Tensorflow, Pytorch and Horovod
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Intro to Tensorflow 2.0 MBL, August 2019
Intro to TensorFlow 2.0 MBL, August 2019 Josh Gordon (@random_forests) 1 Agenda 1 of 2 Exercises ● Fashion MNIST with dense layers ● CIFAR-10 with convolutional layers Concepts (as many as we can intro in this short time) ● Gradient descent, dense layers, loss, softmax, convolution Games ● QuickDraw Agenda 2 of 2 Walkthroughs and new tutorials ● Deep Dream and Style Transfer ● Time series forecasting Games ● Sketch RNN Learning more ● Book recommendations Deep Learning is representation learning Image link Image link Latest tutorials and guides tensorflow.org/beta News and updates medium.com/tensorflow twitter.com/tensorflow Demo PoseNet and BodyPix bit.ly/pose-net bit.ly/body-pix TensorFlow for JavaScript, Swift, Android, and iOS tensorflow.org/js tensorflow.org/swift tensorflow.org/lite Minimal MNIST in TF 2.0 A linear model, neural network, and deep neural network - then a short exercise. bit.ly/mnist-seq ... ... ... Softmax model = Sequential() model.add(Dense(256, activation='relu',input_shape=(784,))) model.add(Dense(128, activation='relu')) model.add(Dense(10, activation='softmax')) Linear model Neural network Deep neural network ... ... Softmax activation After training, select all the weights connected to this output. model.layers[0].get_weights() # Your code here # Select the weights for a single output # ... img = weights.reshape(28,28) plt.imshow(img, cmap = plt.get_cmap('seismic')) ... ... Softmax activation After training, select all the weights connected to this output. Exercise 1 (option #1) Exercise: bit.ly/mnist-seq Reference: tensorflow.org/beta/tutorials/keras/basic_classification TODO: Add a validation set. Add code to plot loss vs epochs (next slide). Exercise 1 (option #2) bit.ly/ijcav_adv Answers: next slide. -
Deep Learning Frameworks | NVIDIA Developer
4/10/2017 Deep Learning Frameworks | NVIDIA Developer Deep Learning Frameworks The NVIDIA Deep Learning SDK accelerates widelyused deep learning frameworks such as Caffe, CNTK, TensorFlow, Theano and Torch as well as many other deep learning applications. Choose a deep learning framework from the list below, download the supported version of cuDNN and follow the instructions on the framework page to get started. Caffe is a deep learning framework made with expression, speed, and modularity in mind. Caffe is developed by the Berkeley Vision and Learning Center (BVLC), as well as community contributors and is popular for computer vision. Caffe supports cuDNN v5 for GPU acceleration. Supported interfaces: C, C++, Python, MATLAB, Command line interface Learning Resources Deep learning course: Getting Started with the Caffe Framework Blog: Deep Learning for Computer Vision with Caffe and cuDNN Download Caffe Download cuDNN The Microsoft Cognitive Toolkit —previously known as CNTK— is a unified deeplearning toolkit from Microsoft Research that makes it easy to train and combine popular model types across multiple GPUs and servers. Microsoft Cognitive Toolkit implements highly efficient CNN and RNN training for speech, image and text data. Microsoft Cognitive Toolkit supports cuDNN v5.1 for GPU acceleration. Supported interfaces: Python, C++, C# and Command line interface Download CNTK Download cuDNN TensorFlow is a software library for numerical computation using data flow graphs, developed by Google’s Machine Intelligence research organization. TensorFlow supports cuDNN v5.1 for GPU acceleration. Supported interfaces: C++, Python Download TensorFlow Download cuDNN https://developer.nvidia.com/deeplearningframeworks 1/3 4/10/2017 Deep Learning Frameworks | NVIDIA Developer Theano is a math expression compiler that efficiently defines, optimizes, and evaluates mathematical expressions involving multidimensional arrays. -
Python on Gpus (Work in Progress!)
Python on GPUs (work in progress!) Laurie Stephey GPUs for Science Day, July 3, 2019 Rollin Thomas, NERSC Lawrence Berkeley National Laboratory Python is friendly and popular Screenshots from: https://www.tiobe.com/tiobe-index/ So you want to run Python on a GPU? You have some Python code you like. Can you just run it on a GPU? import numpy as np from scipy import special import gpu ? Unfortunately no. What are your options? Right now, there is no “right” answer ● CuPy ● Numba ● pyCUDA (https://mathema.tician.de/software/pycuda/) ● pyOpenCL (https://mathema.tician.de/software/pyopencl/) ● Rewrite kernels in C, Fortran, CUDA... DESI: Our case study Now Perlmutter 2020 Goal: High quality output spectra Spectral Extraction CuPy (https://cupy.chainer.org/) ● Developed by Chainer, supported in RAPIDS ● Meant to be a drop-in replacement for NumPy ● Some, but not all, NumPy coverage import numpy as np import cupy as cp cpu_ans = np.abs(data) #same thing on gpu gpu_data = cp.asarray(data) gpu_temp = cp.abs(gpu_data) gpu_ans = cp.asnumpy(gpu_temp) Screenshot from: https://docs-cupy.chainer.org/en/stable/reference/comparison.html eigh in CuPy ● Important function for DESI ● Compared CuPy eigh on Cori Volta GPU to Cori Haswell and Cori KNL ● Tried “divide-and-conquer” approach on both CPU and GPU (1, 2, 5, 10 divisions) ● Volta wins only at very large matrix sizes ● Major pro: eigh really easy to use in CuPy! legval in CuPy ● Easy to convert from NumPy arrays to CuPy arrays ● This function is ~150x slower than the cpu version! ● This implies there -
Introduction Shrinkage Factor Reference
Comparison study for implementation efficiency of CUDA GPU parallel computation with the fast iterative shrinkage-thresholding algorithm Younsang Cho, Donghyeon Yu Department of Statistics, Inha university 4. TensorFlow functions in Python (TF-F) Introduction There are some functions executed on GPU in TensorFlow. So, we implemented our algorithm • Parallel computation using graphics processing units (GPUs) gets much attention and is just using that functions. efficient for single-instruction multiple-data (SIMD) processing. 5. Neural network with TensorFlow in Python (TF-NN) • Theoretical computation capacity of the GPU device has been growing fast and is much higher Neural network model is flexible, and the LASSO problem can be represented as a simple than that of the CPU nowadays (Figure 1). neural network with an ℓ1-regularized loss function • There are several platforms for conducting parallel computation on GPUs using compute 6. Using dynamic link library in Python (P-DLL) unified device architecture (CUDA) developed by NVIDIA. (Python, PyCUDA, Tensorflow, etc. ) As mentioned before, we can load DLL files, which are written in CUDA C, using "ctypes.CDLL" • However, it is unclear what platform is the most efficient for CUDA. that is a built-in function in Python. 7. Using dynamic link library in R (R-DLL) We can also load DLL files, which are written in CUDA C, using "dyn.load" in R. FISTA (Fast Iterative Shrinkage-Thresholding Algorithm) We consider FISTA (Beck and Teboulle, 2009) with backtracking as the following: " Step 0. Take �! > 0, some � > 1, and �! ∈ ℝ . Set �# = �!, �# = 1. %! Step k. � ≥ 1 Find the smallest nonnegative integers �$ such that with �g = � �$&# � �(' �$ ≤ �(' �(' �$ , �$ . -
Keras2c: a Library for Converting Keras Neural Networks to Real-Time Compatible C
Keras2c: A library for converting Keras neural networks to real-time compatible C Rory Conlina,∗, Keith Ericksonb, Joeseph Abbatec, Egemen Kolemena,b,∗ aDepartment of Mechanical and Aerospace Engineering, Princeton University, Princeton NJ 08544, USA bPrinceton Plasma Physics Laboratory, Princeton NJ 08544, USA cDepartment of Astrophysical Sciences at Princeton University, Princeton NJ 08544, USA Abstract With the growth of machine learning models and neural networks in mea- surement and control systems comes the need to deploy these models in a way that is compatible with existing systems. Existing options for deploying neural networks either introduce very high latency, require expensive and time con- suming work to integrate into existing code bases, or only support a very lim- ited subset of model types. We have therefore developed a new method called Keras2c, which is a simple library for converting Keras/TensorFlow neural net- work models into real-time compatible C code. It supports a wide range of Keras layers and model types including multidimensional convolutions, recurrent lay- ers, multi-input/output models, and shared layers. Keras2c re-implements the core components of Keras/TensorFlow required for predictive forward passes through neural networks in pure C, relying only on standard library functions considered safe for real-time use. The core functionality consists of ∼ 1500 lines of code, making it lightweight and easy to integrate into existing codebases. Keras2c has been successfully tested in experiments and is currently in use on the plasma control system at the DIII-D National Fusion Facility at General Atomics in San Diego. 1. Motivation TensorFlow[1] is one of the most popular libraries for developing and training neural networks. -
Automated Elastic Pipelining for Distributed Training of Transformers
PipeTransformer: Automated Elastic Pipelining for Distributed Training of Transformers Chaoyang He 1 Shen Li 2 Mahdi Soltanolkotabi 1 Salman Avestimehr 1 Abstract the-art convolutional networks ResNet-152 (He et al., 2016) and EfficientNet (Tan & Le, 2019). To tackle the growth in The size of Transformer models is growing at an model sizes, researchers have proposed various distributed unprecedented rate. It has taken less than one training techniques, including parameter servers (Li et al., year to reach trillion-level parameters since the 2014; Jiang et al., 2020; Kim et al., 2019), pipeline paral- release of GPT-3 (175B). Training such models lel (Huang et al., 2019; Park et al., 2020; Narayanan et al., requires both substantial engineering efforts and 2019), intra-layer parallel (Lepikhin et al., 2020; Shazeer enormous computing resources, which are luxu- et al., 2018; Shoeybi et al., 2019), and zero redundancy data ries most research teams cannot afford. In this parallel (Rajbhandari et al., 2019). paper, we propose PipeTransformer, which leverages automated elastic pipelining for effi- T0 (0% trained) T1 (35% trained) T2 (75% trained) T3 (100% trained) cient distributed training of Transformer models. In PipeTransformer, we design an adaptive on the fly freeze algorithm that can identify and freeze some layers gradually during training, and an elastic pipelining system that can dynamically Layer (end of training) Layer (end of training) Layer (end of training) Layer (end of training) Similarity score allocate resources to train the remaining active layers. More specifically, PipeTransformer automatically excludes frozen layers from the Figure 1. Interpretable Freeze Training: DNNs converge bottom pipeline, packs active layers into fewer GPUs, up (Results on CIFAR10 using ResNet). -
Prototyping and Developing GPU-Accelerated Solutions with Python and CUDA Luciano Martins and Robert Sohigian, 2018-11-22 Introduction to Python
Prototyping and Developing GPU-Accelerated Solutions with Python and CUDA Luciano Martins and Robert Sohigian, 2018-11-22 Introduction to Python GPU-Accelerated Computing NVIDIA® CUDA® technology Why Use Python with GPUs? Agenda Methods: PyCUDA, Numba, CuPy, and scikit-cuda Summary Q&A 2 Introduction to Python Released by Guido van Rossum in 1991 The Zen of Python: Beautiful is better than ugly. Explicit is better than implicit. Simple is better than complex. Complex is better than complicated. Flat is better than nested. Interpreted language (CPython, Jython, ...) Dynamically typed; based on objects 3 Introduction to Python Small core structure: ~30 keywords ~ 80 built-in functions Indentation is a pretty serious thing Dynamically typed; based on objects Binds to many different languages Supports GPU acceleration via modules 4 Introduction to Python 5 Introduction to Python 6 Introduction to Python 7 GPU-Accelerated Computing “[T]the use of a graphics processing unit (GPU) together with a CPU to accelerate deep learning, analytics, and engineering applications” (NVIDIA) Most common GPU-accelerated operations: Large vector/matrix operations (Basic Linear Algebra Subprograms - BLAS) Speech recognition Computer vision 8 GPU-Accelerated Computing Important concepts for GPU-accelerated computing: Host ― the machine running the workload (CPU) Device ― the GPUs inside of a host Kernel ― the code part that runs on the GPU SIMT ― Single Instruction Multiple Threads 9 GPU-Accelerated Computing 10 GPU-Accelerated Computing 11 CUDA Parallel computing -
Comparative Study of Deep Learning Software Frameworks
Comparative Study of Deep Learning Software Frameworks Soheil Bahrampour, Naveen Ramakrishnan, Lukas Schott, Mohak Shah Research and Technology Center, Robert Bosch LLC {Soheil.Bahrampour, Naveen.Ramakrishnan, fixed-term.Lukas.Schott, Mohak.Shah}@us.bosch.com ABSTRACT such as dropout and weight decay [2]. As the popular- Deep learning methods have resulted in significant perfor- ity of the deep learning methods have increased over the mance improvements in several application domains and as last few years, several deep learning software frameworks such several software frameworks have been developed to have appeared to enable efficient development and imple- facilitate their implementation. This paper presents a com- mentation of these methods. The list of available frame- parative study of five deep learning frameworks, namely works includes, but is not limited to, Caffe, DeepLearning4J, Caffe, Neon, TensorFlow, Theano, and Torch, on three as- deepmat, Eblearn, Neon, PyLearn, TensorFlow, Theano, pects: extensibility, hardware utilization, and speed. The Torch, etc. Different frameworks try to optimize different as- study is performed on several types of deep learning ar- pects of training or deployment of a deep learning algorithm. chitectures and we evaluate the performance of the above For instance, Caffe emphasises ease of use where standard frameworks when employed on a single machine for both layers can be easily configured without hard-coding while (multi-threaded) CPU and GPU (Nvidia Titan X) settings. Theano provides automatic differentiation capabilities which The speed performance metrics used here include the gradi- facilitates flexibility to modify architecture for research and ent computation time, which is important during the train- development. Several of these frameworks have received ing phase of deep networks, and the forward time, which wide attention from the research community and are well- is important from the deployment perspective of trained developed allowing efficient training of deep networks with networks. -
Tangent: Automatic Differentiation Using Source-Code Transformation for Dynamically Typed Array Programming
Tangent: Automatic differentiation using source-code transformation for dynamically typed array programming Bart van Merriënboer Dan Moldovan Alexander B Wiltschko MILA, Google Brain Google Brain Google Brain [email protected] [email protected] [email protected] Abstract The need to efficiently calculate first- and higher-order derivatives of increasingly complex models expressed in Python has stressed or exceeded the capabilities of available tools. In this work, we explore techniques from the field of automatic differentiation (AD) that can give researchers expressive power, performance and strong usability. These include source-code transformation (SCT), flexible gradient surgery, efficient in-place array operations, and higher-order derivatives. We implement and demonstrate these ideas in the Tangent software library for Python, the first AD framework for a dynamic language that uses SCT. 1 Introduction Many applications in machine learning rely on gradient-based optimization, or at least the efficient calculation of derivatives of models expressed as computer programs. Researchers have a wide variety of tools from which they can choose, particularly if they are using the Python language [21, 16, 24, 2, 1]. These tools can generally be characterized as trading off research or production use cases, and can be divided along these lines by whether they implement automatic differentiation using operator overloading (OO) or SCT. SCT affords more opportunities for whole-program optimization, while OO makes it easier to support convenient syntax in Python, like data-dependent control flow, or advanced features such as custom partial derivatives. We show here that it is possible to offer the programming flexibility usually thought to be exclusive to OO-based tools in an SCT framework. -
Comparative Study of Caffe, Neon, Theano, and Torch
Workshop track - ICLR 2016 COMPARATIVE STUDY OF CAFFE,NEON,THEANO, AND TORCH FOR DEEP LEARNING Soheil Bahrampour, Naveen Ramakrishnan, Lukas Schott, Mohak Shah Bosch Research and Technology Center fSoheil.Bahrampour,Naveen.Ramakrishnan, fixed-term.Lukas.Schott,[email protected] ABSTRACT Deep learning methods have resulted in significant performance improvements in several application domains and as such several software frameworks have been developed to facilitate their implementation. This paper presents a comparative study of four deep learning frameworks, namely Caffe, Neon, Theano, and Torch, on three aspects: extensibility, hardware utilization, and speed. The study is per- formed on several types of deep learning architectures and we evaluate the per- formance of the above frameworks when employed on a single machine for both (multi-threaded) CPU and GPU (Nvidia Titan X) settings. The speed performance metrics used here include the gradient computation time, which is important dur- ing the training phase of deep networks, and the forward time, which is important from the deployment perspective of trained networks. For convolutional networks, we also report how each of these frameworks support various convolutional algo- rithms and their corresponding performance. From our experiments, we observe that Theano and Torch are the most easily extensible frameworks. We observe that Torch is best suited for any deep architecture on CPU, followed by Theano. It also achieves the best performance on the GPU for large convolutional and fully connected networks, followed closely by Neon. Theano achieves the best perfor- mance on GPU for training and deployment of LSTM networks. Finally Caffe is the easiest for evaluating the performance of standard deep architectures. -
Torch7: a Matlab-Like Environment for Machine Learning
Torch7: A Matlab-like Environment for Machine Learning Ronan Collobert1 Koray Kavukcuoglu2 Clement´ Farabet3;4 1 Idiap Research Institute 2 NEC Laboratories America Martigny, Switzerland Princeton, NJ, USA 3 Courant Institute of Mathematical Sciences 4 Universite´ Paris-Est New York University, New York, NY, USA Equipe´ A3SI - ESIEE Paris, France Abstract Torch7 is a versatile numeric computing framework and machine learning library that extends Lua. Its goal is to provide a flexible environment to design and train learning machines. Flexibility is obtained via Lua, an extremely lightweight scripting language. High performance is obtained via efficient OpenMP/SSE and CUDA implementations of low-level numeric routines. Torch7 can easily be in- terfaced to third-party software thanks to Lua’s light interface. 1 Torch7 Overview With Torch7, we aim at providing a framework with three main advantages: (1) it should ease the development of numerical algorithms, (2) it should be easily extended (including the use of other libraries), and (3) it should be fast. We found that a scripting (interpreted) language with a good C API appears as a convenient solu- tion to “satisfy” the constraint (2). First, a high-level language makes the process of developing a program simpler and more understandable than a low-level language. Second, if the programming language is interpreted, it becomes also easier to quickly try various ideas in an interactive manner. And finally, assuming a good C API, the scripting language becomes the “glue” between hetero- geneous libraries: different structures of the same concept (coming from different libraries) can be hidden behind a unique structure in the scripting language, while keeping all the functionalities coming from all the different libraries. -
Tensorflow, Theano, Keras, Torch, Caffe Vicky Kalogeiton, Stéphane Lathuilière, Pauline Luc, Thomas Lucas, Konstantin Shmelkov Introduction
TensorFlow, Theano, Keras, Torch, Caffe Vicky Kalogeiton, Stéphane Lathuilière, Pauline Luc, Thomas Lucas, Konstantin Shmelkov Introduction TensorFlow Google Brain, 2015 (rewritten DistBelief) Theano University of Montréal, 2009 Keras François Chollet, 2015 (now at Google) Torch Facebook AI Research, Twitter, Google DeepMind Caffe Berkeley Vision and Learning Center (BVLC), 2013 Outline 1. Introduction of each framework a. TensorFlow b. Theano c. Keras d. Torch e. Caffe 2. Further comparison a. Code + models b. Community and documentation c. Performance d. Model deployment e. Extra features 3. Which framework to choose when ..? Introduction of each framework TensorFlow architecture 1) Low-level core (C++/CUDA) 2) Simple Python API to define the computational graph 3) High-level API (TF-Learn, TF-Slim, soon Keras…) TensorFlow computational graph - auto-differentiation! - easy multi-GPU/multi-node - native C++ multithreading - device-efficient implementation for most ops - whole pipeline in the graph: data loading, preprocessing, prefetching... TensorBoard TensorFlow development + bleeding edge (GitHub yay!) + division in core and contrib => very quick merging of new hotness + a lot of new related API: CRF, BayesFlow, SparseTensor, audio IO, CTC, seq2seq + so it can easily handle images, videos, audio, text... + if you really need a new native op, you can load a dynamic lib - sometimes contrib stuff disappears or moves - recently introduced bells and whistles are barely documented Presentation of Theano: - Maintained by Montréal University group. - Pioneered the use of a computational graph. - General machine learning tool -> Use of Lasagne and Keras. - Very popular in the research community, but not elsewhere. Falling behind. What is it like to start using Theano? - Read tutorials until you no longer can, then keep going.