Supplementary Table 4 Genome-deduced proteins that show significant similarity to both mitochondrial and peroxisomal keto-acyl-CoA thiolase, and predicted as targeted to both mitochondria and peroxisomes

BLASTP score to BLASTP score to Sequence ID Species name mitochondrial enzyme1 peroxisomal enzyme2 HCAG_00780.1 Ajellomyces capsulatus 184 328 HCAG_01596.1 Ajellomyces capsulatus 213 402 ACLA_005780 Aspergillus clavatus 188 369 ACLA_022810 Aspergillus clavatus 187 360 ACLA_050080 Aspergillus clavatus 207 378 AFL2G03590 Aspergillus flavus 201 348 Afu1g12650 Aspergillus fumigatus 201 362 Afu4g10950 Aspergillus fumigatus 210 382 fge1_pg_C_3000623 Aspergillus niger 192 358 AO090012000715 Aspergillus oryzae 201 348 Batrachochytrium BDEG_05651 426 229 dendrobatidis CHG08939.1 Chaetomium globosum 177 310 CIMG_06860 Coccidioides immitis 192 345 AN4009 Emericella nidulans 206 326 CNG00490.1 Filobasidiella neoformans 201 395 FOXG_06200 Fusarium oxysporum 206 380 FVEG_04053 Gibberella moniliformis 206 380 FGSG_09503 Gibberella zeae 203 385 jgi|Trire2|3835 Hypocrea jecorina 181 309 jgi|Trive1|10779 Hypocrea virens 192 335 jgi|Lacbi1|300690 Laccaria bicolor 205 343 jgi|Mycfi1|53449 Mycosphaerella fijiensis 199 331 Mycosphaerella jgi|Mycgr1|68293 207 360 graminicola Mycosphaerella jgi|Mycgr1|86943 205 323 graminicola jgi|Necha2|43894 Nectria haematococca 197 344 jgi|Necha2|58500 Nectria haematococca 181 338 NFIA_012900 Neosartorya fischeri 197 358 NFIA_025050 Neosartorya fischeri 203 384 NFIA_104910 Neosartorya fischeri 211 382 SNU04151.1 Phaeosphaeria nodorum 211 341 SNU06131.1 Phaeosphaeria nodorum 146 273 Phanerochaete jgi|Phchr1|6449 199 355 chrysosporium Phanerochaete jgi|Phchr1|124872 214 341 chrysosporium jgi|Pospl1|87630 Postia placenta 132 261 jgi|Pospl1|90284 Postia placenta 134 264 PGTG_00588 Puccinia graminis 395 216 PGTG_09502 Puccinia graminis 213 351 PGTG_11395 Puccinia graminis 182 355 SS1G_00464.1 Sclerotinia sclerotiorum 202 353 jgi|Sporo1|13250 Sporobolomyces roseus 199 301 jgi|Sporo1|16358 Sporobolomyces roseus 389 220 UREG_03622.1 Uncinocarpus reesii 199 337 UM03298.1 Ustilago maydis 420 219

1 BLASTP search against mitochondrial 3-keto-acyl-CoA thiolase from Rattus norvegicus (P13437) 2 BLASTP search against two enzymes, peroxisomal 3-keto-acyl-CoA thiolase A (P21775) and B (P07871) from Rattus norvegicus. The higher score of the two alignments is reported 3 mit: mitochondria; per: peroxisomes