Kouřil R, Ilík P, Nauš J and Schoefs B (1999) on the Limits of Applicability Of

1) Kouřil R, Ilík P, Nauš J and Schoefs B (1999) On the limits of applicability of spectrophotometric and spectrofluorimetric methods for the determination of chlorophyll a/b ratio. Photosynth Res 62: 107-116. 2) Ilík P, Kouřil R, Fiala J, Nauš J and Vácha F (2000) Spectral characterization of chlorophyll fluorescence in barley leaves during linear heating - Analysis of high- temperature fluorescence rise around 60 degrees C. J Photochem Photobiol B: Biol 59: 103-114. 3) Kouřil R, Ilík P, Tomek P, Nauš J and Poulíčková A (2001) Chlorophyll fluorescence temperature curve on Klebsormidium flaccidum cultivated at different temperature regimes. J Plant Physiol 158: 1131-1136. 4) Hlaváčkov V, Špundová M, Nauš J, Navrátil M, Kouřil R and Kaňa R (2002) Mechanical wounding caused by inoculation influences the photosynthetic response of Nicotiana benthamiana plants to plum pox potyvirus. Photosynthetica 40: 269-277. 5) Ilík P, Kouřil R, Kruk J, Mysliwa-Kurdziel B, Popelková H, Strzalka K and Nauš J (2003) Origin of chlorophyll fluorescence in plants at 55-75 degrees C. Photochem Photobiol 77: 68-76. 6) Kouřil R, Yeremenko N, D'Haene S, Yakushevska AE, Keegstra W, Matthijs HCP, Dekker JP and Boekema EJ (2003) Photosystem I trimers from Synechocystis PCC 6803 lacking the PsaF and PsaJ subunits bind an IsiA ring of 17 units. Biochim Biophys Acta 1607: 1-4. 7) Kouřil R, Lazár D, Lee H, Jo J and Nauš J (2003) Moderately elevated temperature eliminates resistance of rice plants with enhanced expression of glutathione reductase to intensive photooxidative stress. Photosynthetica 41: 571-578. 8) Kouřil R, Lazár D, Ilík P, Skotnica J, Krchňák P and Nauš J (2004) High-temperature induced chlorophyll fluorescence rise in plants at 40-50 degrees C: experimental and theoretical approach. Photosynth Res 81: 49-66. 9) Yeremenko N, Kouřil R, Ihalainen JA, D'Haene S, van Oosterwijk N, Andrizhiyevskaya EG, Keegstra W, Dekker HL, Hagemann M, Boekema EJ, Matthijs HCP and Dekker JP (2004) Supramolecular organization and dual function of the IsiA chlorophyll-binding protein in cyanobacteria. Biochemistry 43:10308-10313. 10) Kouřil R, Yeremenko N, D'Haene S, Oostergetel GT, Matthijs HCP, Dekker JP and Boekema EJ (2005) Supercomplexes of IsiA and photosystem I in a mutant lacking subunit PsaL. Biochim Biophys Acta 1706: 262-266. 11) Arteni AA, Nowaczyk M, Lax J, Kouřil R, Rögner M and Boekema EJ (2005) Single particle electron microscopy in combination with mass spectrometry to investigate novel complexes of membrane proteins. J Struct Biol 149: 325-331. 12) Kouřil R, Arteni AA, Lax J, Yeremenko N, D'Haene S, Rögner M, Matthijs HCP, Dekker JP and Boekema EJ (2005) Structure and functional role of supercomplexes of IsiA and Photosystem I in cyanobacterial photosynthesis. FEBS Lett 579: 3253-3257. 13) Kouřil R, Zygadlo A, Arteni AA, de Wit C, Dekker JP, Jensen PE, Scheller HV and Boekema EJ (2005) Structural characterization of a complex of photosystem I and light- harvesting complex II of Arabidopsis thaliana. Biochemistry 44: 10935-10940. 14) Kouřil R, van Oosterwijk N, Yakushevska AE and Boekema EJ (2005) Photosystem I: a search for green plant trimers. Photochem Photobiol Sci 4: 1091-1094.

1 15) Boekema EJ, Kouřil R, Dekker JP, Jensen PE (2006) Association of photosystem I and light-harvesting complex II during state transitions. In: Photosystem I – The light-driven plastocyanin: ferredoxin oxidoreductase. Series: Advances in photosynthesis and respiration, Vol 24, pp 41-46. Golbeck JH (ed.), Springer, The Netherlands. 16) Heinemeyer J, Braun HP, Boekema EJ and Kouřil R (2007) A structural model of the cytochrome reductase / oxidase supercomplex from yeast mitochondria. J Biol Chem 282: 12240-12248. 17) Kereïche S, Kouřil R, Oostergetel GT, Fusetti F, Boekema EJ, Doust AB, van der Weij- de Wit CD, Dekker JP (2008) Association of chlorophyll a/c2 complexes to photossystem I and photosystem II in the cryptophyte Rhodomonas CS24. Biochim Biophys Acta 1777: 1122-1128. 18) Bultema JB, Braun HP, Boekema EJ, Kouřil R (2009) Megacomplex organization of the oxidative phosphorylation system by structural analysis of respiratory supercomplexes from potato. Biochim Biophys Acta 1787: 60-67. 19) Braun HP, Sunderhaus S, Boekema EJ, Kouřil R (2009) Purification of the cytochrome c reductase/cytochrome c oxidase supercomplex of yeast mitochondria. Methods Enzymol 456: 183-190. 20) Boekema EJ, Folea M, Kouřil R (2009) Single particle electron microscopy. Photosynth Res 102: 189-196. 21) Caffarri S, Kouřil R, Kereiche S, Boekema EJ, Croce R (2009) Functional architecture of higher plant photosystem II supercomplexes. EMBO J 28: 3052-3063. 22) Kereïche S, Kiss AZ, Kouřil R, Boekema EJ, Horton P (2010) The PsbS protein controls the macro-organisation of photosystem II complexes in the grana membranes of higher plant chloroplasts. FEBS Lett: 584: 759-764. 23) Dudkina NV, Kouřil R, Peters K, Braun HP, Boekema EJ (2010) Structure and function of mitochondrial supercomplexes. Biochim Biophys Acta: 1797: 664-670. 24) Dudkina NV, Kouřil R, Bultema JB, Boekema EJ (2010) Imaging of organelles by electron microscopy reveals protein-protein interactions in mitochondria and chloroplasts. FEBS Lett 584: 2510-2515. 25) Chauhan D, Folea IM, Jolley CC, Kouřil R, Lubner CE, Lin S, Kolber D, Wolfe-Simon F, Golbeck JH, Boekema EJ, Fromme P (2011) A novel photosynthetic strategy for adaptation to low-iron aquatic environments. Biochemistry 50: 686-692. 26) Thangaraj B, Jolley CC, Sarrou I, Bultema JB, Greyslak J, Whitelegge JP, Lin S, Kouřil R, Subramanyam R, Boekema EJ, Fromme P (2011) Efficient light harvesting in a dark, hot, acidic environment: the structure and function of PSI-LHCI from Galdieria sulphuraria. Biophys J 100: 135-143. 27) Kouřil R, Oostergetel GT, Boekema EJ (2011) Fine structure of granal thylakoid membrane organization using cryo electron tomography. Biochim Biophys Acta 1807: 368-374. 28) de Bianchi S, Betterle N, Kouřil R, Cazzaniga S, Boekema EJ, Bassi R, Dall´Osto L (2011) Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection. Plant Cell 23: 2659- 2679.

2 29) Kouřil R, Dekker JP, Boekema EJ (2012) Supramolecular organization of photosystem II in green plants. Biochim Biophys Acta 1817: 2-12.