Computer Architecture: SIMD and Gpus (Part III) (And Briefly VLIW, DAE, Systolic Arrays)
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Parallel Patterns for Adaptive Data Stream Processing
Università degli Studi di Pisa Dipartimento di Informatica Dottorato di Ricerca in Informatica Ph.D. Thesis Parallel Patterns for Adaptive Data Stream Processing Tiziano De Matteis Supervisor Supervisor Marco Danelutto Marco Vanneschi Abstract In recent years our ability to produce information has been growing steadily, driven by an ever increasing computing power, communication rates, hardware and software sensors diffusion. is data is often available in the form of continuous streams and the ability to gather and analyze it to extract insights and detect patterns is a valu- able opportunity for many businesses and scientific applications. e topic of Data Stream Processing (DaSP) is a recent and highly active research area dealing with the processing of this streaming data. e development of DaSP applications poses several challenges, from efficient algorithms for the computation to programming and runtime systems to support their execution. In this thesis two main problems will be tackled: • need for high performance: high throughput and low latency are critical re- quirements for DaSP problems. Applications necessitate taking advantage of parallel hardware and distributed systems, such as multi/manycores or cluster of multicores, in an effective way; • dynamicity: due to their long running nature (24hr/7d), DaSP applications are affected by highly variable arrival rates and changes in their workload charac- teristics. Adaptivity is a fundamental feature in this context: applications must be able to autonomously scale the used resources to accommodate dynamic requirements and workload while maintaining the desired Quality of Service (QoS) in a cost-effective manner. In the current approaches to the development of DaSP applications are still miss- ing efficient exploitation of intra-operator parallelism as well as adaptations strategies with well known properties of stability, QoS assurance and cost awareness. -
CUDA by Example
CUDA by Example AN INTRODUCTION TO GENERAL-PURPOSE GPU PROGRAMMING JASON SaNDERS EDWARD KANDROT Upper Saddle River, NJ • Boston • Indianapolis • San Francisco New York • Toronto • Montreal • London • Munich • Paris • Madrid Capetown • Sydney • Tokyo • Singapore • Mexico City Sanders_book.indb 3 6/12/10 3:15:14 PM Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and the publisher was aware of a trademark claim, the designations have been printed with initial capital letters or in all capitals. The authors and publisher have taken care in the preparation of this book, but make no expressed or implied warranty of any kind and assume no responsibility for errors or omissions. No liability is assumed for incidental or consequential damages in connection with or arising out of the use of the information or programs contained herein. NVIDIA makes no warranty or representation that the techniques described herein are free from any Intellectual Property claims. The reader assumes all risk of any such claims based on his or her use of these techniques. The publisher offers excellent discounts on this book when ordered in quantity for bulk purchases or special sales, which may include electronic versions and/or custom covers and content particular to your business, training goals, marketing focus, and branding interests. For more information, please contact: U.S. Corporate and Government Sales (800) 382-3419 [email protected] For sales outside the United States, please contact: International Sales [email protected] Visit us on the Web: informit.com/aw Library of Congress Cataloging-in-Publication Data Sanders, Jason. -
Bitfusion Guide to CUDA Installation Bitfusion Guides Bitfusion: Bitfusion Guide to CUDA Installation
WHITE PAPER–OCTOBER 2019 Bitfusion Guide to CUDA Installation Bitfusion Guides Bitfusion: Bitfusion Guide to CUDA Installation Table of Contents Purpose 3 Introduction 3 Some Sources of Confusion 4 So Many Prerequisites 4 Installing the NVIDIA Repository 4 Installing the NVIDIA Driver 6 Installing NVIDIA CUDA 6 Installing cuDNN 7 Speed It Up! 8 Upgrading CUDA 9 WHITE PAPER | 2 Bitfusion: Bitfusion Guide to CUDA Installation Purpose Bitfusion FlexDirect provides a GPU virtualization solution. It allows you to use the GPUs, or even partial GPUs (e.g., half of a GPU, or a quarter, or one-third of a GPU), on different servers as if they were attached to your local machine, a machine on which you can now run a CUDA application even though it has no GPUs of its own. Since Bitfusion FlexDirect software and ML/AI (machine learning/artificial intelligence) applications require other CUDA libraries and drivers, this document describes how to install the prerequisite software for both Bitfusion FlexDirect and for various ML/AI applications. If you already have your CUDA drivers and libraries installed, you can skip ahead to the chapter on installing Bitfusion FlexDirect. This document gives instruction and examples for Ubuntu, Red Hat, and CentOS systems. Introduction Bitfusion’s software tool is called FlexDirect. FlexDirect easily installs with a single command, but installing the third-party prerequisite drivers and libraries, plus any application and its prerequisite software, can seem a Gordian Knot to users new to CUDA code and ML/AI applications. We will begin untangling the knot with a table of the components involved. -
A Middleware for Efficient Stream Processing in CUDA
Noname manuscript No. (will be inserted by the editor) A Middleware for E±cient Stream Processing in CUDA Shinta Nakagawa ¢ Fumihiko Ino ¢ Kenichi Hagihara Received: date / Accepted: date Abstract This paper presents a middleware capable of which are expressed as kernels. On the other hand, in- out-of-order execution of kernels and data transfers for put/output data is organized as streams, namely se- e±cient stream processing in the compute uni¯ed de- quences of similar data records. Input streams are then vice architecture (CUDA). Our middleware runs on the passed through the chain of kernels in a pipelined fash- CUDA-compatible graphics processing unit (GPU). Us- ion, producing output streams. One advantage of stream ing the middleware, application developers are allowed processing is that it can exploit the parallelism inherent to easily overlap kernel computation with data trans- in the pipeline. For example, the execution of the stages fer between the main memory and the video memory. can be overlapped with each other to exploit task par- To maximize the e±ciency of this overlap, our middle- allelism. Furthermore, di®erent stream elements can be ware performs out-of-order execution of commands such simultaneously processed to exploit data parallelism. as kernel invocations and data transfers. This run-time One of the stream architecture that bene¯t from capability can be used by just replacing the original the advantages mentioned above is the graphics pro- CUDA API calls with our API calls. We have applied cessing unit (GPU), originally designed for acceleration the middleware to a practical application to understand of graphics applications. -
2.5 Classification of Parallel Computers
52 // Architectures 2.5 Classification of Parallel Computers 2.5 Classification of Parallel Computers 2.5.1 Granularity In parallel computing, granularity means the amount of computation in relation to communication or synchronisation Periods of computation are typically separated from periods of communication by synchronization events. • fine level (same operations with different data) ◦ vector processors ◦ instruction level parallelism ◦ fine-grain parallelism: – Relatively small amounts of computational work are done between communication events – Low computation to communication ratio – Facilitates load balancing 53 // Architectures 2.5 Classification of Parallel Computers – Implies high communication overhead and less opportunity for per- formance enhancement – If granularity is too fine it is possible that the overhead required for communications and synchronization between tasks takes longer than the computation. • operation level (different operations simultaneously) • problem level (independent subtasks) ◦ coarse-grain parallelism: – Relatively large amounts of computational work are done between communication/synchronization events – High computation to communication ratio – Implies more opportunity for performance increase – Harder to load balance efficiently 54 // Architectures 2.5 Classification of Parallel Computers 2.5.2 Hardware: Pipelining (was used in supercomputers, e.g. Cray-1) In N elements in pipeline and for 8 element L clock cycles =) for calculation it would take L + N cycles; without pipeline L ∗ N cycles Example of good code for pipelineing: §doi =1 ,k ¤ z ( i ) =x ( i ) +y ( i ) end do ¦ 55 // Architectures 2.5 Classification of Parallel Computers Vector processors, fast vector operations (operations on arrays). Previous example good also for vector processor (vector addition) , but, e.g. recursion – hard to optimise for vector processors Example: IntelMMX – simple vector processor. -
AMD Accelerated Parallel Processing Opencl Programming Guide
AMD Accelerated Parallel Processing OpenCL Programming Guide November 2013 rev2.7 © 2013 Advanced Micro Devices, Inc. All rights reserved. AMD, the AMD Arrow logo, AMD Accelerated Parallel Processing, the AMD Accelerated Parallel Processing logo, ATI, the ATI logo, Radeon, FireStream, FirePro, Catalyst, and combinations thereof are trade- marks of Advanced Micro Devices, Inc. Microsoft, Visual Studio, Windows, and Windows Vista are registered trademarks of Microsoft Corporation in the U.S. and/or other jurisdic- tions. Other names are for informational purposes only and may be trademarks of their respective owners. OpenCL and the OpenCL logo are trademarks of Apple Inc. used by permission by Khronos. The contents of this document are provided in connection with Advanced Micro Devices, Inc. (“AMD”) products. AMD makes no representations or warranties with respect to the accuracy or completeness of the contents of this publication and reserves the right to make changes to specifications and product descriptions at any time without notice. The information contained herein may be of a preliminary or advance nature and is subject to change without notice. No license, whether express, implied, arising by estoppel or other- wise, to any intellectual property rights is granted by this publication. Except as set forth in AMD’s Standard Terms and Conditions of Sale, AMD assumes no liability whatsoever, and disclaims any express or implied warranty, relating to its products including, but not limited to, the implied warranty of merchantability, fitness for a particular purpose, or infringement of any intellectual property right. AMD’s products are not designed, intended, authorized or warranted for use as compo- nents in systems intended for surgical implant into the body, or in other applications intended to support or sustain life, or in any other application in which the failure of AMD’s product could create a situation where personal injury, death, or severe property or envi- ronmental damage may occur. -
Parallel Architectures and Algorithms for Large-Scale Nonlinear Programming
Parallel Architectures and Algorithms for Large-Scale Nonlinear Programming Carl D. Laird Associate Professor, School of Chemical Engineering, Purdue University Faculty Fellow, Mary Kay O’Connor Process Safety Center Laird Research Group: http://allthingsoptimal.com Landscape of Scientific Computing 10$ 1$ 50%/year 20%/year Clock&Rate&(GHz)& 0.1$ 0.01$ 1980$ 1985$ 1990$ 1995$ 2000$ 2005$ 2010$ Year& [Steven Edwards, Columbia University] 2 Landscape of Scientific Computing Clock-rate, the source of past speed improvements have stagnated. Hardware manufacturers are shifting their focus to energy efficiency (mobile, large10" data centers) and parallel architectures. 12" 10" 1" 8" 6" #"of"Cores" Clock"Rate"(GHz)" 0.1" 4" 2" 0.01" 0" 1980" 1985" 1990" 1995" 2000" 2005" 2010" Year" 3 “… over a 15-year span… [problem] calculations improved by a factor of 43 million. [A] factor of roughly 1,000 was attributable to faster processor speeds, … [yet] a factor of 43,000 was due to improvements in the efficiency of software algorithms.” - attributed to Martin Grotschel [Steve Lohr, “Software Progress Beats Moore’s Law”, New York Times, March 7, 2011] Landscape of Computing 5 Landscape of Computing High-Performance Parallel Architectures Multi-core, Grid, HPC clusters, Specialized Architectures (GPU) 6 Landscape of Computing High-Performance Parallel Architectures Multi-core, Grid, HPC clusters, Specialized Architectures (GPU) 7 Landscape of Computing data VM iOS and Android device sales High-Performance have surpassed PC Parallel Architectures iPhone performance -
SIMD Extensions
SIMD Extensions PDF generated using the open source mwlib toolkit. See http://code.pediapress.com/ for more information. PDF generated at: Sat, 12 May 2012 17:14:46 UTC Contents Articles SIMD 1 MMX (instruction set) 6 3DNow! 8 Streaming SIMD Extensions 12 SSE2 16 SSE3 18 SSSE3 20 SSE4 22 SSE5 26 Advanced Vector Extensions 28 CVT16 instruction set 31 XOP instruction set 31 References Article Sources and Contributors 33 Image Sources, Licenses and Contributors 34 Article Licenses License 35 SIMD 1 SIMD Single instruction Multiple instruction Single data SISD MISD Multiple data SIMD MIMD Single instruction, multiple data (SIMD), is a class of parallel computers in Flynn's taxonomy. It describes computers with multiple processing elements that perform the same operation on multiple data simultaneously. Thus, such machines exploit data level parallelism. History The first use of SIMD instructions was in vector supercomputers of the early 1970s such as the CDC Star-100 and the Texas Instruments ASC, which could operate on a vector of data with a single instruction. Vector processing was especially popularized by Cray in the 1970s and 1980s. Vector-processing architectures are now considered separate from SIMD machines, based on the fact that vector machines processed the vectors one word at a time through pipelined processors (though still based on a single instruction), whereas modern SIMD machines process all elements of the vector simultaneously.[1] The first era of modern SIMD machines was characterized by massively parallel processing-style supercomputers such as the Thinking Machines CM-1 and CM-2. These machines had many limited-functionality processors that would work in parallel. -
Introduction to Multi-Threading and Vectorization Matti Kortelainen Larsoft Workshop 2019 25 June 2019 Outline
Introduction to multi-threading and vectorization Matti Kortelainen LArSoft Workshop 2019 25 June 2019 Outline Broad introductory overview: • Why multithread? • What is a thread? • Some threading models – std::thread – OpenMP (fork-join) – Intel Threading Building Blocks (TBB) (tasks) • Race condition, critical region, mutual exclusion, deadlock • Vectorization (SIMD) 2 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading Image courtesy of K. Rupp 3 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading • One process on a node: speedups from parallelizing parts of the programs – Any problem can get speedup if the threads can cooperate on • same core (sharing L1 cache) • L2 cache (may be shared among small number of cores) • Fully loaded node: save memory and other resources – Threads can share objects -> N threads can use significantly less memory than N processes • If smallest chunk of data is so big that only one fits in memory at a time, is there any other option? 4 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization What is a (software) thread? (in POSIX/Linux) • “Smallest sequence of programmed instructions that can be managed independently by a scheduler” [Wikipedia] • A thread has its own – Program counter – Registers – Stack – Thread-local memory (better to avoid in general) • Threads of a process share everything else, e.g. – Program code, constants – Heap memory – Network connections – File handles -
(GPU) Computing
Graphics Processing Unit (GPU) computing This section describes the graphics processing unit (GPU) computing feature of OptiSystem. Note: The GPU computing feature is only configurable with OptiSystem Version 11 (or higher) What is GPU computing? GPU computing or GPGPU takes advantage of a computer’s grahics processing card to augment the speed of general purpose scientific and engineering computing tasks. Compute Unified Device Architecture (CUDA) implementation for OptiSystem NVIDIA revolutionized the GPGPU and accelerated computing when it introduced a new parallel computing architecture: Compute Unified Device Architecture (CUDA). CUDA is both a hardware and software architecture for issuing and managing computations within the GPU, thus allowing it to operate as a generic data-parallel computing device. CUDA allows the programmer to take advantage of the parallel computing power of an NVIDIA graphics card to perform general purpose computations. OptiSystem CUDA implementation The OptiSystem model for GPU computing involves using a central processing unit (CPU) and GPU together in a heterogeneous co-processing computing model. The sequential part of the application runs on the CPU and the computationally-intensive part is accelerated by the GPU. In the OptiSystem GPU programming model, the application has been modified to map the compute-intensive kernels to the GPU. The remainder of the application remains within the CPU. CUDA parallel computing architecture The NVIDIA CUDA parallel computing architecture is enabled on GeForce®, Quadro®, and Tesla™ products. Whereas GeForce and Quadro are designed for consumer graphics and professional visualization respectively, the Tesla product family is designed ground-up for parallel computing and offers exclusive computing 3 GRAPHICS PROCESSING UNIT (GPU) COMPUTING features, and is the recommended choice for the OptiSystem GPU. -
Computer Hardware Architecture Lecture 4
Computer Hardware Architecture Lecture 4 Manfred Liebmann Technische Universit¨atM¨unchen Chair of Optimal Control Center for Mathematical Sciences, M17 [email protected] November 10, 2015 Manfred Liebmann November 10, 2015 Reading List • Pacheco - An Introduction to Parallel Programming (Chapter 1 - 2) { Introduction to computer hardware architecture from the parallel programming angle • Hennessy-Patterson - Computer Architecture - A Quantitative Approach { Reference book for computer hardware architecture All books are available on the Moodle platform! Computer Hardware Architecture 1 Manfred Liebmann November 10, 2015 UMA Architecture Figure 1: A uniform memory access (UMA) multicore system Access times to main memory is the same for all cores in the system! Computer Hardware Architecture 2 Manfred Liebmann November 10, 2015 NUMA Architecture Figure 2: A nonuniform memory access (UMA) multicore system Access times to main memory differs form core to core depending on the proximity of the main memory. This architecture is often used in dual and quad socket servers, due to improved memory bandwidth. Computer Hardware Architecture 3 Manfred Liebmann November 10, 2015 Cache Coherence Figure 3: A shared memory system with two cores and two caches What happens if the same data element z1 is manipulated in two different caches? The hardware enforces cache coherence, i.e. consistency between the caches. Expensive! Computer Hardware Architecture 4 Manfred Liebmann November 10, 2015 False Sharing The cache coherence protocol works on the granularity of a cache line. If two threads manipulate different element within a single cache line, the cache coherency protocol is activated to ensure consistency, even if every thread is only manipulating its own data. -
CS650 Computer Architecture Lecture 10 Introduction to Multiprocessors
NJIT Computer Science Dept CS650 Computer Architecture CS650 Computer Architecture Lecture 10 Introduction to Multiprocessors and PC Clustering Andrew Sohn Computer Science Department New Jersey Institute of Technology Lecture 10: Intro to Multiprocessors/Clustering 1/15 12/7/2003 A. Sohn NJIT Computer Science Dept CS650 Computer Architecture Key Issues Run PhotoShop on 1 PC or N PCs Programmability • How to program a bunch of PCs viewed as a single logical machine. Performance Scalability - Speedup • Run PhotoShop on 1 PC (forget the specs of this PC) • Run PhotoShop on N PCs • Will it run faster on N PCs? Speedup = ? Lecture 10: Intro to Multiprocessors/Clustering 2/15 12/7/2003 A. Sohn NJIT Computer Science Dept CS650 Computer Architecture Types of Multiprocessors Key: Data and Instruction Single Instruction Single Data (SISD) • Intel processors, AMD processors Single Instruction Multiple Data (SIMD) • Array processor • Pentium MMX feature Multiple Instruction Single Data (MISD) • Systolic array • Special purpose machines Multiple Instruction Multiple Data (MIMD) • Typical multiprocessors (Sun, SGI, Cray,...) Single Program Multiple Data (SPMD) • Programming model Lecture 10: Intro to Multiprocessors/Clustering 3/15 12/7/2003 A. Sohn NJIT Computer Science Dept CS650 Computer Architecture Shared-Memory Multiprocessor Processor Prcessor Prcessor Interconnection network Main Memory Storage I/O Lecture 10: Intro to Multiprocessors/Clustering 4/15 12/7/2003 A. Sohn NJIT Computer Science Dept CS650 Computer Architecture Distributed-Memory Multiprocessor Processor Processor Processor IO/S MM IO/S MM IO/S MM Interconnection network IO/S MM IO/S MM IO/S MM Processor Processor Processor Lecture 10: Intro to Multiprocessors/Clustering 5/15 12/7/2003 A.