Lipid Catabolism in Starved Yak Is Inhibited by Intravenous Infusion of Β-Hydroxybutyrate
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Amphibolic Nature of Krebs Cycle
Amphibolic nature of Krebs Cycle How what we are is what we eat • In aerobic organisms, the citric acid cycle is an amphibolic pathway, one that serves in both catabolic and anabolic processes. • Since the citric acid does both synthesis (anabolic) and breakdown (catabolic) activities, it is called an amphibolic pathway • The citric acid cycle is amphibolic (i.e it is both anabolic and catabolic in its function). • It is said to be an AMPHIBOLIC pathway, because it functions in both degradative or catabolic and biosynthetic or anabolic reactions (amphi = both) A central metabolic pathway or amphibolic pathway is a set of reactions which permit the interconversion of several metabolites, and represents the end of the catabolism and the beginning of anabolism • The KREBS CYCLE or citric acid cycle is a series of reactions that degrades acetyl CoA to yield carbon dioxide, and energy, which is used to produce NADH, H+ and FADH. • The KREBS CYCLE connects the catabolic pathways that begin with the digestion and degradation of foods in stages 1 and 2 with the oxidation of substrates in stage 3 that generates most of the energy for ATP synthesis. • The citric acid cycle is the final common pathway in the oxidation of fuel molecules. In stage 3 of metabolism, citric acid is a final common catabolic intermediate in the form of acetylCoA. • This is why the citric acid cycle is called a central metabolic pathway. Anaplerosis and Cataplerosis Anaplerosis is a series of enzymatic reactions in which metabolic intermediates enter the citric acid cycle from the cytosol. Cataplerosis is the opposite, a process where intermediates leave the citric acid cycle and enter the cytosol. -
Global Proteomics Analysis of the Response to Starvation in C. Elegans*DS
Research Author’s Choice © 2015 by The American Society for Biochemistry and Molecular Biology, Inc. This paper is available on line at http://www.mcponline.org Global Proteomics Analysis of the Response to Starvation in C. elegans*□S Mark Larance‡¶, Ehsan Pourkarimi‡¶, Bin Wang‡, Alejandro Brenes Murillo, Robert Kent, Angus I. Lamond‡§, and Anton Gartner‡§ Periodic starvation of animals induces large shifts in me- ment, however, requires feeding and progresses through four tabolism but may also influence many other cellular sys- developmental stages (L1-L4). The effect of starvation varies tems and can lead to adaption to prolonged starvation at these different developmental stages. Hatching of L1 stage conditions. To date, there is limited understanding of larvae in the absence of food leads to a starvation response how starvation affects gene expression, particularly at without overt morphogenesis that allows for ϳ2 weeks of the protein level. Here, we have used mass-spectro- survival (2). Mid- and late-stage L4 larvae, upon starvation, metry-based quantitative proteomics to identify global develop into adults but preserve resources by reducing germ changes in the Caenorhabditis elegans proteome due to cell proliferation and thereby holding a limited number of acute starvation of young adult animals. Measuring changes in the abundance of over 5,000 proteins, we embryos (3, 4). show that acute starvation rapidly alters the levels of Conserved genetic pathways have been identified that link hundreds of proteins, many involved in central metabolic nutrient availability to metabolic remodeling, stress resistance pathways, highlighting key regulatory responses. Surpris- pathways, and enhanced life span. Many of these pathways ingly, we also detect changes in the abundance of chro- overlap and include TOR, AMPK, autophagy, and insulin/ matin-associated proteins, including specific linker his- IGF-1 signaling. -
The Citric Acid Cycle the Catabolism of Acetyl-Coa
Al-Sham Private University Faculty Of Pharmacy The Citric Acid Cycle The Catabolism of Acetyl-CoA Lecturer Prof. Abboud Al-Saleh 1 Prof.Abboud AL-Saleh 10/1/2018 BIOMEDICAL IMPORTANCE • The citric acid cycle (Krebs cycle, tricarboxylic acid cycle) is a series of reactions in mitochondria that oxidize acetyl residues (as acetyl-CoA) and reduce coenzymes that upon reoxidation are linked to the formation of ATP. • TCA is the final common pathway for the aerobic oxidation of carbohydrate, lipid, and protein because glucose, fatty acids, and most amino acids are metabolized to acetyl-CoA or intermediates of the cycle. 2 Prof.Abboud AL-Saleh 10/1/2018 • TCA also has a central role in gluconeogenesis, lipogenesis, and interconversion of amino acids. Many of these processes occur in most tissues, but the liver is the only tissue in which all occur to a significant extent. • The repercussions are therefore profound when, for example, large numbers of hepatic cells are damaged as in acute hepatitis or as in cirrhosis. • Very few, if any, genetic abnormalities of TCA enzymes have been reported; such abnormalities would be incompatible with life or normal development 3 Prof.Abboud AL-Saleh 10/1/2018 Summary • The cycle starts with reaction between the acetyl moiety of acetyl-CoA and the four-carbon dicarboxylic acid oxaloacetate, forming a six-carbon tricarboxylic acid, citrate. • In the subsequent reactions, two molecules of CO2 are released and oxaloacetate is regenerated (Figure). • Only a small quantity of oxaloacetate is needed for the oxidation of a large quantity of acetyl-CoA. • oxaloacetate may be considered to play a catalytic role. -
Catabolism Iii
Nitrogen Catabolism Glycogenolysis Protein Fat catabolism Catabolism Fatty Acid Amino-acid GlycolysisDegradation catabolism Pyruvate Oxidation Krebs' Cycle Phosphorylation Oxidative CATABOLISM III: Digestion and Utilization of Proteins • Protein degradation • Protein turnover – The ubiquitin pathway – Protein turnover is tightly regulated • Elimination of nitrogen – By fish, flesh and fowl – How is the N of amino acids liberated and eliminated? • How are amino acids oxidized for energy 1 Protein Catabolism Sources of AMINO ACIDS: •Dietary amino acids that exceed body’s protein synthesis needs •Excess amino acids from protein turnover (e.g., proteolysis and regeneration of proteins) •Proteins in the body can be broken down (muscle wasting) to supply amino acids for energy when carbohydrates are scarce (starvation, diabetes mellitus). •Carnivores use amino acids for energy more than herbivores, plants, and most microorganisms Protein Catabolism The Digestion Pathway • Pro-enzymes are secreted (zymogens) and the environment activates them by specific proteolysis. • Pepsin hydrolyzes protein into peptides in the stomach. • Trypsin and chymotrypsin hydrolyze proteins and larger peptides into smaller peptides in the small intestine. • Aminopeptidase and carboxypeptidases A and B degrade peptides into amino acids in the small intestine. 2 Protein Catabolism The Lysosomal Pathway • Endocytosis, either receptor-mediated, phagocytosis, or pinocytosis engulfs extra- cellular proteins into vesicles. • These internal vesicles fuse as an early endosome. • This early endosome is acidified by the KFERQ Substrates vATPase (“v” for vesicular). • Components that are recycled, like receptors, HSPA8 are sequestered in smaller vesicles to create Co-chaperones the multivesicular body (MVB), sometimes called a late endosome. • If set for degradation, it will fuse with a KFERQ primary lysosome (red) which contains many cathepsin-type proteases. -
Transcriptomic Analysis Reveals Niche Gene Expression Effects of Beta
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.19.427259; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Transcriptomic analysis reveals niche gene expression effects of beta- hydroxybutyrate in primary myotubes Philip M. M. Ruppert1, Guido J. E. J. Hooiveld1, Roland W. J. Hangelbroek1,2, Anja Zeigerer3,4, Sander Kersten1,$ 1Nutrition, Metabolism and Genomics Group, Division of Human Nutrition and Health, Wageningen University, Wageningen, The Netherlands; 2Euretos B.V., Utrecht, The Netherlands 3Institute for Diabetes and Cancer, Helmholtz Center Munich, 85764 Neuherberg, Germany, Joint Heidelberg-IDC Translational Diabetes Program, Inner Medicine 1, Heidelberg University Hospital, Heidelberg, Germany; 4German Center for Diabetes Research (DZD), 85764 Neuherberg, Germany $ To whom correspondence should be addressed: Sander Kersten, PhD Division of Human Nutrition and Health Wageningen University Stippeneng 4 6708 WE Wageningen The Netherlands Phone: +31 317 485787 Email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.01.19.427259; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abbreviations: βOHB β-hydroxybutyrate AcAc acetoacetate Kbhb lysine β-hydroxybutyrylation HDAC histone deacetylase bioRxiv preprint doi: https://doi.org/10.1101/2021.01.19.427259; this version posted January 20, 2021. -
Fatty Acid Biosynthesis
BI/CH 422/622 ANABOLISM OUTLINE: Photosynthesis Carbon Assimilation – Calvin Cycle Carbohydrate Biosynthesis in Animals Gluconeogenesis Glycogen Synthesis Pentose-Phosphate Pathway Regulation of Carbohydrate Metabolism Anaplerotic reactions Biosynthesis of Fatty Acids and Lipids Fatty Acids contrasts Diversification of fatty acids location & transport Eicosanoids Synthesis Prostaglandins and Thromboxane acetyl-CoA carboxylase Triacylglycerides fatty acid synthase ACP priming Membrane lipids 4 steps Glycerophospholipids Control of fatty acid metabolism Sphingolipids Isoprene lipids: Cholesterol ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1 ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1. Biosynthesis of fatty acids 2. Regulation of fatty acid degradation and synthesis 3. Assembly of fatty acids into triacylglycerol and phospholipids 4. Metabolism of isoprenes a. Ketone bodies and Isoprene biosynthesis b. Isoprene polymerization i. Cholesterol ii. Steroids & other molecules iii. Regulation iv. Role of cholesterol in human disease ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Degradation Synthesis Ketone body Isoprene Utilization Biosynthesis 2 Catabolism Fatty Acid Biosynthesis Anabolism • Contrast with Sugars – Lipids have have hydro-carbons not carbo-hydrates – more reduced=more energy – Long-term storage vs short-term storage – Lipids are essential for structure in ALL organisms: membrane phospholipids • Catabolism of fatty acids –produces acetyl-CoA –produces reducing -
A Glucose-Starvation Response Regulates the Diffusion of Macromolecules Ryan P
A glucose-starvation response regulates the diffusion of macromolecules Ryan P. Joyner, Jeffrey H. Tang, Jonne Helenius, Elisa Dultz, Christiane Brune, Liam J. Holt, Sébastien Huet, Daniel J. Müller, Karsten Weis To cite this version: Ryan P. Joyner, Jeffrey H. Tang, Jonne Helenius, Elisa Dultz, Christiane Brune, et al.. Aglucose- starvation response regulates the diffusion of macromolecules. eLife, eLife Sciences Publication, 2016, 5, pp.e09376. 10.7554/eLife.09376. hal-01295659 HAL Id: hal-01295659 https://hal-univ-rennes1.archives-ouvertes.fr/hal-01295659 Submitted on 4 Oct 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. RESEARCH ARTICLE A glucose-starvation response regulates the diffusion of macromolecules Ryan P Joyner1, Jeffrey H Tang2, Jonne Helenius3, Elisa Dultz1†, Christiane Brune1, Liam J Holt4, Sebastien Huet5, Daniel J Mu¨ ller3, Karsten Weis1,2* 1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 2Institute of Biochemistry, Department of Biology, ETH Zurich, Zu¨ rich, Switzerland; 3Department of Biosystems Science and Engineering, ETH Zurich, Zu¨ rich, Switzerland; 4Institute for Systems Genetics, New York University School of Medicine, New York, United States; 5CNRS, UMR 6290, Institut Ge´ne´tique et De´veloppement, University of Rennes, Rennes, France Abstract The organization and biophysical properties of the cytosol implicitly govern molecular interactions within cells. -
Nutrient Limitation Inactivates Mrc1-To-Cds1 Checkpoint Signalling in Schizosaccharomyces Pombe
cells Article Nutrient Limitation Inactivates Mrc1-to-Cds1 Checkpoint Signalling in Schizosaccharomyces pombe Jessica Fletcher 1,2 ID , Liam Griffiths 1 and Thomas Caspari 1,3,* ID 1 School of Medical Sciences, Bangor University, Bangor LL57 2UW, UK; j.f.fl[email protected] (J.F.); lbgriffi[email protected] (L.G.) 2 Medical School, Swansea University, Swansea SA2 8PP, UK 3 Postgraduate Doctoral Studies, Paracelsus Medical University, 5020 Salzburg, Austria * Correspondence: [email protected]; Tel.: +43-662-2420-80245 Received: 11 February 2018; Accepted: 21 February 2018; Published: 23 February 2018 Abstract: The S. pombe checkpoint kinase, Cds1, protects the integrity of stalled DNA replication forks after its phosphorylation at threonine-11 by Rad3 (ATR). Modified Cds1 associates through its N-terminal forkhead-associated domain (FHA)-domain with Mrc1 (Claspin) at stalled forks. We report here that nutrient starvation results in post-translational changes to Cds1 and the loss of Mrc1. A drop in glucose after a down-shift from 3% to 0.1–0.3%, or when cells enter the stationary phase, triggers a sharp decline in Mrc1 and the accumulation of insoluble Cds1. Before this transition, Cds1 is transiently activated and phosphorylated by Rad3 when glucose levels fall. Because this coincides with the phosphorylation of histone 2AX at S129 by Rad3, an event that occurs towards the end of every unperturbed S phase, we suggest that a glucose limitation promotes the exit from the S phase. Since nitrogen starvation also depletes Mrc1 while Cds1 is post-translationally modified, we suggest that nutrient limitation is the general signal that promotes exit from S phase before it inactivates the Mrc1–Cds1 signalling component. -
Limitation of Phosphate Assimilation Maintains Cytoplasmic
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.05.284430; this version posted September 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Limitation of phosphate assimilation maintains cytoplasmic 2 magnesium homeostasis 3 4 Roberto E. Bruna1,2, Christopher G. Kendra1,2, Eduardo A. Groisman3,4, Mauricio 5 H. Pontes1,2* 6 7 1 Department of Pathology and Laboratory Medicine, and 2 Department of Microbiology 8 and Immunology, Penn State College of Medicine, 500 University Drive, P.O. Box 9 17033, Hershey, PA, 17033, USA 10 3 Department of Microbial Pathogenesis, Yale School of Medicine, 295 Congress 11 Avenue, New Haven, CT 06536, USA 12 4 Yale Microbial Sciences Institute, P.O. Box 27389, West Haven, CT, 06516, USA 13 14 *Address correspondence to Mauricio H. Pontes, 15 [email protected] 16 17 Classification 18 Biology, Microbiology 19 20 Keywords 21 Phosphate, ATP, Magnesium, MgtC, Salmonella 22 23 24 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.05.284430; this version posted September 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 25 Author Contributions 26 R.E.B., C.G.K., E.A.G. and M.H.P. -
Role of the Evolutionarily Conserved Starvation Response in Anorexia
Molecular Psychiatry (2011) 16, 595–603 & 2011 Macmillan Publishers Limited All rights reserved 1359-4184/11 www.nature.com/mp FEATURE REVIEW Role of the evolutionarily conserved starvation response in anorexia nervosa DS Dwyer1,2, RY Horton1 and EJ Aamodt3 1Department of Psychiatry, LSU Health Sciences Center, Shreveport, LA, USA; 2Department of Pharmacology, Toxicology and Neuroscience, LSU Health Sciences Center, Shreveport, LA, USA and 3Department of Biochemistry and Molecular Biology, LSU Health Sciences Center, Shreveport, LA, USA This review will summarize recent findings concerning the biological regulation of starvation as it relates to anorexia nervosa (AN), a serious eating disorder that mainly affects female adolescents and young adults. AN is generally viewed as a psychosomatic disorder mediated by obsessive concerns about weight, perfectionism and an overwhelming desire to be thin. By contrast, the thesis that will be developed here is that, AN is primarily a metabolic disorder caused by defective regulation of the starvation response, which leads to ambivalence towards food, decreased food consumption and characteristic psychopathology. We will trace the starvation response from yeast to man and describe the central role of insulin (and insulin-like growth factor-1 (IGF-1))/Akt/ F-box transcription factor (FOXO) signaling in this response. Akt is a serine/threonine kinase downstream of the insulin and IGF-1 receptors, whereas FOXO refers to the subfamily of Forkhead box O transcription factors, which are regulated by Akt. We will also discuss how initial bouts of caloric restriction may alter the production of neurotransmitters that regulate appetite and food-seeking behavior and thus, set in motion a vicious cycle. -
Survival of Starving Yeast Is Correlated with Oxidative Stress Response And
Survival of starving yeast is correlated with oxidative PNAS PLUS stress response and nonrespiratory mitochondrial function Allegra A. Pettia,b, Christopher A. Crutchfielda,c, Joshua D. Rabinowitza,c, and David Botsteina,b,1 aLewis-Sigler Institute for Integrative Genomics and Departments of bMolecular Biology and cChemistry, Princeton University, Princeton, NJ 08544 Edited by Jasper Rine, University of California, Berkeley, CA, and approved June 8, 2011 (received for review January 31, 2011) Survival of yeast during starvation has been shown to depend on tions for other areas of biology, because connections among the the nature of the missing nutrient(s). In general, starvation for same processes that are influenced by nutrient starvation have “natural” nutrients such as sources of carbon, phosphate, nitro- been documented in cancer, aging, and the yeast metabolic cycle. gen, or sulfate results in low death rates, whereas starvation for As a first step toward understanding general determinants of amino acids or other metabolites in auxotrophic mutants results in starvation phenotype, we sought to identify transcriptional cor- rapid loss of viability. Here we characterized phenotype, gene ex- relates of “successful” or “survivable” starvation—that is, starva- pression, and metabolite abundance during starvation for methi- tion that leads to concerted cell cycle arrest, glucose conservation, onine. Some methionine auxotrophs (those with blocks in the and, most importantly, survival. To this end, we compared the biosynthetic pathway) respond to methionine starvation like yeast physiology and gene expression of S. cerevisiae in response to starving for natural nutrients such as phosphate or sulfate: they starvation for a variety of previously characterized nutrients, and undergo a uniform cell cycle arrest, conserve glucose, and survive. -
Amino Acid Catabolism: Urea Cycle the Urea Bi-Cycle Two Issues
BI/CH 422/622 OUTLINE: OUTLINE: Protein Degradation (Catabolism) Digestion Amino-Acid Degradation Inside of cells Urea Cycle – dealing with the nitrogen Protein turnover Ubiquitin Feeding the Urea Cycle Activation-E1 Glucose-Alanine Cycle Conjugation-E2 Free Ammonia Ligation-E3 Proteosome Glutamine Amino-Acid Degradation Glutamate dehydrogenase Ammonia Overall energetics free Dealing with the carbon transamination-mechanism to know Seven Families Urea Cycle – dealing with the nitrogen 1. ADENQ 5 Steps 2. RPH Carbamoyl-phosphate synthetase oxidase Ornithine transcarbamylase one-carbon metabolism Arginino-succinate synthetase THF Arginino-succinase SAM Arginase 3. GSC Energetics PLP uses Urea Bi-cycle 4. MT – one carbon metabolism 5. FY – oxidases Amino Acid Catabolism: Urea Cycle The Urea Bi-Cycle Two issues: 1) What to do with the fumarate? 2) What are the sources of the free ammonia? a-ketoglutarate a-amino acid Aspartate transaminase transaminase a-keto acid Glutamate 1 Amino Acid Catabolism: Urea Cycle The Glucose-Alanine Cycle • Vigorously working muscles operate nearly anaerobically and rely on glycolysis for energy. a-Keto acids • Glycolysis yields pyruvate. – If not eliminated (converted to acetyl- CoA), lactic acid will build up. • If amino acids have become a fuel source, this lactate is converted back to pyruvate, then converted to alanine for transport into the liver. Excess Glutamate is Metabolized in the Mitochondria of Hepatocytes Amino Acid Catabolism: Urea Cycle Excess glutamine is processed in the intestines, kidneys, and liver. (deaminating) (N,Q,H,S,T,G,M,W) OAA à Asp Glutamine Synthetase This costs another ATP, bringing it closer to 5 (N,Q,H,S,T,G,M,W) 29 N 2 Amino Acid Catabolism: Urea Cycle Excess glutamine is processed in the intestines, kidneys, and liver.