Outlier Detection and Robust Mixture Modeling Using Nonconvex Penalized Likelihood
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A Review on Outlier/Anomaly Detection in Time Series Data
A review on outlier/anomaly detection in time series data ANE BLÁZQUEZ-GARCÍA and ANGEL CONDE, Ikerlan Technology Research Centre, Basque Research and Technology Alliance (BRTA), Spain USUE MORI, Intelligent Systems Group (ISG), Department of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), Spain JOSE A. LOZANO, Intelligent Systems Group (ISG), Department of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), Spain and Basque Center for Applied Mathematics (BCAM), Spain Recent advances in technology have brought major breakthroughs in data collection, enabling a large amount of data to be gathered over time and thus generating time series. Mining this data has become an important task for researchers and practitioners in the past few years, including the detection of outliers or anomalies that may represent errors or events of interest. This review aims to provide a structured and comprehensive state-of-the-art on outlier detection techniques in the context of time series. To this end, a taxonomy is presented based on the main aspects that characterize an outlier detection technique. Additional Key Words and Phrases: Outlier detection, anomaly detection, time series, data mining, taxonomy, software 1 INTRODUCTION Recent advances in technology allow us to collect a large amount of data over time in diverse research areas. Observations that have been recorded in an orderly fashion and which are correlated in time constitute a time series. Time series data mining aims to extract all meaningful knowledge from this data, and several mining tasks (e.g., classification, clustering, forecasting, and outlier detection) have been considered in the literature [Esling and Agon 2012; Fu 2011; Ratanamahatana et al. -
LECTURE 13 Mixture Models and Latent Space Models
LECTURE 13 Mixture models and latent space models We now consider models that have extra unobserved variables. The variables are called latent variables or state variables and the general name for these models are state space models.A classic example from genetics/evolution going back to 1894 is whether the carapace of crabs come from one normal or from a mixture of two normal distributions. We will start with a common example of a latent space model, mixture models. 13.1. Mixture models 13.1.1. Gaussian Mixture Models (GMM) Mixture models make use of latent variables to model different parameters for different groups (or clusters) of data points. For a point xi, let the cluster to which that point belongs be labeled zi; where zi is latent, or unobserved. In this example (though it can be extended to other likelihoods) we will assume our observable features xi to be distributed as a Gaussian, so the mean and variance will be cluster- specific, chosen based on the cluster that point xi is associated with. However, in practice, almost any distribution can be chosen for the observable features. With d-dimensional Gaussian data xi, our model is: zi j π ∼ Mult(π) xi j zi = k ∼ ND(µk; Σk); where π is a point on a K-dimensional simplex, so π 2 RK obeys the following PK properties: k=1 πk = 1 and 8k 2 f1; 2; ::; Kg : πk 2 [0; 1]. The variables π are known as the mixture proportions and the cluster-specific distributions are called th the mixture components. -
START HERE: Instructions Mixtures of Exponential Family
Machine Learning 10-701 Mar 30, 2015 http://alex.smola.org/teaching/10-701-15 due on Apr 20, 2015 Carnegie Mellon University Homework 9 Solutions START HERE: Instructions • Thanks a lot to John A.W.B. Constanzo for providing and allowing to use the latex source files for quick preparation of the HW solution. • The homework is due at 9:00am on April 20, 2015. Anything that is received after that time will not be considered. • Answers to every theory questions will be also submitted electronically on Autolab (PDF: Latex or handwritten and scanned). Make sure you prepare the answers to each question separately. • Collaboration on solving the homework is allowed (after you have thought about the problems on your own). However, when you do collaborate, you should list your collaborators! You might also have gotten some inspiration from resources (books or online etc...). This might be OK only after you have tried to solve the problem, and couldn’t. In such a case, you should cite your resources. • If you do collaborate with someone or use a book or website, you are expected to write up your solution independently. That is, close the book and all of your notes before starting to write up your solution. • Latex source of this homework: http://alex.smola.org/teaching/10-701-15/homework/ hw9_latex.zip. Mixtures of Exponential Family In this problem we will study approximate inference on a general Bayesian Mixture Model. In particular, we will derive both Expectation-Maximization (EM) algorithm and Gibbs Sampling for the mixture model. A typical -
Robust Mixture Modelling Using the T Distribution
Statistics and Computing (2000) 10, 339–348 Robust mixture modelling using the t distribution D. PEEL and G. J. MCLACHLAN Department of Mathematics, University of Queensland, St. Lucia, Queensland 4072, Australia [email protected] Normal mixture models are being increasingly used to model the distributions of a wide variety of random phenomena and to cluster sets of continuous multivariate data. However, for a set of data containing a group or groups of observations with longer than normal tails or atypical observations, the use of normal components may unduly affect the fit of the mixture model. In this paper, we consider a more robust approach by modelling the data by a mixture of t distributions. The use of the ECM algorithm to fit this t mixture model is described and examples of its use are given in the context of clustering multivariate data in the presence of atypical observations in the form of background noise. Keywords: finite mixture models, normal components, multivariate t components, maximum like- lihood, EM algorithm, cluster analysis 1. Introduction tailed alternative to the normal distribution. Hence it provides a more robust approach to the fitting of normal mixture mod- Finite mixtures of distributions have provided a mathematical- els, as observations that are atypical of a component are given based approach to the statistical modelling of a wide variety of reduced weight in the calculation of its parameters. Also, the random phenomena; see, for example, Everitt and Hand (1981), use of t components gives less extreme estimates of the pos- Titterington, Smith and Makov (1985), McLachlan and Basford terior probabilities of component membership of the mixture (1988), Lindsay (1995), and B¨ohning (1999). -
Outlier Identification.Pdf
STATGRAPHICS – Rev. 7/6/2009 Outlier Identification Summary The Outlier Identification procedure is designed to help determine whether or not a sample of n numeric observations contains outliers. By “outlier”, we mean an observation that does not come from the same distribution as the rest of the sample. Both graphical methods and formal statistical tests are included. The procedure will also save a column back to the datasheet identifying the outliers in a form that can be used in the Select field on other data input dialog boxes. Sample StatFolio: outlier.sgp Sample Data: The file bodytemp.sgd file contains data describing the body temperature of a sample of n = 130 people. It was obtained from the Journal of Statistical Education Data Archive (www.amstat.org/publications/jse/jse_data_archive.html) and originally appeared in the Journal of the American Medical Association. The first 20 rows of the file are shown below. Temperature Gender Heart Rate 98.4 Male 84 98.4 Male 82 98.2 Female 65 97.8 Female 71 98 Male 78 97.9 Male 72 99 Female 79 98.5 Male 68 98.8 Female 64 98 Male 67 97.4 Male 78 98.8 Male 78 99.5 Male 75 98 Female 73 100.8 Female 77 97.1 Male 75 98 Male 71 98.7 Female 72 98.9 Male 80 99 Male 75 2009 by StatPoint Technologies, Inc. Outlier Identification - 1 STATGRAPHICS – Rev. 7/6/2009 Data Input The data to be analyzed consist of a single numeric column containing n = 2 or more observations. -
A Machine Learning Approach to Outlier Detection and Imputation of Missing Data1
Ninth IFC Conference on “Are post-crisis statistical initiatives completed?” Basel, 30-31 August 2018 A machine learning approach to outlier detection and imputation of missing data1 Nicola Benatti, European Central Bank 1 This paper was prepared for the meeting. The views expressed are those of the authors and do not necessarily reflect the views of the BIS, the IFC or the central banks and other institutions represented at the meeting. A machine learning approach to outlier detection and imputation of missing data Nicola Benatti In the era of ready-to-go analysis of high-dimensional datasets, data quality is essential for economists to guarantee robust results. Traditional techniques for outlier detection tend to exclude the tails of distributions and ignore the data generation processes of specific datasets. At the same time, multiple imputation of missing values is traditionally an iterative process based on linear estimations, implying the use of simplified data generation models. In this paper I propose the use of common machine learning algorithms (i.e. boosted trees, cross validation and cluster analysis) to determine the data generation models of a firm-level dataset in order to detect outliers and impute missing values. Keywords: machine learning, outlier detection, imputation, firm data JEL classification: C81, C55, C53, D22 Contents A machine learning approach to outlier detection and imputation of missing data ... 1 Introduction .............................................................................................................................................. -
Effects of Outliers with an Outlier
• The mean is a good measure to use to describe data that are close in value. • The median more accurately describes data Effects of Outliers with an outlier. • The mode is a good measure to use when you have categorical data; for example, if each student records his or her favorite color, the color (a category) listed most often is the mode of the data. In the data set below, the value 12 is much less than Additional Example 2: Exploring the Effects of the other values in the set. An extreme value such as Outliers on Measures of Central Tendency this is called an outlier. The data shows Sara’s scores for the last 5 35, 38, 27, 12, 30, 41, 31, 35 math tests: 88, 90, 55, 94, and 89. Identify the outlier in the data set. Then determine how the outlier affects the mean, median, and x mode of the data. x x xx x x x 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40 42 55, 88, 89, 90, 94 outlier 55 1 Additional Example 2 Continued Additional Example 2 Continued With the Outlier Without the Outlier 55, 88, 89, 90, 94 55, 88, 89, 90, 94 outlier 55 mean: median: mode: mean: median: mode: 55+88+89+90+94 = 416 55, 88, 89, 90, 94 88+89+90+94 = 361 88, 89,+ 90, 94 416 5 = 83.2 361 4 = 90.25 2 = 89.5 The mean is 83.2. The median is 89. There is no mode. -
How Significant Is a Boxplot Outlier?
Journal of Statistics Education, Volume 19, Number 2(2011) How Significant Is A Boxplot Outlier? Robert Dawson Saint Mary’s University Journal of Statistics Education Volume 19, Number 2(2011), www.amstat.org/publications/jse/v19n2/dawson.pdf Copyright © 2011 by Robert Dawson all rights reserved. This text may be freely shared among individuals, but it may not be republished in any medium without express written consent from the author and advance notification of the editor. Key Words: Boxplot; Outlier; Significance; Spreadsheet; Simulation. Abstract It is common to consider Tukey’s schematic (“full”) boxplot as an informal test for the existence of outliers. While the procedure is useful, it should be used with caution, as at least 30% of samples from a normally-distributed population of any size will be flagged as containing an outlier, while for small samples (N<10) even extreme outliers indicate little. This fact is most easily seen using a simulation, which ideally students should perform for themselves. The majority of students who learn about boxplots are not familiar with the tools (such as R) that upper-level students might use for such a simulation. This article shows how, with appropriate guidance, a class can use a spreadsheet such as Excel to explore this issue. 1. Introduction Exploratory data analysis suddenly got a lot cooler on February 4, 2009, when a boxplot was featured in Randall Munroe's popular Webcomic xkcd. 1 Journal of Statistics Education, Volume 19, Number 2(2011) Figure 1 “Boyfriend” (Feb. 4 2009, http://xkcd.com/539/) Used by permission of Randall Munroe But is Megan justified in claiming “statistical significance”? We shall explore this intriguing question using Microsoft Excel. -
Lecture 14 Testing for Kurtosis
9/8/2016 CHE384, From Data to Decisions: Measurement, Kurtosis Uncertainty, Analysis, and Modeling • For any distribution, the kurtosis (sometimes Lecture 14 called the excess kurtosis) is defined as Testing for Kurtosis 3 (old notation = ) • For a unimodal, symmetric distribution, Chris A. Mack – a positive kurtosis means “heavy tails” and a more Adjunct Associate Professor peaked center compared to a normal distribution – a negative kurtosis means “light tails” and a more spread center compared to a normal distribution http://www.lithoguru.com/scientist/statistics/ © Chris Mack, 2016Data to Decisions 1 © Chris Mack, 2016Data to Decisions 2 Kurtosis Examples One Impact of Excess Kurtosis • For the Student’s t • For a normal distribution, the sample distribution, the variance will have an expected value of s2, excess kurtosis is and a variance of 6 2 4 1 for DF > 4 ( for DF ≤ 4 the kurtosis is infinite) • For a distribution with excess kurtosis • For a uniform 2 1 1 distribution, 1 2 © Chris Mack, 2016Data to Decisions 3 © Chris Mack, 2016Data to Decisions 4 Sample Kurtosis Sample Kurtosis • For a sample of size n, the sample kurtosis is • An unbiased estimator of the sample excess 1 kurtosis is ∑ ̅ 1 3 3 1 6 1 2 3 ∑ ̅ Standard Error: • For large n, the sampling distribution of 1 24 2 1 approaches Normal with mean 0 and variance 2 1 of 24/n 3 5 • For small samples, this estimator is biased D. N. Joanes and C. A. Gill, “Comparing Measures of Sample Skewness and Kurtosis”, The Statistician, 47(1),183–189 (1998). -
Lecture 16: Mixture Models
Lecture 16: Mixture models Roger Grosse and Nitish Srivastava 1 Learning goals • Know what generative process is assumed in a mixture model, and what sort of data it is intended to model • Be able to perform posterior inference in a mixture model, in particular { compute the posterior distribution over the latent variable { compute the posterior predictive distribution • Be able to learn the parameters of a mixture model using the Expectation-Maximization (E-M) algorithm 2 Unsupervised learning So far in this course, we've focused on supervised learning, where we assumed we had a set of training examples labeled with the correct output of the algorithm. We're going to shift focus now to unsupervised learning, where we don't know the right answer ahead of time. Instead, we have a collection of data, and we want to find interesting patterns in the data. Here are some examples: • The neural probabilistic language model you implemented for Assignment 1 was a good example of unsupervised learning for two reasons: { One of the goals was to model the distribution over sentences, so that you could tell how \good" a sentence is based on its probability. This is unsupervised, since the goal is to model a distribution rather than to predict a target. This distri- bution might be used in the context of a speech recognition system, where you want to combine the evidence (the acoustic signal) with a prior over sentences. { The model learned word embeddings, which you could later analyze and visu- alize. The embeddings weren't given as a supervised signal to the algorithm, i.e. -
Linear Mixture Model Applied to Amazonian Vegetation Classification
Remote Sensing of Environment 87 (2003) 456–469 www.elsevier.com/locate/rse Linear mixture model applied to Amazonian vegetation classification Dengsheng Lua,*, Emilio Morana,b, Mateus Batistellab,c a Center for the Study of Institutions, Population, and Environmental Change (CIPEC) Indiana University, 408 N. Indiana Ave., Bloomington, IN, 47408, USA b Anthropological Center for Training and Research on Global Environmental Change (ACT), Indiana University, Bloomington, IN, USA c Brazilian Agricultural Research Corporation, EMBRAPA Satellite Monitoring Campinas, Sa˜o Paulo, Brazil Received 7 September 2001; received in revised form 11 June 2002; accepted 11 June 2002 Abstract Many research projects require accurate delineation of different secondary succession (SS) stages over large regions/subregions of the Amazon basin. However, the complexity of vegetation stand structure, abundant vegetation species, and the smooth transition between different SS stages make vegetation classification difficult when using traditional approaches such as the maximum likelihood classifier (MLC). Most of the time, classification distinguishes only between forest/non-forest. It has been difficult to accurately distinguish stages of SS. In this paper, a linear mixture model (LMM) approach is applied to classify successional and mature forests using Thematic Mapper (TM) imagery in the Rondoˆnia region of the Brazilian Amazon. Three endmembers (i.e., shade, soil, and green vegetation or GV) were identified based on the image itself and a constrained least-squares solution was used to unmix the image. This study indicates that the LMM approach is a promising method for distinguishing successional and mature forests in the Amazon basin using TM data. It improved vegetation classification accuracy over that of the MLC. -
Graph Laplacian Mixture Model Hermina Petric Maretic and Pascal Frossard
1 Graph Laplacian mixture model Hermina Petric Maretic and Pascal Frossard Abstract—Graph learning methods have recently been receiv- of signals that are an unknown combination of data with ing increasing interest as means to infer structure in datasets. different structures. Namely, we propose a generative model Most of the recent approaches focus on different relationships for data represented as a mixture of signals naturally living on between a graph and data sample distributions, mostly in settings where all available data relate to the same graph. This is, a collection of different graphs. As it is often the case with however, not always the case, as data is often available in mixed data, the separation of these signals into clusters is assumed form, yielding the need for methods that are able to cope with to be unknown. We thus propose an algorithm that will jointly mixture data and learn multiple graphs. We propose a novel cluster the signals and infer multiple graph structures, one for generative model that represents a collection of distinct data each of the clusters. Our method assumes a general signal which naturally live on different graphs. We assume the mapping of data to graphs is not known and investigate the problem of model, and offers a framework for multiple graph inference jointly clustering a set of data and learning a graph for each of that can be directly used with a number of state-of-the- the clusters. Experiments demonstrate promising performance in art network inference algorithms, harnessing their particular data clustering and multiple graph inference, and show desirable benefits.