Chidamide, Decitabine, Cytarabine, Aclarubicin, and Granulocyte Colony
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Epigenetics in Clinical Practice: the Examples of Azacitidine and Decitabine in Myelodysplasia and Acute Myeloid Leukemia
Leukemia (2013) 27, 1803–1812 & 2013 Macmillan Publishers Limited All rights reserved 0887-6924/13 www.nature.com/leu SPOTLIGHT REVIEW Epigenetics in clinical practice: the examples of azacitidine and decitabine in myelodysplasia and acute myeloid leukemia EH Estey Randomized trials have clearly demonstrated that the hypomethylating agents azacitidine and decitabine are more effective than ‘best supportive care’(BSC) in reducing transfusion frequency in ‘low-risk’ myelodysplasia (MDS) and in prolonging survival compared with BSC or low-dose ara-C in ‘high-risk’ MDS or acute myeloid leukemia (AML) with 21–30% blasts. They also appear equivalent to conventional induction chemotherapy in AML with 420% blasts and as conditioning regimens before allogeneic transplant (hematopoietic cell transplant, HCT) in MDS. Although azacitidine or decitabine are thus the standard to which newer therapies should be compared, here we discuss whether the improvement they afford in overall survival is sufficient to warrant a designation as a standard in treating individual patients. We also discuss pre- and post-treatment covariates, including assays of methylation to predict response, different schedules of administration, combinations with other active agents and use in settings other than active disease, in particular post HCT. We note that rational development of this class of drugs awaits delineation of how much of their undoubted effect in fact results from hypomethylation and reactivation of gene expression. Leukemia (2013) 27, 1803–1812; doi:10.1038/leu.2013.173 -
(DAC) Followed by Clofarabine, Idarubicin, and Cytarabine (CIA) in Acute Leukemia 2012-1064
2012-1064 September 02, 2014 Page 1 Protocol Page Phase I/II Study of Decitabine (DAC) followed by Clofarabine, Idarubicin, and Cytarabine (CIA) in Acute Leukemia 2012-1064 Core Protocol Information Short Title Decitabine followed by Clofarabine, Idarubicin, and Cytarabine in Acute Leukemia Study Chair: Nitin Jain Additional Contact: Allison Pike Jeannice Y. Theriot Leukemia Protocol Review Group Department: Leukemia Phone: 713-745-6080 Unit: 428 Full Title: Phase I/II Study of Decitabine (DAC) followed by Clofarabine, Idarubicin, and Cytarabine (CIA) in Acute Leukemia Protocol Type: Standard Protocol Protocol Phase: Phase I/Phase II Version Status: Terminated 01/12/2018 Version: 12 Submitted by: Jeannice Y. Theriot--4/26/2017 2:13:38 PM OPR Action: Accepted by: Melinda E. Gordon -- 5/1/2017 7:55:15 AM Which Committee will review this protocol? The Clinical Research Committee - (CRC) 2012-1064 September 02, 2014 Page 2 Protocol Body Phase I/II Study of Decitabine (DAC) followed by Clofarabine, Idarubicin, and Cytarabine (CIA) in Acute Leukemia 1. OBJECTIVES Phase I Primary: To determine the maximal tolerated dose (MTD) of clofarabine to be used in portion II of the study Phase II Primary: To determine the response rate of the DAC-CIA regimen Secondary: A) To determine the toxicity of the combination regimen B) To determine the disease-free survival (DFS) and overall survival (OS) rates 2. RATIONALE 2.1 Acute Myelogenous Leukemia Acute myelogenous leukemia (AML) is the most common acute leukemia in adults. It is estimated that 13,780 men and women will be diagnosed with and 10,200 men and women will die of acute myeloid leukemia in the year 2012.1 AML is a disease with a poor prognosis with a 5-year survival of only around 30%.2,3 Certain subgroups of AML have a particularly worse Page 1 of 34 outcome such as patients with relapsed and/or refractory AML and AML arising from antecedent myelodysplastic syndrome (MDS) or myeloproliferative neoplasms (MPNs). -
Azacytidine Sensitizes Acute Myeloid Leukemia Cells to Arsenic Trioxide By
Chau et al. Journal of Hematology & Oncology (2015) 8:46 DOI 10.1186/s13045-015-0143-3 JOURNAL OF HEMATOLOGY & ONCOLOGY RESEARCH ARTICLE Open Access Azacytidine sensitizes acute myeloid leukemia cells to arsenic trioxide by up-regulating the arsenic transporter aquaglyceroporin 9 David Chau1†, Karen Ng1†, Thomas Sau-Yan Chan1, Yuen-Yee Cheng1,3, Bonnie Fong2, Sidney Tam2, Yok-Lam Kwong1 and Eric Tse1* Abstract Background: The therapeutic efficacy of arsenic trioxide (As2O3) in acute myeloid leukemia (AML) is modest, which is partly related to its limited intracellular uptake into the leukemic cells. As2O3 enters cells via the transmembrane protein aquaglyceroporin 9 (AQP9). Azacytidine, a demethylating agent that is approved for the treatment of AML, has been shown to have synergistic effect with As2O3. We tested the hypothesis that azacytidine might up-regulate AQP9 and enhances As2O3-mediated cytotoxicity in AML. Methods: Arsenic-induced cytotoxicity, the expression of AQP9, and the intracellular uptake of As2O3 were determined in AML cell lines and primary AML cells with or without azacytidine pre-treatment. The mechanism of AQP9 up-regulation was then investigated by examining the expression of transcription factors for AQP9 gene and the methylation status of their gene promoters. Results: As2O3-induced cytotoxicity in AML cell lines was significantly enhanced after azacytidine pre-treatment as a result of AQP9 up-regulation, leading to increased arsenic uptake and hence intracellular concentration. Blocking AQP9-mediated As2O3 uptake with mercury chloride abrogated the sensitization effect of azacytidine. AQP9 promoter does not contain CpG islands. Instead, azacytidine pre-treatment led to increased expression of HNF1A, a transcription activator of AQP9, through demethylation of HNF1A promoter. -
Decitabine Plus CLAG Chemotherapy As a Bridge to Haploidentical
Jin et al. BMC Cancer (2019) 19:242 https://doi.org/10.1186/s12885-019-5464-0 CASEREPORT Open Access Decitabine plus CLAG chemotherapy as a bridge to haploidentical transplantation in the setting of acute myeloid leukemia relapse after HLA-matched sibling transplantation: a case report Mengqi Jin, Yongxian Hu, Wenjun Wu, Yi Luo, Yamin Tan, Jian Yu, Aiyun Jin, Luxin Yang, He Huang* and Guoqing Wei* Abstract Background: Patients with relapsed/refractory acute myeloid leukemia after hematopoietic stem cell transplantation (HSCT) have a poor prognosis, with a 2-year survival rate of 14%. The optimal treatment for these patients remains unclear. To treat these patients, we designed a new salvage regimen consisting of decitabine, cladribine, cytarabine, and granulocyte-stimulating factor (D-CLAG). Case presentation: Here, we describe a case of acute monocytic leukemia with a complex karyotype in a 38-year-old female patient who relapsed after her first HSCT, which was performed using a matched sibling donor. The patient did not respond to standard induction chemotherapy and subsequently achieved complete remission with the D-CLAG regimen. No severe hematological or extramedullary toxicity was observed. Subsequently, the patient received a second D-CLAG regimen as a bridge therapy and directly underwent haploidentical related HSCT. Following HSCT, the marrow showed complete hematologic and cytogenetic remission. Currently, 1 year after transplantation, the patient’s general condition remains good. Conclusions: This case suggests that the D-CLAG regimen can be an option for reinduction in relapsed refractory AML patients as a bridge to transplantation. Nevertheless, further research will be required in the future as this report describes only a single case. -
Comparison Between 5-Day Decitabine and 7-Day Azacitidine For
www.nature.com/scientificreports OPEN Comparison between 5-day decitabine and 7-day azacitidine for lower-risk myelodysplastic syndromes with poor prognostic features: a retrospective multicentre cohort study Byung-Hyun Lee 1, Ka-Won Kang 1, Min Ji Jeon2, Eun Sang Yu2, Dae Sik Kim2, Hojoon Choi 3, Se Ryeon Lee3, Hwa Jung Sung3, Byung Soo Kim1, Chul Won Choi2* & Yong Park1* Numerous studies have analysed the clinical efcacies of hypomethylating agents (HMAs) in patients with myelodysplastic syndromes (MDS). However, reports that compare the two HMAs, decitabine and azacitidine, in patients with lower-risk (low and intermediate-1) MDS are limited. We compared 5-day decitabine and 7-day azacitidine regimens in terms of treatment responses, survival outcomes, and adverse events in patients with lower-risk MDS with poor prognostic features. The overall response rates (ORRs) were 67.2% and 44.0% in the patients treated with decitabine and azacitidine, respectively (P = 0.014). While the median progression-free survival (PFS) was signifcantly better in the patients treated with decitabine than in those treated with azacitidine (P = 0.019), no signifcant diferences in event-free and overall survival rates were observed between the two groups. Multivariate analysis revealed that compared with azacitidine treatment, decitabine treatment is signifcantly associated with a higher ORR (P = 0.026) and longer PFS (P = 0.037). No signifcant diferences were observed in the incidence of grade 3 or higher haematologic adverse events in response to the two HMAs. In conclusion, in lower-risk MDS, especially with poor prognostic features, ORR and PFS were signifcantly better with 5-day decitabine treatment than with 7-day azacitidine treatment, with comparable safety. -
A Phase II Study of Omacetaxine (OM) in Patients with Intermediate-1 and Higher Risk Myelodysplastic Syndrome (MDS) Post Hypomethylating Agent (HMA) Failure 2013-0870
Protocol Page A Phase II Study of Omacetaxine (OM) in Patients with Intermediate-1 and Higher Risk Myelodysplastic Syndrome (MDS) post Hypomethylating Agent (HMA) Failure 2013-0870 Core Protocol Information Short Title Omacetaxine in Patients with Intermediate-1 and Higher Risk MDS post HMA Failure Study Chair: Elias Jabbour Additional Contact: Jhinelle L. Graham Vicky H. Zoeller Leukemia Protocol Review Group Additional Memo Recipients: Recipients List OPR Recipients (for OPR use only) None Study Staff Recipients None Department: Leukemia Phone: 713-792-4764 Unit: 0428 Full Title: A Phase II Study of Omacetaxine (OM) in Patients with Intermediate-1 and Higher Risk Myelodysplastic Syndrome (MDS) post Hypomethylating Agent (HMA) Failure Protocol Type: Standard Protocol Protocol Phase: Phase II Version Status: Activated -- Closed to new patient entry as of 08/05/2018 Version: 08 Document Status: Saved as "Final" Submitted by: Vicky H. Zoeller--9/11/2017 12:24:33 PM OPR Action: Accepted by: Margaret Okoloise -- 9/14/2017 12:09:50 PM Which Committee will review this protocol? The Clinical Research Committee - (CRC) Protocol Body 2013-0870 March 6, 2017 1 A Phase II Study of Omacetaxine (OM) in Patients with Intermediate-1 and Higher Risk Myelodysplastic Syndrome (MDS) post Hypomethylating Agent (HMA) Failure 2013-0870 March 6, 2017 2 Table of Contents 1.0 Objectives .................................................................................................. 3 2.0 Background .............................................................................................. -
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Qin et al. Clinical Epigenetics (2015) 7:97 DOI 10.1186/s13148-015-0131-z RESEARCH Open Access Epigenetic synergy between decitabine and platinum derivatives Taichun Qin1†, Jiali Si1†, Noël J-M Raynal1,4, Xiaodan Wang3, Vazganush Gharibyan1, Saira Ahmed1, Xin Hu1, Chunlei Jin1, Yue Lu1,2, Jingmin Shu1, Marcos RH Estecio1,2, Jaroslav Jelinek1,4 and Jean-Pierre J. Issa1,4* Abstract Background: Aberrant epigenetic silencing of tumor suppressor genes has been recognized as a driving force in cancer. Epigenetic drugs such as the DNA methylation inhibitor decitabine reactivate genes and are effective in myeloid leukemia, but resistance often develops and efficacy in solid tumors is limited. To improve their clinical efficacy, we searched among approved anti-cancer drugs for an epigenetic synergistic combination with decitabine. Results: We used the YB5 cell line, a clonal derivative of the SW48 colon cancer cell line that contains a single copy of a hypermethylated cytomegalovirus (CMV) promoter driving green fluorescent protein (GFP) to screen for drug-induced gene reactivation and synergy with decitabine. None of the 16 anti-cancer drugs tested had effects on their own. However, in combination with decitabine, platinum compounds showed striking synergy in activating GFP. This was dose dependent, observed both in concurrent and sequential combinations, and also seen with other alkylating agents. Clinically achievable concentrations of carboplatin at (25 μM) and decitabine reactivated GFP in 28 % of the YB5 cells as compared to 15 % with decitabine alone. Epigenetic synergy was also seen at endogenously hypermethylated tumor suppressor genes such as MLH1 and PDLIM4. Genome- wide studies showed that reactivation of hypermethylated genes by the combination was significantly better than that induced by decitabine alone or carboplatin alone. -
Sorafenib and Omacetaxine Mepesuccinate As a Safe and Effective Treatment for Acute Myeloid Leukemia Carrying Internal Tandem Du
Original Article Sorafenib and Omacetaxine Mepesuccinate as a Safe and Effective Treatment for Acute Myeloid Leukemia Carrying Internal Tandem Duplication of Fms-Like Tyrosine Kinase 3 Chunxiao Zhang, MSc1; Stephen S. Y. Lam, MBBS, PhD1; Garret M. K. Leung, MBBS1; Sze-Pui Tsui, MSc2; Ning Yang, PhD1; Nelson K. L. Ng, PhD1; Ho-Wan Ip, MBBS2; Chun-Hang Au, PhD3; Tsun-Leung Chan, PhD3; Edmond S. K. Ma, MBBS3; Sze-Fai Yip, MBBS4; Harold K. K. Lee, MBChB5; June S. M. Lau, MBChB6; Tsan-Hei Luk, MBChB6; Wa Li, MBChB7; Yok-Lam Kwong, MD 1; and Anskar Y. H. Leung, MD, PhD 1 BACKGROUND: Omacetaxine mepesuccinate (OME) has antileukemic effects against acute myeloid leukemia (AML) carrying an internal tandem duplication of Fms-like tyrosine kinase 3 (FLT3-ITD). A phase 2 clinical trial was conducted to evaluate a combina- tion treatment of sorafenib and omacetaxine mepesuccinate (SOME). METHODS: Relapsed or refractory (R/R) or newly diagnosed patients were treated with sorafenib (200-400 mg twice daily) and OME (2 mg daily) for 7 (first course) or 5 days (second course on- ward) every 21 days until disease progression or allogeneic hematopoietic stem cell transplantation (HSCT). The primary endpoint was composite complete remission, which was defined as complete remission (CR) plus complete remission with incomplete hematologic recovery (CRi). Secondary endpoints were leukemia-free survival (LFS) and overall survival (OS). RESULTS: Thirty-nine R/R patients and 5 newly diagnosed patients were recruited. Among the R/R patients, 28 achieved CR or CRi. Two patients showed partial remission, and 9 patients did not respond. -
Clinical Implications of Epigenetics Research
Clinical Implications of Epigenetics Research Nita Ahuja MD FACS Associate Professor of Surgery, Oncology and Urology Vice Chair of Academic Affairs Chief: Section of GI Oncology & BME Services Epigenetics: Our Software August 1, 2014 2 What is Epigenetics? . Heritable changes in gene expression not due to changes in the DNA sequence . DNA methylation . Chromatin structure or histone code . Role in normal and pathological processes, such as aging, mental health, and cancer, among others. DNA Methylation changes in Neoplasia Normal 1 2 3 Cancer 1 2 3 Epigenetic changes in Neoplasia Normal 1 2 3 AcK9 AcK9 MeK9 MeK9 MeK4 MeK4 MeK27 MeK27 Cancer 1 2 3 MeK9 MeK9 MeK9 MeK9 MeK9 MeK27 MeK27 MeK27 MeK27 MeK27 ?? Epigenetic changes in Neoplasia HATs HDemethylases Normal 1 2 3 AcK9 AcK9 MeK9 MeK9 MeK4 MeK4 MeK27 Aging MeK27 Inflammation HDACs H MTases Cancer 1 2 3 MeK9 MeK9 MeK9 MeK9 MeK9 MeK27 MeK27 MeK27 MeK27 MeK27 ?? Ahuja et. al. Cancer Res. 1998 Issa et. al Cancer Res 2001 Cancer Epigenetics: ApplicationsProtein Repressor proteins RNA (MBD, HDAC) DNA Promoter Gene Cancer Marker for Prognostic Reversal of Gene Silencing Molecular Staging And Predictive Epigenetic Early Detection Biomarkers Therapy Colon Cancer Functional Methylome • Each colon cancer has ~150 to 450 DAC methylated genes/tumor TSA Yellow spots indicate genes from DKO cells with 2 fold changes and above. Green spots indicate experimentally verified genes. Red spots indicate those that did not verify. Blue spots indicate the location of the 11 guide genes used in this study. Schuebel -
Bronchial Biopsy Specimen As a Surrogate for DNA Methylation Analysis in Inoperable Lung Cancer
Um et al. Clinical Epigenetics (2017) 9:131 DOI 10.1186/s13148-017-0432-5 RESEARCH Open Access Bronchial biopsy specimen as a surrogate for DNA methylation analysis in inoperable lung cancer Sang-Won Um1†, Hong Kwan Kim2†, Yujin Kim3, Bo Bin Lee3, Dongho Kim3, Joungho Han4, Hojoong Kim1, Young Mog Shim2 and Duk-Hwan Kim3,5* Abstract Background: This study was aimed at understanding whether bronchial biopsy specimen can be used as a surrogate for DNA methylation analysis in surgically resected lung cancer. Methods: A genome-wide methylation was analyzed in 42 surgically resected tumor tissues, 136 bronchial washing, 12 sputum, and 8 bronchial biopsy specimens using the Infinium HumanMethylation450 BeadChip, and models for prediction of lung cancer were evaluated using TCGA lung cancer data. Results: Four thousand seven hundred and twenty-six CpGs (P < 1.0E-07) that were highly methylated in tumor tissues were identified from 42 lung cancer patients. Ten CpGs were selected for prediction of lung cancer. Genes including the 10 CpGs were classified into three categories: (i) transcription (HOXA9, SOX17, ZNF154, HOXD13); (ii) cell signaling (HBP1, SFRP1, VIPR2); and (iii) adhesion (PCDH17, ITGA5, CD34). Three logistic regression models based on the 10 CpGs classified 897 TCGA primary lung tissues with a sensitivity of 95.0~97.8% and a specificity of 97.4~98. 7%. However, the classification performance of the models was very poor in bronchial washing samples: the area under the curve (AUC) was equal to 0.72~0.78. The methylation levels of the 10 CpGs in bronchial biopsy were not significantly different from those in surgically resected tumor tissues (P > 0.05, Wilcoxon rank-sum test). -
Phase I Study of Epigenetic Priming With
Published OnlineFirst November 10, 2016; DOI: 10.1158/1078-0432.CCR-16-1896 Cancer Therapy: Clinical Clinical Cancer Research Phase I Study of Epigenetic Priming with Azacitidine Prior to Standard Neoadjuvant Chemotherapy for Patients with Resectable Gastric and Esophageal Adenocarcinoma: Evidence of Tumor Hypomethylation as an Indicator of Major Histopathologic Response Bryan J. Schneider1, Manish A. Shah1, Kelsey Klute1, Allyson Ocean1, Elizabeta Popa1, Nasser Altorki2, Michael Lieberman3, Andrew Schreiner4, Rhonda Yantiss4, Paul J. Christos5, Romae Palmer6, Daoqi You7, Agnes Viale7, Pouneh Kermani1, and Joseph M. Scandura1,8 Abstract Purpose: Epigenetic silencing of tumor suppressor genes (TSG) by digital droplet, bisulfite qPCR in tumor samples collected at is an acquired abnormality observed in cancer and is prototyp- baseline and at resection. ically linked to DNA methylation. We postulated that pretreat- Results: All subjects underwent complete resection of residual ment (priming) with 5-azacitidine would increase the efficacy of tumor (R0). Three of the 12 patients (25%) achieved a surgical chemotherapy by reactivating TSGs. This study was conducted to complete response and 5 had partial responses. The overall identify a tolerable dose of 5-azacitidine prior to EOX (epirubicin, response rate was 67%. The most common toxicities were gas- oxaliplatin, capecitabine) neoadjuvant chemotherapy in patients trointestinal and hematologic. Hypomethylation of biomarker with locally advanced esophageal/gastric adenocarcinoma genes was observed at all dose levels and trended with therapeutic (EGC). response. Experimental Design: Eligible patients had untreated, locally Conclusions: Neoadjuvant VEOX was well-tolerated with advanced, resectable EGC, ECOG 0–2, and adequate organ func- significant clinical and epigenetic responses, with preliminary tion. -
Decitabine, a DNA Methyltransferase Inhibitor, Reduces P-Glycoprotein
ANTICANCER RESEARCH 32: 4439-4444 (2012) Decitabine, a DNA Methyltransferase Inhibitor, Reduces P-Glycoprotein mRNA and Protein Expressions and Increases Drug Sensitivity in Drug-resistant MOLT4 and Jurkat Cell Lines KENJI ONDA, RIEKO SUZUKI, SACHIKO TANAKA, HIROKAZU OGA, KITARO OKA and TOSHIHIKO HIRANO Department of Clinical Pharmacology, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan Abstract. Multidrug resistance (MDR) is a major clinical There have been many studies on the effect of DNA de- obstacle in the treatment of several cancers including methylation agents on cancer cells and drug-resistant cells hematological malignancies and solid tumors. The ATP- (4-6). However, in order to explore the possibility of binding cassette transporter B1 (ABCB1) gene and its product, epigenetic modifiers in clinical settings, more research is P-glycoprotein (P-gp), is one molecule that is involved in drug required to characterize the association of the effect of DNA resistance. Here we report on the effect of decitabine (5-aza- de-methylation agents with the drug-resistant features of 2’-deoxycytidine), an inhibitor of DNA methyltransferase, on several types of cancer cell. In the current study, we ABCB1 mRNA and P-gp expressions in drug-resistant MOLT4 investigated the effect of decitabine treatment on the drug and Jurkat cells. We found that decitabine treatment reduced sensitivity of two drug-resistant hematopoietic cell lines, ABCB1 mRNA and P-gp expressions in MOLT4/daunorubicin- MOLT4/resistant to daunorubicin (DNR) and Jurkat/resistant resistant and Jurkat/doxorubicin-resistant cells. The decrease to doxorubicin (DOX), established in our laboratory by in the expression of ABCB1 mRNA and P-gp was accompanied culturing cells with stepwise concentrations of daunorubicine by increased sensitivity to anticancer drugs in both drug- and doxorubicine, respectively (7).