A Whirlwind Tour of the World of (∞,1)-Categories
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Experience Implementing a Performant Category-Theory Library in Coq
Experience Implementing a Performant Category-Theory Library in Coq Jason Gross, Adam Chlipala, and David I. Spivak Massachusetts Institute of Technology, Cambridge, MA, USA [email protected], [email protected], [email protected] Abstract. We describe our experience implementing a broad category- theory library in Coq. Category theory and computational performance are not usually mentioned in the same breath, but we have needed sub- stantial engineering effort to teach Coq to cope with large categorical constructions without slowing proof script processing unacceptably. In this paper, we share the lessons we have learned about how to repre- sent very abstract mathematical objects and arguments in Coq and how future proof assistants might be designed to better support such rea- soning. One particular encoding trick to which we draw attention al- lows category-theoretic arguments involving duality to be internalized in Coq's logic with definitional equality. Ours may be the largest Coq development to date that uses the relatively new Coq version developed by homotopy type theorists, and we reflect on which new features were especially helpful. Keywords: Coq · category theory · homotopy type theory · duality · performance 1 Introduction Category theory [36] is a popular all-encompassing mathematical formalism that casts familiar mathematical ideas from many domains in terms of a few unifying concepts. A category can be described as a directed graph plus algebraic laws stating equivalences between paths through the graph. Because of this spar- tan philosophical grounding, category theory is sometimes referred to in good humor as \formal abstract nonsense." Certainly the popular perception of cat- egory theory is quite far from pragmatic issues of implementation. -
Double Categories of Open Dynamical Systems (Extended Abstract)
Double Categories of Open Dynamical Systems (Extended Abstract) David Jaz Myers Johns Hopkins University A (closed) dynamical system is a notion of how things can be, together with a notion of how they may change given how they are. The idea and mathematics of closed dynamical systems has proven incredibly useful in those sciences that can isolate their object of study from its environment. But many changing situations in the world cannot be meaningfully isolated from their environment – a cell will die if it is removed from everything beyond its walls. To study systems that interact with their environment, and to design such systems in a modular way, we need a robust theory of open dynamical systems. In this extended abstract, we put forward a general definition of open dynamical system. We define two general sorts of morphisms between these systems: covariant morphisms which include trajectories, steady states, and periodic orbits; and contravariant morphisms which allow for plugging variables of some systems into parameters of other systems. We define an indexed double category of open dynamical systems indexed by their interface and use a double Grothendieck construction to construct a double category of open dynamical systems. In our main theorem, we construct covariantly representable indexed double functors from the indexed double category of dynamical systems to an indexed double category of spans. This shows that all covariantly representable structures of dynamical systems — including trajectories, steady states, and periodic orbits — compose according to the laws of matrix arithmetic. 1 Open Dynamical Systems The notion of a dynamical system pervades mathematical modeling in the sciences. -
Applied Category Theory for Genomics – an Initiative
Applied Category Theory for Genomics { An Initiative Yanying Wu1,2 1Centre for Neural Circuits and Behaviour, University of Oxford, UK 2Department of Physiology, Anatomy and Genetics, University of Oxford, UK 06 Sept, 2020 Abstract The ultimate secret of all lives on earth is hidden in their genomes { a totality of DNA sequences. We currently know the whole genome sequence of many organisms, while our understanding of the genome architecture on a systematic level remains rudimentary. Applied category theory opens a promising way to integrate the humongous amount of heterogeneous informations in genomics, to advance our knowledge regarding genome organization, and to provide us with a deep and holistic view of our own genomes. In this work we explain why applied category theory carries such a hope, and we move on to show how it could actually do so, albeit in baby steps. The manuscript intends to be readable to both mathematicians and biologists, therefore no prior knowledge is required from either side. arXiv:2009.02822v1 [q-bio.GN] 6 Sep 2020 1 Introduction DNA, the genetic material of all living beings on this planet, holds the secret of life. The complete set of DNA sequences in an organism constitutes its genome { the blueprint and instruction manual of that organism, be it a human or fly [1]. Therefore, genomics, which studies the contents and meaning of genomes, has been standing in the central stage of scientific research since its birth. The twentieth century witnessed three milestones of genomics research [1]. It began with the discovery of Mendel's laws of inheritance [2], sparked a climax in the middle with the reveal of DNA double helix structure [3], and ended with the accomplishment of a first draft of complete human genome sequences [4]. -
Categories of Sets with a Group Action
Categories of sets with a group action Bachelor Thesis of Joris Weimar under supervision of Professor S.J. Edixhoven Mathematisch Instituut, Universiteit Leiden Leiden, 13 June 2008 Contents 1 Introduction 1 1.1 Abstract . .1 1.2 Working method . .1 1.2.1 Notation . .1 2 Categories 3 2.1 Basics . .3 2.1.1 Functors . .4 2.1.2 Natural transformations . .5 2.2 Categorical constructions . .6 2.2.1 Products and coproducts . .6 2.2.2 Fibered products and fibered coproducts . .9 3 An equivalence of categories 13 3.1 G-sets . 13 3.2 Covering spaces . 15 3.2.1 The fundamental group . 15 3.2.2 Covering spaces and the homotopy lifting property . 16 3.2.3 Induced homomorphisms . 18 3.2.4 Classifying covering spaces through the fundamental group . 19 3.3 The equivalence . 24 3.3.1 The functors . 25 4 Applications and examples 31 4.1 Automorphisms and recovering the fundamental group . 31 4.2 The Seifert-van Kampen theorem . 32 4.2.1 The categories C1, C2, and πP -Set ................... 33 4.2.2 The functors . 34 4.2.3 Example . 36 Bibliography 38 Index 40 iii 1 Introduction 1.1 Abstract In the 40s, Mac Lane and Eilenberg introduced categories. Although by some referred to as abstract nonsense, the idea of categories allows one to talk about mathematical objects and their relationions in a general setting. Its origins lie in the field of algebraic topology, one of the topics that will be explored in this thesis. First, a concise introduction to categories will be given. -
Types Are Internal Infinity-Groupoids Antoine Allioux, Eric Finster, Matthieu Sozeau
Types are internal infinity-groupoids Antoine Allioux, Eric Finster, Matthieu Sozeau To cite this version: Antoine Allioux, Eric Finster, Matthieu Sozeau. Types are internal infinity-groupoids. 2021. hal- 03133144 HAL Id: hal-03133144 https://hal.inria.fr/hal-03133144 Preprint submitted on 5 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Types are Internal 1-groupoids Antoine Allioux∗, Eric Finstery, Matthieu Sozeauz ∗Inria & University of Paris, France [email protected] yUniversity of Birmingham, United Kingdom ericfi[email protected] zInria, France [email protected] Abstract—By extending type theory with a universe of defini- attempts to import these ideas into plain homotopy type theory tionally associative and unital polynomial monads, we show how have, so far, failed. This appears to be a result of a kind of to arrive at a definition of opetopic type which is able to encode circularity: all of the known classical techniques at some point a number of fully coherent algebraic structures. In particular, our approach leads to a definition of 1-groupoid internal to rely on set-level algebraic structures themselves (presheaves, type theory and we prove that the type of such 1-groupoids is operads, or something similar) as a means of presenting or equivalent to the universe of types. -
Perverse Sheaves
Perverse Sheaves Bhargav Bhatt Fall 2015 1 September 8, 2015 The goal of this class is to introduce perverse sheaves, and how to work with it; plus some applications. Background For more background, see Kleiman's paper entitled \The development/history of intersection homology theory". On manifolds, the idea is that you can intersect cycles via Poincar´eduality|we want to be able to do this on singular spces, not just manifolds. Deligne figured out how to compute intersection homology via sheaf cohomology, and does not use anything about cycles|only pullbacks and truncations of complexes of sheaves. In any derived category you can do this|even in characteristic p. The basic summary is that we define an abelian subcategory that lives inside the derived category of constructible sheaves, which we call the category of perverse sheaves. We want to get to what is called the decomposition theorem. Outline of Course 1. Derived categories, t-structures 2. Six Functors 3. Perverse sheaves—definition, some properties 4. Statement of decomposition theorem|\yoga of weights" 5. Application 1: Beilinson, et al., \there are enough perverse sheaves", they generate the derived category of constructible sheaves 6. Application 2: Radon transforms. Use to understand monodromy of hyperplane sections. 7. Some geometric ideas to prove the decomposition theorem. If you want to understand everything in the course you need a lot of background. We will assume Hartshorne- level algebraic geometry. We also need constructible sheaves|look at Sheaves in Topology. Problem sets will be given, but not collected; will be on the webpage. There are more references than BBD; they will be online. -
Elements of -Category Theory Joint with Dominic Verity
Emily Riehl Johns Hopkins University Elements of ∞-Category Theory joint with Dominic Verity MATRIX seminar ∞-categories in the wild A recent phenomenon in certain areas of mathematics is the use of ∞-categories to state and prove theorems: • 푛-jets correspond to 푛-excisive functors in the Goodwillie tangent structure on the ∞-category of differentiable ∞-categories — Bauer–Burke–Ching, “Tangent ∞-categories and Goodwillie calculus” • 푆1-equivariant quasicoherent sheaves on the loop space of a smooth scheme correspond to sheaves with a flat connection as an equivalence of ∞-categories — Ben-Zvi–Nadler, “Loop spaces and connections” • the factorization homology of an 푛-cobordism with coefficients in an 푛-disk algebra is linearly dual to the factorization homology valued in the formal moduli functor as a natural equivalence between functors between ∞-categories — Ayala–Francis, “Poincaré/Koszul duality” Here “∞-category” is a nickname for (∞, 1)-category, a special case of an (∞, 푛)-category, a weak infinite dimensional category in which all morphisms above dimension 푛 are invertible (for fixed 0 ≤ 푛 ≤ ∞). What are ∞-categories and what are they for? It frames a possible template for any mathematical theory: the theory should have nouns and verbs, i.e., objects, and morphisms, and there should be an explicit notion of composition related to the morphisms; the theory should, in brief, be packaged by a category. —Barry Mazur, “When is one thing equal to some other thing?” An ∞-category frames a template with nouns, verbs, adjectives, adverbs, pronouns, prepositions, conjunctions, interjections,… which has: • objects • and 1-morphisms between them • • • • composition witnessed by invertible 2-morphisms 푓 푔 훼≃ ℎ∘푔∘푓 • • • • 푔∘푓 푓 ℎ∘푔 훾≃ witnessed by • associativity • ≃ 푔∘푓 훼≃ 훽 ℎ invertible 3-morphisms 푔 • with these witnesses coherent up to invertible morphisms all the way up. -
Topological Categories, Quantaloids and Isbell Adjunctions
Topological categories, quantaloids and Isbell adjunctions Lili Shen1, Walter Tholen1,∗ Department of Mathematics and Statistics, York University, Toronto, Ontario, Canada, M3J 1P3 Dedicated to Eva Colebunders on the occasion of her 65th birthday Abstract In fairly elementary terms this paper presents, and expands upon, a recent result by Garner by which the notion of topologicity of a concrete functor is subsumed under the concept of total cocompleteness of enriched category theory. Motivated by some key results of the 1970s, the paper develops all needed ingredients from the theory of quantaloids in order to place essential results of categorical topology into the context of quantaloid-enriched category theory, a field that previously drew its motivation and applications from other domains, such as quantum logic. Keywords: Concrete category, topological category, enriched category, quantaloid, total category, Isbell adjunction 2010 MSC: 18D20, 54A99, 06F99 1. Introduction Garner's [7] recent discovery that the fundamental notion of topologicity of a concrete functor may be interpreted as precisely total (co)completeness for categories enriched in a free quantaloid reconciles two lines of research that for decades had been perceived by researchers in the re- spectively fields as almost intrinsically separate, occasionally with divisive arguments. While the latter notion is rooted in Eilenberg's and Kelly's enriched category theory (see [6, 15]) and the seminal paper by Street and Walters [21] on totality, the former notion goes back to Br¨ummer's thesis [3] and the pivotal papers by Wyler [27, 28] and Herrlich [9] that led to the development of categorical topology and the categorical exploration of a multitude of new structures; see, for example, the survey by Colebunders and Lowen [16]. -
Categorical Semantics of Constructive Set Theory
Categorical semantics of constructive set theory Beim Fachbereich Mathematik der Technischen Universit¨atDarmstadt eingereichte Habilitationsschrift von Benno van den Berg, PhD aus Emmen, die Niederlande 2 Contents 1 Introduction to the thesis 7 1.1 Logic and metamathematics . 7 1.2 Historical intermezzo . 8 1.3 Constructivity . 9 1.4 Constructive set theory . 11 1.5 Algebraic set theory . 15 1.6 Contents . 17 1.7 Warning concerning terminology . 18 1.8 Acknowledgements . 19 2 A unified approach to algebraic set theory 21 2.1 Introduction . 21 2.2 Constructive set theories . 24 2.3 Categories with small maps . 25 2.3.1 Axioms . 25 2.3.2 Consequences . 29 2.3.3 Strengthenings . 31 2.3.4 Relation to other settings . 32 2.4 Models of set theory . 33 2.5 Examples . 35 2.6 Predicative sheaf theory . 36 2.7 Predicative realizability . 37 3 Exact completion 41 3.1 Introduction . 41 3 4 CONTENTS 3.2 Categories with small maps . 45 3.2.1 Classes of small maps . 46 3.2.2 Classes of display maps . 51 3.3 Axioms for classes of small maps . 55 3.3.1 Representability . 55 3.3.2 Separation . 55 3.3.3 Power types . 55 3.3.4 Function types . 57 3.3.5 Inductive types . 58 3.3.6 Infinity . 60 3.3.7 Fullness . 61 3.4 Exactness and its applications . 63 3.5 Exact completion . 66 3.6 Stability properties of axioms for small maps . 73 3.6.1 Representability . 74 3.6.2 Separation . 74 3.6.3 Power types . -
Algebraic Models of Homotopy Types and the Homotopy Hypothesis
Algebraic models of homotopy types and the homotopy hypothesis Simon Henry September 16, 2016 Abstract We introduce and study a notion of cylinder coherator similar to the notion of Grothendieck coherator which define more flexible notion of weak ∞-groupoids. We show that each such cylinder coherator produces a com- binatorial semi-model category of weak ∞-groupoids, whose objects are all fibrant and which is in a precise sense “freely generated by an object”. We show that all those semi model categories are Quillen equivalent together and Quillen to the model category of spaces. A general procedure is given to produce such coherator, and several explicit examples are presented: one which is simplicial in nature and allows the comparison to the model category for spaces. A second example can be describe as the category of globular sets endowed with “all the operations that can be defined within a weak type theory”. This second notion seem to provide a definition of weak infinity groupoids which can be defined internally within type the- ory and which is classically equivalent to homotopy types. Finally, the category of Grothendieck ∞-groupoids for a fixed Grothendieck coherator would be an example of this formalism under a seemingly simple conjec- ture whose validity is shown to imply Grothendieck homotopy hypothesis. This conjecture seem to sum up what needs to be proved at a technical level to ensure that the theory of Grothendieck weak ∞-groupoid is well behaved. Contents 1 introduction 2 1.1 Motivations.............................. 2 arXiv:1609.04622v1 [math.CT] 15 Sep 2016 1.2 Introduction.............................. 5 1.3 Preliminaries . -
Homotopy Theory of Diagrams and Cw-Complexes Over a Category
Can. J. Math.Vol. 43 (4), 1991 pp. 814-824 HOMOTOPY THEORY OF DIAGRAMS AND CW-COMPLEXES OVER A CATEGORY ROBERT J. PIACENZA Introduction. The purpose of this paper is to introduce the notion of a CW com plex over a topological category. The main theorem of this paper gives an equivalence between the homotopy theory of diagrams of spaces based on a topological category and the homotopy theory of CW complexes over the same base category. A brief description of the paper goes as follows: in Section 1 we introduce the homo topy category of diagrams of spaces based on a fixed topological category. In Section 2 homotopy groups for diagrams are defined. These are used to define the concept of weak equivalence and J-n equivalence that generalize the classical definition. In Section 3 we adapt the classical theory of CW complexes to develop a cellular theory for diagrams. In Section 4 we use sheaf theory to define a reasonable cohomology theory of diagrams and compare it to previously defined theories. In Section 5 we define a closed model category structure for the homotopy theory of diagrams. We show this Quillen type ho motopy theory is equivalent to the homotopy theory of J-CW complexes. In Section 6 we apply our constructions and results to prove a useful result in equivariant homotopy theory originally proved by Elmendorf by a different method. 1. Homotopy theory of diagrams. Throughout this paper we let Top be the carte sian closed category of compactly generated spaces in the sense of Vogt [10]. -
Diagrammatics in Categorification and Compositionality
Diagrammatics in Categorification and Compositionality by Dmitry Vagner Department of Mathematics Duke University Date: Approved: Ezra Miller, Supervisor Lenhard Ng Sayan Mukherjee Paul Bendich Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Mathematics in the Graduate School of Duke University 2019 ABSTRACT Diagrammatics in Categorification and Compositionality by Dmitry Vagner Department of Mathematics Duke University Date: Approved: Ezra Miller, Supervisor Lenhard Ng Sayan Mukherjee Paul Bendich An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Mathematics in the Graduate School of Duke University 2019 Copyright c 2019 by Dmitry Vagner All rights reserved Abstract In the present work, I explore the theme of diagrammatics and their capacity to shed insight on two trends|categorification and compositionality|in and around contemporary category theory. The work begins with an introduction of these meta- phenomena in the context of elementary sets and maps. Towards generalizing their study to more complicated domains, we provide a self-contained treatment|from a pedagogically novel perspective that introduces almost all concepts via diagrammatic language|of the categorical machinery with which we may express the broader no- tions found in the sequel. The work then branches into two seemingly unrelated disciplines: dynamical systems and knot theory. In particular, the former research defines what it means to compose dynamical systems in a manner analogous to how one composes simple maps. The latter work concerns the categorification of the slN link invariant. In particular, we use a virtual filtration to give a more diagrammatic reconstruction of Khovanov-Rozansky homology via a smooth TQFT.