Supplementary Table 1. Genbank Accession Numbers, Geographic Source and Plant Host For

Supplementary Table 1. GenBank accession numbers, geographic source and plant host for taxa included in phylogenetic analyses.

Taxon strain/isolate Plant host Locality GenBank Botryosphaeria berengeriana NW299 ? China EU520177 Botryosphaeria berengeriana XZ05 Pinus massoniana (root) China FJ441665 Botryosphaeria berengeriana LWDS01 pear (mycelium) China HM013822 f.sp. pyricola Botryosphaeria corticis CBS119048 Vaccinium corymbosum USA DQ299246 Botryosphaeria corticis ATCC 22928 Vaccinium sp. USA DQ299248 Botryosphaeria corticis 96-125 blueberry USA AF243397 Botryosphaeria corticola CBS 112545 Quercus sp. Portugul AY259089 Botryosphaeria dothidea MUCC501 Eucalyptus marginata AU EF591916 Botryosphaeria dothidea WAC12404 Corymbia calophylla AU AY744378 Botryosphaeria dothidea CMW7999 Ostrya sp. Switz. AY236948 Botryosphaeria dothidea DAR78224 Vitis vinifera AU EU137878 Botryosphaeria dothidea UCD1672Yo Vitis vinifera USA DQ233603 Botryosphaeria dothidea CAP234 Olea europaea Italy EF638749 Botryosphaeria dothidea CBS 116741 Olea europae Greece AY640254 Botryosphaeria dothidea SDAU07150 pomegranate China EU600291 Botryosphaeria dothidea CMW8000 Prunus sp. Switz. AY236949 Botryosphaeria dothidea UY339 Eucalyptus sp. Uruguay EU080918 Botryosphaeria dothidea sdau07-61 apple fruit China GQ855782 Botryosphaeria dothidea sdau07-139 apple fruit China GQ870284 Botryosphaeria dothidea BB174-1 Vitis vinifera AU HQ392698 Botryosphaeria dothidea MUCC502 Acacia rostellifera AU EF591917 Botryosphaeria dothidea MUCC503 Acacia cochlearis AU EF591918 Botryosphaeria dothidea MUCC504 Acacia rostellifera AU EF591919 Botryosphaeria dothidea MUCC148 Eucalyptus dunnii AU EU675670 Botryosphaeria dothidea CSU-07-WP-TS16 Vitis vinifera cv. Chardonnay AU FJ176570 Botryosphaeria dothidea BD001 HQ231407 Botryosphaeria dothidea sdau07-139 apple fruit China GQ870284 Botryosphaeria dothidea Rhoiscissus digitata (Asphond.gall) SAfr EF614916 Botryosphaeria dothidea Acacia mearnsii (Asphond.gall) AU EF614930 Botryosphaeria dothidea Acacia mearnsii (Asphond.gall) AU EF614929 Botryosphaeria dothidea Asphondylia galls AU EF614928 Botryosphaeria dothidea Asphondylia (gall midge) AU EF614927 mycangium Botryosphaeria dothidea Billardiera variifolia (Asphond.gall) AU EF614926 Botryosphaeria dothidea Acacia cyclops (Asphond.gall) AU EF614925 Botryosphaeria dothidea Acacia mearnsii (Asphond.gall) AU EF614924 Botryosphaeria dothidea Acacia irrorata (Asphond.gall) AU EF614923 Botryosphaeria dothidea Hybanthus floribunda AU EF614922 (Asphond.gall) Botryosphaeria dothidea Dodonaea viscosa (Asphond.gall) AU EF614921 Botryosphaeria dothidea Grewia occidentalis (Asphond.gall) SAfr EF614920 Botryosphaeria dothidea Acacia karroo (Asphond.gall) SAfr EF614919 Botryosphaeria dothidea Osiris compressa (Asphond.gall) SAfr EF614918 Botryosphaeria dothidea Virgillea oroboides (Asphond.gall) SAfr EF614917 Botryosphaeria dothidea CP291D A. floriformis larval chamber on S. AU JN983417 quinqueflora Botryosphaeria dothidea CP293D A. floriformis larval chamber on AU JN983418 S.quinqueflora Botryosphaeria dothidea CP294D A. floriformis larval chamber on AU JN983419 S.quinqueflora Botryosphaeria dothidea CP43D A. floriformis larval chamber on AU JN983420 S.quinqueflora Botryosphaeria dothidea CP41D A. floriformis larval chamber on AU JN983421 S.quinqueflora Botryosphaeria dothidea CP44D A. floriformis larval chamber on AU JN983422 S.quinqueflora Botryosphaeria dothidea mtl2044 A. floriformis larval chamber on AU JN983424 S.quinqueflora Botryosphaeria dothidea mtl2045 A. floriformis larval chamber on AU JN983425 S.quinqueflora Botryosphaeria dothidea mtl2047 A. floriformis larval chamber on AU JN983426 S.quinqueflora Botryosphaeria dothidea mtl2048 A. floriformis larval chamber on AU JN983427 S.quinqueflora Botryosphaeria dothidea mtl2050 A. floriformis larval chamber on AU JN983428 S.quinqueflora Botryosphaeria dothidea mtl2052 A. floriformis larval chamber on AU JN983429 S.quinqueflora Botryosphaeria dothidea mtl2053A A. tecticorniae larval chamber on AU JN983430 T. arbuscula Botryosphaeria dothidea mtl2054 A. tecticorniae larval chamber on AU JN983431 T.arbuscula Botryosphaeria dothidea mtl2055 A. peelei larval chamber on AU JN983432 T.arbuscula Botryosphaeria dothidea mtl2058 A. peelei larval chamber on AU JN983433 T.arbuscula Botryosphaeria dothidea gf758759 A. sarcocorniae larval chamber on AU JN983434 S.quinqueflora Botryosphaeria dothidea gf762763 A. sarcocorniae larval chamber on AU JN983435 S.quinqueflora Botryosphaeria dothidea gf764765 A. sarcocorniae larval chamber on AU JN983436 S.quinqueflora Botryosphaeria dothidea MTL1204 A. sarcocorniae larval chamber on AU JN983423 S.quinqueflora Botryosphaeria eucalypticola CMW6217 Eucalyptus rossi AU AY615143 Botryosphaeria mamane 97-59 AF246930 Botryosphaeria obtusa CMW7774 Ribes sp. USA AY236953 Botryosphaeria parva WAC12397 Eucalyptus pellita AU AY744370 Botryosphaeria parva CMW15950 Eucalyptus globulus AU DQ093193 Botryosphaeria parva CMW9081 Populus nigra NZ AY236943 Botryosphaeria populi CBS 110300 Populus nigra Portugal AY640253 Botryosphaeria protearum MUCC497 Santalum acuminatum AU EF591912 Botryosphaeria rhodina CMW9074 Pinus Mexico DQ103533 Botryosphaeria ribis WAC12396 Eucalyptus grandis AU AY744369 Botryosphaeria ribis CMW7773 Ribes sp. USA AY236936 Botryosphaeria sarmentorum o30.1 Fraxinus excelsior Sweden FJ228180 Botryosphaeria stevensii 94-6 USA AF243407 Botryosphaeria tsugae 96-174 USA AF243405 Botryosphaeria sp. B1113 mango fruit Taiwan GU453691 Dichomera eucalypti CMW15953 Eucalyptus diversicolor AU DQ093195 Dichomera eucalypti WAC12402 Eucalyptus camaldulensis AU AY744373 Dichomera saubinettii CBS990_70 Quercus sp Netherlnd AY744379 Dichomera versiformis WAC15208 Eucalyptus camaldulensis AU AY744376 Diplodia africana STE-U 6289 Prunus SAfr. EF445345 Diplodia pinea STE-U 5812 Prunus SAfr. EF445342 Diplodia porosum STE-U 5132 Vitis vinifera SAfr. AY343379 Diplodia seriata DAR79133 Vitis vinifera AU FJ176562 Dothiorella moneti MUCC507 Acacia rostellifera AU EF591922 Dothiorella santali MUCC508 Santalum acuminatum AU EF591923 Fungal sp. CMU36 Thailand HM473074 Fungal sp. S6 ZLY-2010 Oryza granulata China GU903279 Fungal endophyte sp. g59 Cinnamomum camphora (leaf) China HM537046 Fungal endophyte EMS10 Pinus tabulaeformis China AY546029 Guignardia alliacea MUCC0155 Allium fistulosum Japan AB454327 Guignardia sawadae MUCC0066 Cryptomeria japonica Japan AB454292 Lasiodiplodia gilanensis C2 Taxus chinensis var. mairei China JN198398 Lasiodiplodia rubropurpurea WAC12538 Eucalyptus grandis AU DQ103556 Lasiodiplodia margaritacea CBS122065 Adansonia gibbosa AU EU144051 Macrophomina phaseolina KB-8 India DQ359744 Mycosphaerella heimii Eucalyptus sp Laos EU882121 Mycosphaerella parva AMR250 AU AY509781 Neofusicoccum australe WAC12400 Eucalyptus marginata AU AY744375 Neofusicoccum australe MUCC495 Santalum acuminatum AU EF591910 Neofusicoccum luteum BB175-2 Vitis vinifera AU HQ392719 Neofusicoccum lutea KJ 93.52 AF027745 Neofusicoccum mangiferum CMW7024 Mangifera indica AU AY615185 Neofusicoccum macroclavatum WAC12444 Eucalyptus globulus AU DQ093196 Neofusicoccum pennatisporum MUCC510 Allocasuarina fraseriana AU EF591925 Neofusicoccum protearum STE-U 4368 proteaceae SAfr. AF452542 Neoscytalidium dimidiatum DISTEF-ND1 Citrus Italy GQ330902 Neoscytalidium dimidiatum DISTEF-ND2 Citrus Italy GQ330903 Phaeobotryosphaeria citrigena ICMP 16818 NZ EU673329 Phaeobotryosphaeria visci CBS 122527 Ukraine EU673327 Sphaeropsis sapinea SS31 China HM467681 Teratosphaeria keanei BRIP525933b Eucalyptus globulus x Eucalyptus AU HM012878 camaldulensis Cladosporium Cladosporium cladosporioides F12 China HQ380766 Cladosporium cucumerinum CBS 171.52 Cucumis Netherlnd HM148072 Cladosporium herbarum wb221 Austria AF455517 Cladosporium macrocarpum CPC 12759 Spinacea USA EF679380 Cladosporium magnusianum ATCC 200946 USA AF393712 Cladosporium tenellum CPC 12053 EF679401 Cladosporium tenellum CPC 11813 EF679399 Cladosporium tenellum mcp1920 Cultured from S. quinqeflora AU JN983453 articles Davidiella dianthi ATCC 56129 USA AF393698 Davidiella macrospora CBS 138.40 Iris USA AF297231 Davidiella tassiana cla063 Graphiopsis chlorocephala CBS 100405 Paeonia sp. NZ EU009456 Mycosphaerella acaciigena CPC 13350 Eucalyptus camaldulensis X E. Venezuel EF394823 urophylla a Mycosphaerella grandis TC 0.41 Eucalyptus globulus AU DQ665663 Mycosphaerella macrospora Myma 1 Iris USA AF297231 Rachicladosporium luculiae CPC 11407 Luculia sp. NZ EU040237 Teratosphaeria bellula STE-U 1321 Proteaceae SAfr. AY260092 Verrucocladosporium dirinae CBS 112794 Dirina massiliensis UK EU040244 Fusarium Calonectria australiensis CBS 112954 GQ280552 Calonectria colhounii CBS 293.79 GQ280565 Calonectria indusiata CBS 114684 GQ280659 Fusarium acuminatum NRRL 54216 USA HM068324 Fusarium chlamydosporum SGLAf44 Taxus Mexico EU715615 Fusarium equiseti H02-765S sorghum USA EU595566 Fusarium incarnatum NJM 0177 Penaeus monodon Vietnam AY633745 Fusarium oxysporum FO-09 China AY928416 Fusarium oxysporum 13 sugar beet China EU594568 Fusarium solani TS08-95-3 Larix China AB470848 Fusarium sporotrichioides LF8 China HM805048 Fusarium tricinctum T06 China FJ459974 Fusarium sp. N53 cheese Italy GQ169492 Fusarium sp. K23 China EU236705 Fusarium sp. NRRL 45998 USA GQ505762 Fusarium sp. MS6p50-29 HQ630976 Fusarium sp. MOD-13 EU589150 Fusarium sp. mcp0708 Cultured from S. quinqeflora gall AU JN983445 Fusarium mcp0910 Cultured from S. quinqeflora gall AU JN983446 Fusarium mcp1112 Cultured from S. quinqeflora AU JN983447 articles Fusarium MCP13E09 Cultured from S. quinqeflora AU JN983448 articles Fusarium mcp1516 Cultured from S. quinqeflora AU JN983449 articles Fusarium mcp1718 Cultured from S. quinqeflora AU JN983450 articles Fusarium mcp2324 Cultured from S. quinqeflora gall AU JN983451 Fusarium mcp2930 Cultured from S. quinqeflora AU JN983452 articles Gibberella avenacea FA11 Canada EU255801 Gibberella avenacea OTU140 Canada GU934530 Gibberella pulicaris xsd08118 Poplar China FJ481029 Gibberella sp. FPGLXJ02 Fritillaria China FJ196601 Hypocrea koningii 16-M-1 soil Vietnam EU076928 Metarhizium anisopliae xsd08103 mushroom China FJ481014 Physa globuliferum China FJ418873 Uncultured soil fungus clone 167-32 USA DQ421022 Uncultured soil fungus clone 205-35 USA DQ421025 Paraconiothyrium Lophiostoma arundinis CBS 621.86 Germany AJ496633 Paraconiothyrium variable mcp0102 Cultured from S. quinqeflora gall AU JN983440 Paraconiothyrium variable mcp020 Cultured from S. quinqeflora AU JN983441 articles Paraconiothyrium variabile FR668020 Paraphaeosphaeria pilleata USA AF250821 Paraphaeosphaeria michotii USA AF250817 Paraconiothyrium variabile STE-U 5848 SAfr. EU295645 Camarosporium brabeji CBS:123026 Protea sp. SAfr. EU552105 Coniothyrium fuckelii 09-005 S. Korea JN017200 Coniothyrium wernsdorffiae 24L-217-Mexico Rosa sp. Mexico AY904058 Paraconiothyrium africanum STE-U 6316 SAfr. EU295650 Paraconiothyrium brasiliense STE-U 6301 SAfr. EU295638 Coniothyrium minitans CBS 859-71 UK AJ293810 Paraconiothyrium sporulosum WL-1 water Japan AB303549 Paraconiothyrium variabile STE-U 6314 SAfr. EU295643 Penicillium/Exophiala Aspergillus arenarius NRRL 5012 USA EU021615 Aspergillus granulosus NRRL 1932 USA EF652430 Byssochlamys fulva T152 Thailand AY753341 Chaetothyriales sp. IMI 401915 AB434914 Cladophialophora minutissima UAMH 10711 bryophyta Canada EF016385 Cladophialophora modesta CBS 985.96 GU225939 Coccodinium bartschii CPC 13861 Canada EU019265 Cyphellophora hylomeconis CBS 113311 Hylomecon vernalis Korea EU035415 Cyphellophora eugeniae CBS 124105 Eugenia uniflora Brasil FJ839617 Emericella fruticulosa NRRL 4903 USA EF652483 Exophiala mesophila CBS 402.95 Germany GU225941 Exophiala salmonis CBS 157.67 Belgium AF050274 Exophiala eucalyptorum CPC 11261 Eucalyptus NZ EU035417 Exophilia sp G21L12081209 Cultured from S. quinqeflora AU JN983437 articles Penicillium adametzioides 432 Spain DQ681325 Penicillium camemberti China EU497941 Penicillium glabrum STE-U 6577 Apple SAfr. FJ491804 Penicillium glabrum 909 Spain DQ681321 Penicillium purpurescens NRRL 720 USA AF033408 Penicillium spinulosum CCF3823 soil Czech FJ430767 Penicillium thomii IUVV D7P3-333 grapes France FR670338 Penicillium thomii FRR 2077 AY373934 Penicillium sp mcp2526 Cultured from S. quinqeflora AU JN983438 articles Penicillium sp mcp2728 Cultured from S. quinqeflora gall AU JN983439 Uncultured fungus clone IVS3-27 EU516888 Pestalotiopsis Bartalinia pondoensis CMW:31067 SAfr. GU291796 Discosia pini MAFF 410149 Pinus densiflora Japan AB594776 Discostroma stoneae NBRC 32690 Japan AB594797 Discostroma tricellulare MAFF237482 Rhododendron indicum Japan AF377285 Discostroma fuscellum 10071 Rosa sp. Canada AF377284 Pestalosphaeria hansenii ATCC48245 Pinus carribaea PNG AF377290 Pestalotia lambertiae PSHI2004Endo86 Neodypsis decaryi Jum China DQ813422 Pestalotia rhododendri ATCC24306 Rhododendron Italy AF377294 Pestalotiopsis adusta ICMP 5434 China AF409955 Pestalotiopsis bicilia BRIP 25718 AF409973 Pestalotiopsis calabae MAFF 237935 Cocos nucifera Japan AB491977 Pestalotiopsis disseminata HKUCC 255 China AF409976 Pestalotiopsis microspora T62 China FJ459945 Pestalotiopsis neglecta EY6D China EF055208 Pestalotiopsis olivacea PSHI2002Endo839 Podocarpus nagi China AY681488 Pestalotiopsis uvicola BRIP 25613 China AF409974 Pestalotiopsis sp. 3T29AA tick USA FJ861448 Pestalotiopsis sp mcp0304 Cultured from S. quinqeflora AU JN983442 articles Pestalotiopsis sp mcp2122 Cultured from S. quinqeflora gall AU JN983444 Pestalotiopsis sp mcp0506 Cultured from S. quinqeflora AU JN983443 articles Truncatella angustata ATCC96024 Prunus avium USA AF377300