This suggests a model (CENP-A)–containing nucleosomes and the inner cen wherein the neocentromere represents a primordial inher- tromeric heterochromatin that lacks CENP-A but recruits itance locus that requires subsequent generation of a the aurora B kinase that is necessary for correcting erro- robust inner centromere compartment to enhance fidelity neous attachments to the mitotic spindle. We found that of chromosome transmission. the self-perpetuating network of CENPs at the foundation Introduction -
Aneuploidy of Chromosome 8 and C-MYC Amplification in Individuals from Northern Brazil with Gastric Adenocarcinoma
ANTICANCER RESEARCH 25: 4069-4074 (2005) Aneuploidy of Chromosome 8 and C-MYC Amplification in Individuals from Northern Brazil with Gastric Adenocarcinoma DANIELLE QUEIROZ CALCAGNO1, MARIANA FERREIRA LEAL1,2, SYLVIA SATOMI TAKENO2, PAULO PIMENTEL ASSUMPÇÃO4, SAMIA DEMACHKI3, MARÍLIA DE ARRUDA CARDOSO SMITH2 and ROMMEL RODRÍGUEZ BURBANO1,2 1Human Cytogenetics and Toxicological Genetics Laboratory, Department of Biology, Center of Biological Sciences, Federal University of Pará, Belém, PA; 2Discipline of Genetics, Department of Morphology, Federal University of São Paulo, São Paulo, SP; 3Department of Pathology and 4Surgery Service, João de Barros Barreto University Hospital, Federal University of Pará, Belém, PA, Brazil Abstract. Background: Gastric cancer is the third most second most important cause of death in the world (2). In frequent type of neoplasia. In northern Brazil, the State of Pará northern Brazil, the State of Pará presents a high incidence has a high incidence of this type of neoplasia. Limited data are of this type of neoplasia, and its capital, Belém, was ranked available so far on the genetic events involved in this disease. eleventh in number of gastric cancers per inhabitant among Materials and Methods: Dual-color fluorescence in situ all cities in the world with cancer records (2). Food factors hybridization (FISH) for the C-MYC gene and chromosome 8 may be related to the high incidence of this neoplasia in centromere was performed in 11 gastric adenocarcinomas. Pará, especially the high consumption of salt-conserved Results: All cases showed aneuploidy of chromosome 8 and food, the limited use of refrigerators and the low C-MYC amplification, in both the diffuse and the intestinal consumption of fresh fruit and vegetables (3). -
Questions from Medical Biology and Genetics in Acad. Year 2019/2020 for 1 St Year Dentistry
Questions from Medical biology and Genetics in acad. year 2019/2020 for 1 st year Dentistry I. The cell 1. Molecular structure of the biological membranes 2. Types of intercellular communications (endocrine, paracrine, autocrine and neural) 3. Types and function of receptors and signal molecules, first and second messengers, amplification of signal 4. Transport through membranes, mechanisms 5. Endoplasmic reticulum, structure and function 6. Ribosomes, their structure and function 7. Golgi complex, its structure, metabolic and distributional function 8. Lysosomes, peroxisomes, proteasomes and their function 9. Function and biogenesis mitochondria, characteristics of its genome 10. Functional organization of the cytoskeleton (microtubules, microfillaments) 11. Centromere, kinetochore, system permitting movement of chromosomes in cell division 12. Mitosis as a part of cell cycle 13. Cell cycle - phases, regulatory molecules, check points 14. Processes taking part in cell cycle regulation, examples 15. G1 check point of cell cycle, factors ruling transfer G1/S in cell cycle 16. G2 check point of cell cycle, factors ruling transfer G2/M in cell cycle 17. Mitotic check point, molecular mechanism of its regulation 18. Relation protooncogene – oncogene in regulation of cell cycle 19. Oncogenesis, molecular characteristics of malignant transformation of cell 20. Types of oncogenes, mechanisms changing protooncogene to oncogene 21. Mechanisms of protooncogens participation in deregulation of cell cycle 22. Nucleus, its structure and function 23. Totipotence of cells, stem cells, tissue engineering and regenerative medicine 24. Alternative usage of genetic information in differentiation of cell 25. Apoptosis - programmed cell death (telomeric sequences) 26. Mechanism of activation of apoptosis through ”death“ receptors 27. Mechanism of activation of apoptosis through mitochondrial pathway 28. -
Haplotype-Aware Inference of Human Chromosome Abnormalities Daniel Ariad 1*, Stephanie M
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.18.444721; this version posted May 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Ariad et al. Haplotype-aware inference of human chromosome abnormalities Daniel Ariad 1*, Stephanie M. Yan 1, Andrea R. Victor2,FrankL.Barnes2, Christo G. Zouves2, Manuel Viotti 3 and Rajiv C. McCoy 1* Abstract Extra or missing chromosomes—a phenomenon termed aneuploidy—frequently arises during human meiosis and embryonic mitosis and is the leading cause of pregnancy loss, including in the context of in vitro fertilization (IVF). While meiotic aneuploidies a↵ect all cells and are deleterious, mitotic errors generate mosaicism, which may be compatible with healthy live birth. Large-scale abnormalities such as triploidy and haploidy also contribute to adverse pregnancy outcomes, but remain hidden from standard sequencing-based approaches to preimplantation genetic testing (PGT-A). The ability to reliably distinguish meiotic and mitotic aneuploidies, as well as abnormalities in genome-wide ploidy may thus prove valuable for enhancing IVF outcomes. Here, we describe a statistical method for distinguishing these forms of aneuploidy based on analysis of low-coverage whole-genome sequencing data, which is the current standard in the field. Our approach overcomes the sparse nature of the data by leveraging allele frequencies and linkage disequilibrium (LD) measured in a population reference panel. The method, which we term LD-informed PGT-A (LD-PGTA), retains high accuracy down to coverage as low as 0.05 and at higher coverage can also distinguish between meiosis I and meiosis II errors based on signatures⇥ spanning the centromeres. -
A Acentric Fragment Linear One Telomere Radiation One Broken End Endonuclease Break-Inducing Mutagen
Chromosome Res https://doi.org/10.1007/s10577-020-09636-z REVIEW Mechanisms driving acentric chromosome transmission Brandt Warecki & William Sullivan Received: 2 June 2020 /Revised: 16 July 2020 /Accepted: 19 July 2020 # Springer Nature B.V. 2020 Abstract The kinetochore-microtubule association is a Keywords Acentric . chromosome fragment . mitosis . core, conserved event that drives chromosome transmis- microtubules . double minutes . genome stability sion during mitosis. Failure to establish this association on even a single chromosome results in aneuploidy Abbreviations leading to cell death or the development of cancer. APC/C Anaphase-promoting complex However, although many chromosomes lacking centro- PtK cells Potorous tridactylus cells meres, termed acentrics, fail to segregate, studies in a UFBs Ultrafine DNA bridges number of systems reveal robust alternative mecha- CHMP4C Charged multivesicular body nisms that can drive segregation and successful pole- protein 4C ward transport of acentrics. In contrast to the canonical ESCRT-III Endosomal sorting complexes mechanism that relies on end-on microtubule attach- required for transport-III ments to kinetochores, mechanisms of acentric trans- mission largely fall into three categories: direct attach- ments to other chromosomes, kinetochore-independent lateral attachments to microtubules, and long-range teth- er-based attachments. Here, we review these “non-ca- Kinetochore-microtubule interactions drive nonical” methods of acentric chromosome transmission. poleward chromosome transmission Just as the discovery and exploration of cell cycle checkpoints provided insight into both the origins of In order to produce genetically identical daughter cells cancer and new therapies, identifying mechanisms and following mitosis, a cell must first duplicate its genome structures specifically involved in acentric segregation and then equally partition genetic material to its daugh- may have a significant impact on basic and applied ter cells through chromatid segregation. -
Physical Assessment of the Newborn: Part 3
Physical Assessment of the Newborn: Part 3 ® Evaluate facial symmetry and features Glabella Nasal bridge Inner canthus Outer canthus Nasal alae (or Nare) Columella Philtrum Vermillion border of lip © K. Karlsen 2013 © K. Karlsen 2013 Forceps Marks Assess for symmetry when crying . Asymmetry cranial nerve injury Extent of injury . Eye involvement ophthalmology evaluation © David A. ClarkMD © David A. ClarkMD © K. Karlsen 2013 © K. Karlsen 2013 The S.T.A.B.L.E® Program © 2013. Handout may be reproduced for educational purposes. 1 Physical Assessment of the Newborn: Part 3 Bruising Moebius Syndrome Congenital facial paralysis 7th cranial nerve (facial) commonly Face presentation involved delivery . Affects facial expression, sense of taste, salivary and lacrimal gland innervation Other cranial nerves may also be © David A. ClarkMD involved © David A. ClarkMD . 5th (trigeminal – muscles of mastication) . 6th (eye movement) . 8th (balance, movement, hearing) © K. Karlsen 2013 © K. Karlsen 2013 Position, Size, Distance Outer canthal distance Position, Size, Distance Outer canthal distance Normal eye spacing Normal eye spacing inner canthal distance = inner canthal distance = palpebral fissure length Inner canthal distance palpebral fissure length Inner canthal distance Interpupillary distance (midpoints of pupils) distance of eyes from each other Interpupillary distance Palpebral fissure length (size of eye) Palpebral fissure length (size of eye) © K. Karlsen 2013 © K. Karlsen 2013 Position, Size, Distance Outer canthal distance -
Bone Marrow Karyotypes of Children with Nonlymphocytic Leukemia
Pediat. Res. 13: 1247-1254 (1979) Chromosome abnormalities nonlymphotic leukemia leukemia, childhood Bone Marrow Karyotypes of Children with Nonlymphocytic Leukemia A. HAGEMEIJER, G. E. VAN ZANEN, E. M. E. SMIT, AND K. HAHLEN Department of Cell Biology and Genetics (A. H.. E. M.E. S.) and Department of Pediatric Oncology (G. E. K Z.. K H.) Sophia Children's Hospital, Erasmus University, Rotterdam, The Netherlands Summary studies with modern banding techniques. The Ph' chromosome may be found in some cases if childhbod CML, and its presence Bone marrow (BM) karyotypes from 16 consecutive children can differentiate the adult type of CML with its more protracted presenting with nonlymphocytic leukemia were established with course, from the juvenile variant. Nonrandom acquired abnor- the use of banding techniques, before therapy. The two patients malities have also been reported in a small number of children with chronic myeloid leukemia (CML) showed the Philadelphia with ANLL: monosomy 7 was reported three times in AML, (Phl) translocation (9q+;22q-). Five of the 14 patients with an AMMoL, and EL (7, 10, 17) deletion 7q22 was found twice in acute nonlymphocytic leukemia (ANLL) presented no acquired AML (9), and monosomy 9 was described once in AML (8). An cytogenetic abnormalities, but one of these five showed a high extensive report of cytogenetic abnormalities in childhood leuke- level of hypodiploidy. One patient with AML evidenced a variant mia has been published by Zuelzer et al. in 1976 (3 l), but it deals of the Phl chromosome originated as a translocation (12p+;22q-). mainly with acute lymphocytic leukemia; furthermore, this study Nonrandom abnormalities (-7; 7q-; +8; t(8;21); -21) were found started before the use of banding techniques, making the karyo- in six patients, isolated or in association with other aberrations. -
Severe Haemophilia a in a Preterm Girl With
Berendt et al. Italian Journal of Pediatrics (2020) 46:125 https://doi.org/10.1186/s13052-020-00892-7 CASE REPORT Open Access Severe haemophilia a in a preterm girl with turner syndrome - a case report from the prenatal period to early infancy (part I) Agnieszka Berendt1* , Monika Wójtowicz-Marzec1, Barbara Wysokińska2 and Anna Kwaśniewska1 Abstract Background: Bleedings are more frequent in the population of preterm children than among those born at term, much less in older children. The reasons for such bleedings in preterms include plasma factor deficiencies, immaturity of small vessels in the germinal matrix region, prenatal hypoxia or sepsis. They affect the brain tissue, the gastrointestinal tract and the respiratory system, or are manifested by prolonged bleedings from injection sites. Haemophilia is a rare cause of haemorrhages in the neonatal period, and in the female population it is even seen as an extremely rare disorder. Its aetiology in girls is diverse: inheriting defective genes from their parents, skewed X inactivation or a single X chromosome. Case presentation: The article presents a case of a preterm girl born in the 28th week of pregnancy, who was diagnosed with severe haemophilia A stemming from the absence of the X chromosome. The girl’s father is healthy, but her mother’s brother suffers from haemophilia. On the second day of the child’s life, a prolonged bleeding from the injection site was observed. A coagulation profile revealed prolonged APTT which pointed to haemophilia A diagnosis. Moreover, a marked clinical dysmorphy, female sex and a negative family history on the father’s side led the treating team to extend the diagnostic procedures to encompass karyotype evaluation.