Monophyly of Bryozoa
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Associated Organisms Inhabiting the Calcareous Sponge Clathrina Lutea in La Parguera Natural
bioRxiv preprint doi: https://doi.org/10.1101/596429; this version posted April 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Associated organisms inhabiting the calcareous sponge Clathrina lutea in La Parguera Natural 2 Reserve, Puerto Rico 3 4 Jaaziel E. García-Hernández1,2*, Nicholas M. Hammerman2,3*, Juan J. Cruz-Motta2 & Nikolaos V. 5 Schizas2 6 * These authors contributed equally 7 1University of Puerto Rico at Mayagüez, Department of Biology, PO Box 9000, Mayagüez, PR 8 00681 9 2University of Puerto Rico at Mayagüez, Department of Marine Sciences, Marine Genomic 10 Biodiversity Laboratory, PO Box 9000, Mayagüez, PR 00681 11 3School of Biological Sciences, University of Queensland, Gehrmann Laboratories, Level 8, 12 Research Road, St Lucia, QLD 4072, Australia 13 14 15 Nikolaos V. Schizas, [email protected], FAX: 787-899-5500 16 17 Running Head: Infauna of the calcareous sponge Clathrina lutea 18 19 20 1 bioRxiv preprint doi: https://doi.org/10.1101/596429; this version posted April 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 21 ABSTRACT 22 Sponges provide an array of ecological services and benefits for Caribbean coral reefs. They 23 function as habitats for a bewildering variety of species, however limited attention has been paid 24 in the systematics and distribution of sponge-associated fauna in the class Calcarea or for that 25 matter of sponges in the Caribbean. -
End-Permian Mass Extinction in the Oceans: an Ancient Analog for the Twenty-First Century?
EA40CH05-Payne ARI 23 March 2012 10:24 End-Permian Mass Extinction in the Oceans: An Ancient Analog for the Twenty-First Century? Jonathan L. Payne1 and Matthew E. Clapham2 1Department of Geological and Environmental Sciences, Stanford University, Stanford, California 94305; email: [email protected] 2Department of Earth and Planetary Sciences, University of California, Santa Cruz, California 95064; email: [email protected] Annu. Rev. Earth Planet. Sci. 2012. 40:89–111 Keywords First published online as a Review in Advance on ocean acidification, evolution, isotope geochemistry, volcanism, January 3, 2012 biodiversity The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The greatest loss of biodiversity in the history of animal life occurred at the 10.1146/annurev-earth-042711-105329 end of the Permian Period (∼252 million years ago). This biotic catastro- Annu. Rev. Earth Planet. Sci. 2012.40:89-111. Downloaded from www.annualreviews.org Copyright c 2012 by Annual Reviews. phe coincided with an interval of widespread ocean anoxia and the eruption All rights reserved of one of Earth’s largest continental flood basalt provinces, the Siberian by Stanford University - Main Campus Robert Crown Law Library on 06/04/12. For personal use only. 0084-6597/12/0530-0089$20.00 Traps. Volatile release from basaltic magma and sedimentary strata dur- ing emplacement of the Siberian Traps can account for most end-Permian paleontological and geochemical observations. Climate change and, per- haps, destruction of the ozone layer can explain extinctions on land, whereas changes in ocean oxygen levels, CO2, pH, and temperature can account for extinction selectivity across marine animals. -
Development, Organization, and Remodeling of Phoronid Muscles from Embryo to Metamorphosis (Lophotrochozoa: Phoronida) Elena N Temereva1,3* and Eugeni B Tsitrin2
Temereva and Tsitrin BMC Developmental Biology 2013, 13:14 http://www.biomedcentral.com/1471-213X/13/14 RESEARCH ARTICLE Open Access Development, organization, and remodeling of phoronid muscles from embryo to metamorphosis (Lophotrochozoa: Phoronida) Elena N Temereva1,3* and Eugeni B Tsitrin2 Abstract Background: The phoronid larva, which is called the actinotrocha, is one of the most remarkable planktotrophic larval types among marine invertebrates. Actinotrochs live in plankton for relatively long periods and undergo catastrophic metamorphosis, in which some parts of the larval body are consumed by the juvenile. The development and organization of the muscular system has never been described in detail for actinotrochs and for other stages in the phoronid life cycle. Results: In Phoronopsis harmeri, muscular elements of the preoral lobe and the collar originate in the mid-gastrula stage from mesodermal cells, which have immigrated from the anterior wall of the archenteron. Muscles of the trunk originate from posterior mesoderm together with the trunk coelom. The organization of the muscular system in phoronid larvae of different species is very complex and consists of 14 groups of muscles. The telotroch constrictor, which holds the telotroch in the larval body during metamorphosis, is described for the first time. This unusual muscle is formed by apical myofilaments of the epidermal cells. Most larval muscles are formed by cells with cross-striated organization of myofibrils. During metamorphosis, most elements of the larval muscular system degenerate, but some of them remain and are integrated into the juvenile musculature. Conclusion: Early steps of phoronid myogenesis reflect the peculiarities of the actinotroch larva: the muscle of the preoral lobe is the first muscle to appear, and it is important for food capture. -
Chemical Defense of a Soft-Sediment Dwelling Phoronid Against Local Epibenthic Predators
Vol. 374: 101–111, 2009 MARINE ECOLOGY PROGRESS SERIES Published January 13 doi: 10.3354/meps07767 Mar Ecol Prog Ser Chemical defense of a soft-sediment dwelling phoronid against local epibenthic predators Amy A. Larson1, 3,*, John J. Stachowicz2 1Bodega Marine Laboratory, PO Box 247, Bodega Bay, California 94923-0247, USA 2Section of Evolution and Ecology, University of California, Davis, California 95616, USA 3Present address: Aquatic Bioinvasions Research and Policy Institute, Environmental Sciences and Resources, Portland State University, PO Box 751 (ESR), Portland, Oregon 97207, USA ABSTRACT: Chemical defenses are thought to be infrequent in most soft-sediment systems because organisms that live beneath the sediment rely more on avoidance or escape to reduce predation. However, selection for chemical deterrence might be strong among soft-sediment organisms that are sessile and expose at least part of their body above the surface. The phoronid Phoronopsis viridis is a tube-dwelling lophophorate that reaches high densities (26 500 m–2) on tidal flats in small bays in California, USA. We found that P. viridis is broadly unpalatable, and that this unpalatability is most apparent in the anterior section, including the lophophore, which is exposed to epibenthic predators as phoronids feed. Experimental removal of lophophores in the field increased the palatability of phoronids to predators; deterrence was regained after 12 d, when the lophophores had regenerated. Extracts of P. viridis deterred both fish and crab predators. Bioassay-guided fractionation suggested that the active compounds are relatively non-polar and volatile. Although we were unable to isolate the deterrent metabolite(s), we were able to rule out brominated phenols, a group of compounds commonly reported from infaunal organisms. -
The Biology of Seashores - Image Bank Guide All Images and Text ©2006 Biomedia ASSOCIATES
The Biology of Seashores - Image Bank Guide All Images And Text ©2006 BioMEDIA ASSOCIATES Shore Types Low tide, sandy beach, clam diggers. Knowing the Low tide, rocky shore, sandstone shelves ,The time and extent of low tides is important for people amount of beach exposed at low tide depends both on who collect intertidal organisms for food. the level the tide will reach, and on the gradient of the beach. Low tide, Salt Point, CA, mixed sandstone and hard Low tide, granite boulders, The geology of intertidal rock boulders. A rocky beach at low tide. Rocks in the areas varies widely. Here, vertical faces of exposure background are about 15 ft. (4 meters) high. are mixed with gentle slopes, providing much variation in rocky intertidal habitat. Split frame, showing low tide and high tide from same view, Salt Point, California. Identical views Low tide, muddy bay, Bodega Bay, California. of a rocky intertidal area at a moderate low tide (left) Bays protected from winds, currents, and waves tend and moderate high tide (right). Tidal variation between to be shallow and muddy as sediments from rivers these two times was about 9 feet (2.7 m). accumulate in the basin. The receding tide leaves mudflats. High tide, Salt Point, mixed sandstone and hard rock boulders. Same beach as previous two slides, Low tide, muddy bay. In some bays, low tides expose note the absence of exposed algae on the rocks. vast areas of mudflats. The sea may recede several kilometers from the shoreline of high tide Tides Low tide, sandy beach. -
Unesco-Eolss Sample Chapters
FISHERIES AND AQUACULTURE - Myxozoan Biology And Ecology - Dr. Ariadna Sitjà-Bobadilla and Oswaldo Palenzuela MYXOZOAN BIOLOGY AND ECOLOGY Ariadna Sitjà-Bobadilla and Oswaldo Palenzuela Instituto de Acuicultura Torre de la Sal, Consejo Superior de Investigaciones Científicas (IATS-CSIC), Castellón, Spain Keywords: Myxozoa, Myxosporea, Actinosporea, Malacosporea, Metazoa, Parasites, Fish Pathology, Invertebrates, Taxonomy, Phylogeny, Cell Biology, Life Cycle Contents 1. Introduction 2. Phylogeny 3. Morphology and Taxonomy 3.1. Spore Morphology 3.2. Taxonomy 4. Life Cycle 4.1. Life Cycle of Myxosporea 4.2. Life Cycle of Malacosporea 5. Cell Biology and Development 6. Ecological Aspects 6.1. Hosts 6.2. Habitats 6.3. Environmental Cues 7. Pathology 7.1. General Remarks 7.2. Pathogenic Effects of Myxozoans 7.2.1. Effects on Invertebrates 7.2.2. Effects on Fish 7.2.3. Effects on non-fish Vertebrates Acknowledgements Glossary Bibliography Biographical Sketches Summary UNESCO-EOLSS The phylum Myxozoa is a group of microscopic metazoans with an obligate endoparasitic lifestyle.SAMPLE Traditionally regarded CHAPTERS as protists, research findings during the last decades have dramatically changed our knowledge of these organisms, nowadays understood as examples of early metazoan evolution and extreme adaptation to parasitic lifestyles. Two distinct classes of myxozoans, Myxosporea and Malacosporea, are characterized by profound differences in rDNA evolution and well supported by differential biological and developmental features. This notwithstanding, most of the existing Myxosporea subtaxa require revision in the light of molecular phylogeny data. Most known myxozoans exhibit diheteroxenous cycles, alternating between a vertebrate host (mostly fish but also other poikilothermic vertebrates, and exceptionally birds and mammals) and an invertebrate (mainly annelids and bryozoans but possibly other ©Encyclopedia of Life Support Systems (EOLSS) FISHERIES AND AQUACULTURE - Myxozoan Biology And Ecology - Dr. -
Hox Gene Expression During Development of the Phoronid Phoronopsis Harmeri Ludwik Gąsiorowski1,2 and Andreas Hejnol1,2*
Gąsiorowski and Hejnol EvoDevo (2020) 11:2 https://doi.org/10.1186/s13227-020-0148-z EvoDevo RESEARCH Open Access Hox gene expression during development of the phoronid Phoronopsis harmeri Ludwik Gąsiorowski1,2 and Andreas Hejnol1,2* Abstract Background: Phoronida is a small group of marine worm-like suspension feeders, which together with brachiopods and bryozoans form the clade Lophophorata. Although their development is well studied on the morphological level, data regarding gene expression during this process are scarce and restricted to the analysis of relatively few transcrip- tion factors. Here, we present a description of the expression patterns of Hox genes during the embryonic and larval development of the phoronid Phoronopsis harmeri. Results: We identifed sequences of eight Hox genes in the transcriptome of Ph. harmeri and determined their expression pattern during embryonic and larval development using whole mount in situ hybridization. We found that none of the Hox genes is expressed during embryonic development. Instead their expression is initiated in the later developmental stages, when the larval body is already formed. In the investigated initial larval stages the Hox genes are expressed in the non-collinear manner in the posterior body of the larvae: in the telotroch and the structures that represent rudiments of the adult worm. Additionally, we found that certain head-specifc transcription factors are expressed in the oral hood, apical organ, preoral coelom, digestive system and developing larval tentacles, anterior to the Hox-expressing territories. Conclusions: The lack of Hox gene expression during early development of Ph. harmeri indicates that the larval body develops without positional information from the Hox patterning system. -
Genomic Adaptations to Chemosymbiosis in the Deep-Sea Seep-Dwelling Tubeworm Lamellibrachia Luymesi Yuanning Li1,2* , Michael G
Li et al. BMC Biology (2019) 17:91 https://doi.org/10.1186/s12915-019-0713-x RESEARCH ARTICLE Open Access Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi Yuanning Li1,2* , Michael G. Tassia1, Damien S. Waits1, Viktoria E. Bogantes1, Kyle T. David1 and Kenneth M. Halanych1* Abstract Background: Symbiotic relationships between microbes and their hosts are widespread and diverse, often providing protection or nutrients, and may be either obligate or facultative. However, the genetic mechanisms allowing organisms to maintain host-symbiont associations at the molecular level are still mostly unknown, and in the case of bacterial-animal associations, most genetic studies have focused on adaptations and mechanisms of the bacterial partner. The gutless tubeworms (Siboglinidae, Annelida) are obligate hosts of chemoautotrophic endosymbionts (except for Osedax which houses heterotrophic Oceanospirillales), which rely on the sulfide- oxidizing symbionts for nutrition and growth. Whereas several siboglinid endosymbiont genomes have been characterized, genomes of hosts and their adaptations to this symbiosis remain unexplored. Results: Here, we present and characterize adaptations of the cold seep-dwelling tubeworm Lamellibrachia luymesi, one of the longest-lived solitary invertebrates. We sequenced the worm’s ~ 688-Mb haploid genome with an overall completeness of ~ 95% and discovered that L. luymesi lacks many genes essential in amino acid biosynthesis, obligating them to products provided by symbionts. Interestingly, the host is known to carry hydrogen sulfide to thiotrophic endosymbionts using hemoglobin. We also found an expansion of hemoglobin B1 genes, many of which possess a free cysteine residue which is hypothesized to function in sulfide binding. -
Hox Gene Expression During Development of the Phoronid Phoronopsis Harmeri
Hox gene expression during development of the phoronid Phoronopsis harmeri Ludwik Gąsiorowski Universitetet i Bergen Andreas Hejnol ( [email protected] ) https://orcid.org/0000-0003-2196-8507 Research Keywords: Lophophorata, Spiralia, biphasic life cycle, intercalation, life history evolution, body plan, indirect development, Lox2, head, brain Posted Date: January 29th, 2020 DOI: https://doi.org/10.21203/rs.2.17983/v2 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on February 10th, 2020. See the published version at https://doi.org/10.1186/s13227-020-0148-z. Page 1/16 Abstract Background: Phoronida is a small group of marine worm-like suspension feeders, which together with brachiopods and bryozoans form the clade Lophophorata. Although their development is well studied on the morphological level, data regarding gene expression during this process are scarce and restricted to the analysis of relatively few transcription factors. Here we present a description of the expression patterns of Hox genes during the embryonic and larval development of the phoronid Phoronopsis harmeri. Results: We identied sequences of eight Hox genes in the transcriptome of Ph. harmeri and determined their expression pattern during embryonic and larval development using whole mount in situ hybridization. We found that none of the Hox genes is expressed during embryonic development. Instead their expression is initiated in the later developmental stages, when the larval body is already formed. In the investigated initial larval stages the Hox genes are expressed in the non-collinear manner in the posterior body of the larvae: in the telotroch and the structures that represent rudiments of the adult worm. -