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Evolution and Phylogenetic Application of the MC1R Gene in the Cobitoidea (Teleostei: Cypriniformes)
ZOOLOGICAL RESEARCH Evolution and phylogenetic application of the MC1R gene in the Cobitoidea (Teleostei: Cypriniformes) Qiong-Ying TANG1,*, Li-Xia SHI1,2, Fei LIU1, Dan YU1, Huan-Zhang LIU1,* 1 The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 2 University of Chinese Academy of Sciences, Beijing 100049, China ABSTRACT INTRODUCTION Fish of the superfamily Cobitoidea sensu stricto (namely loaches) exhibit extremely high diversity of The superfamily Cobitoidea is a group of small- to medium- color patterns, but so far little is known about their sized benthic fish, composed of approximately 28% of species evolutionary mechanism. Melanocortin 1 receptor of the order Cypriniformes, which is the largest group of gene (MC1R) plays an important role during the freshwater fish in the world (Nelson et al., 2016). Depending on synthesis of melanin and formation of animal body different authors, Cobitoidea includes variable families. Bohlen color patterns. In this study, we amplified and sequenced the partial MC1R gene for 44 loach & Šlechtová (2009) and Chen et al. (2009) congruently individuals representing 31 species of four families. recognized the genus Ellopostoma as a distinct new family Phylogenetic analyses yielded a topology congruent Ellopostomatidae, and proposed that Cobitoidea is composed with previous studies using multiple nuclear loci, of eight families (Catostomidae, Gyrinocheilidae, Botiidae, showing that each of the four families was Vaillantellidae, Cobitidae, Ellopostomatidae, Nemacheilidae and monophyletic with sister relationships of Botiidae+ Balitoridae). Kottelat (2012) raised genera Serpenticobitis and (Cobitidae+(Balitoridae+Nemacheilidae)). Gene Barbucca to family rank, and established Serpenticobitidae and evolutionary analyses indicated that MC1R in Barbuccidae. -
PHYLOGENY and ZOOGEOGRAPHY of the SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES)
PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES) Author(s) SAWADA, Yukio Citation MEMOIRS OF THE FACULTY OF FISHERIES HOKKAIDO UNIVERSITY, 28(2), 65-223 Issue Date 1982-03 Doc URL http://hdl.handle.net/2115/21871 Type bulletin (article) File Information 28(2)_P65-223.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, CYPRINIFORMES) By Yukio SAWADA Laboratory of Marine Zoology, Faculty of Fisheries, Bokkaido University Contents page I. Introduction .......................................................... 65 II. Materials and Methods ............... • • . • . • . • • . • . 67 m. Acknowledgements...................................................... 70 IV. Methodology ....................................•....•.........•••.... 71 1. Systematic methodology . • • . • • . • • • . 71 1) The determinlttion of polarity in the morphocline . • . 72 2) The elimination of convergence and parallelism from phylogeny ........ 76 2. Zoogeographical methodology . 76 V. Comparative Osteology and Discussion 1. Cranium.............................................................. 78 2. Mandibular arch ...................................................... 101 3. Hyoid arch .......................................................... 108 4. Branchial apparatus ...................................•..••......••.. 113 5. Suspensorium.......................................................... 120 6. Pectoral -
Italian Journal of Zoology Surface Ultrastructure of the Olfactory
This article was downloaded by: [Institute of Zoology] On: 13 December 2013, At: 23:59 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Italian Journal of Zoology Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/tizo20 Surface ultrastructure of the olfactory epithelium of loach fish, Triplophysa dalaica (Kessler, 1876) (Cypriniformes: Balitoridae: Nemacheilinae) B. Waryani a b c , R. Dai a , Y. Zhao b , C. Zhang b & A. R. Abbasi c a School of Life Sciences, Beijing Institute of Technology b Key Laboratory of Zoological Systematic and Evolution , Chinese Academy of Sciences c Department of Fresh Water Biology and Fisheries , University of Sindh Jamshoro , Pakistan Published online: 20 Mar 2013. To cite this article: B. Waryani , R. Dai , Y. Zhao , C. Zhang & A. R. Abbasi (2013) Surface ultrastructure of the olfactory epithelium of loach fish, Triplophysa dalaica (Kessler, 1876) (Cypriniformes: Balitoridae: Nemacheilinae), Italian Journal of Zoology, 80:2, 195-203, DOI: 10.1080/11250003.2013.771711 To link to this article: http://dx.doi.org/10.1080/11250003.2013.771711 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Any opinions and views expressed in this publication are the opinions and views of the authors, and are not the views of or endorsed by Taylor & Francis. -
Zootaxa,A Brief Review of Triplophysa (Cypriniformes
Zootaxa 1605: 47–58 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) A brief review of Triplophysa (Cypriniformes: Balitoridae) species from the Tarim Basin in Xinjiang, China, with description of a new species JINLU LI 1, 3, NAIFA LIU 1 & JUNXING YANG 2,4 1School of Life Sciences, Lanzhou University, Lanzhou 730000, PR China; Email: [email protected] 2Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, PR China. Email: [email protected] 3Falculty of Animal Science, Gansu Agricultural University, Lanzhou 730070, PR China 4Corresponding author Abstract Recent fieldwork allows a revision of the loaches of the genus Triplophysa inhabiting the Tarim Basin in Xinjiang, China. Eleven species were previously recorded. T. stewarti is a new record. Triplophysa papilloso-labiatus should be regarded as a valid species name. Triplophysa laterimaculata sp. n. was collected from the Kezile River, a tributary of the Tarim River, Kashigar City, Xinjiang on August 22, 2004. The new species can be distinguished from its congeners by the following combination of the characters: body compressed posteriorly; origin of dorsal fin closer to caudal base than to snout tip; pelvic fin insertion below 2nd–3rd branched dorsal rays, fins extending beyond anus or nearly reaching anal fin origin; caudal fin slightly emarginate; body scaleless; lateral line complete; lips thick with strong furrows and papillae remarkable at mouth angle; anterior margin of lower lip covering anterior margin of lower jaw; intestine with 2 coils; free posterior portion of air bladder nearly equal to eye diameter, connecting to anterior encapsulated portion with long tube. -
Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes
GBE Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes Ying Wang1,2, Liandong Yang1,2, Kun Zhou3, Yanping Zhang4, Zhaobin Song5, and Shunping He1,* 1The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China 2University of the Chinese Academy of Sciences, Beijing, China 3Hubei Key Laboratory of Genetic Regulation and Integrative Biology, College of Life Science, Central China Normal University, Wuhan, China 4Gansu Key Laboratory of Cold Water Fishes Germplasm Resources and Genetics Breeding, Gansu Fishers Research Institute, Lanzhou, China 5Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, Chengdu, China *Corresponding author: E-mail: [email protected]. Accepted: October 5, 2015 Data deposition: This project has been deposited at the National Center for Biotechnology Information (NCBI) Sequence Read Archive database under the accession SRR1946837 for Triplophysa siluroides and SRR1948020 for Triplophysa scleroptera. Abstract Triplophysa fishes are the primary component of the fish fauna on the Tibetan Plateau and are well adapted to the high-altitude environment. Despite the importance of Triplophysa fishes on the plateau, the genetic mechanisms of the adaptations of these fishes to this high-altitude environment remain poorly understood. In this study, we generated the transcriptome sequences for three Triplophysa fishes, that is, Triplophysa -
FAMILY Nemacheilidae Regan, 1911
FAMILY Nemacheilidae Regan, 1911 - stone loaches [=Nemachilinae, Adiposiidae, Lefuini, Yunnanilini, Triplophysini] GENUS Aborichthys Chaudhuri, 1913 - hillstream loaches Species Aborichthys boutanensis (McClelland, 1842) - Bolan hillstream loach [=kempi] Species Aborichthys cataracta Arunachalam et al., 2014 - Arunachal hillstream loach Species Aborichthys elongatus Hora, 1921 - Reang hillstream loach Species Aborichthys garoensis Hora, 1925 - Tura hillstream loach Species Aborichthys kempi Chaudhuri, 1913 - Egar hillstream loach Species Aborichthys tikaderi Barman, 1985 - Namdapha hillstream loach Species Aborichthys verticauda Arunchalam et al., 2014 - Ranga hillstream loach Species Aborichthys waikhomi Kosygin, 2012 - Bulbulia stone loach GENUS Acanthocobitis Peters, 1861 - loaches Species Acanthocobitis pavonacea (McClelland, 1839) - pavonacea loach [=longipinnis] GENUS Afronemacheilus Golubtsov & Prokofiev, in Prokofiev, 2009 - stone loaches Species Afronemacheilus abyssinicus (Boulenger, 1902) - Bahardar stone loach Species Afronemacheilus kaffa Prokofiev & Golubtsov, 2013 - kaffa stone loach GENUS Barbatula Linck, 1790 - stone loaches [=Cobites, Orthrias] Species Barbatula altayensis Zhu, 1992 - Kelang stone loach Species Barbatula barbatula (Linnaeus, 1758) - stone loach [=anglicana, blackiana, caucasicus, erythrinna, fuerstenbergii, furstenbergii, hispanica B, hispanica L, markakulensis, parisiensis, taurica, pictava, pironae, vardarensis, variabilis] Species Barbatula conilobus Prokofiev, 2016 - Bogd loach Species Barbatula dgebuadzei -
Homatula Wuliangensis (Teleostei: Nemacheilidae), a New Loach from Yunnan, China
Zootaxa 3586: 313–318 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:A13527B5-B516-4AFC-AF94-0464ABECDA31 Homatula wuliangensis (Teleostei: Nemacheilidae), a new loach from Yunnan, China RUI MIN, JUN-XING YANG* & XIAO-YONG CHEN* State key laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China *Corresponding authors. Current address: Kunming Institute of Zoology, Chinese Academy of Sciences, 32 Jiao Chang Dong Road, Kunming, Yunnan, China E-mail: [email protected], [email protected]. Abstract A new species of Homatula, Homatula wuliangensis, is described from the Lancang River of the Wuliang Mountain, Pu- Er City, Jingdong County, Yunnan Province, China. Homatula wuliangensis sp. nov. is readily distinguished from other species of Homatula by the combination of several morphological characters, including a long upper lobe of the caudal fin relative to the lower lobe, high and long dorsal adipose crest, series of 22–26 very closely aligned body markings, body scaled, and 41–42 vertebrae. In addition, H. wuliangensis differs from the similar species H. anguillioides in having short- er barbels, spots on the caudal fin, the origin of the pelvic fin under the last simple dorsal-fin ray, and a pointed axillary pelvic lobe divided from the body. The new species is further distinguished from the similar species H. pysnolepis in hav- ing shorter barbels, lacking a notch on the lower jaw, and lacking vermiform markings on top of the head. -
Karyological and Molecular Analysis of Three Endemic Loaches (Actinopterygii: Cobitoidea) from Kor River Basin, Iran
Molecular Biology Research Communications 2015;4(1):1-13 MBRC Original Article Open Access Karyological and molecular analysis of three endemic loaches (Actinopterygii: Cobitoidea) from Kor River basin, Iran Hamid Reza Esmaeili1,*, Zeinab Pirvar1, Mehragan Ebrahimi1, Matthias F. Geiger2 1) Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran 2) Zoological Research Museum Alexander Koenig, Leibniz Institute for Animal Biodiversity, Adenauerallee, Germany ABSTRACT This study provides new data on chromosomal characteristics and DNA barcoding of three endemic loaches of Iran: spiny southern loach Cobitis linea (Heckel, 1847), Persian stream loach Oxynoemacheilus persa (Heckel, 1848) and Tongiorgi stream loach Oxynoemacheilus tongiorgii (Nalbant & Bianco, 1998). The chromosomes of these fishes were investigated by examining metaphase chromosome spreads obtained from epithelial gill and kidney cells. The diploid chromosome numbers of all three species were 2n=50. The karyotypes of C. linea consisted of 4M + 40SM + 6ST, NF=94; of O. persa by 20M + 22SM + 8ST, NF=90 and of O. tongiorgii by 18M + 24SM + 8ST, NF= 92. Sex chromosomes were cytologically indistinguishable in these loaches. Maximum likelihood-based estimation of the phylogenetic relationships based on the COI barcode region clearly separates the three Iranian loach species of the Kor River basin. All species distinguished by morphological characters were recovered as monophyletic clades by the COI barcodes. The obtained results could be used for population studies,Archive management and conservatio n programs.of SID Key words: Loaches; Phylogenetic relationships; COI barcode region; Idiogram; Iran INTRODUCTION The confirmed freshwater ichthyofauna of Iran are represented by 202 species in 104 genera, 28 families, 17 orders and 3 classes found in 19 different basins [1]. -
Taxonomical Notes on Selected Freshwater Fish Species Described
Zoological Research 35 (2): 142−159 DOI:10.11813/j.issn.0254-5853.2014.2.142 Taxonomical notes on selected freshwater fish species described from northern and central Vietnam (Cypriniformes: Balitoridae, Cobitidae, Cyprinidae, Nemacheilidae; Perciformes: Channidae, Osphronemidae; Synbranchiformes: Mastacembelidae) Marco Endruweit* Qingshan Road 601, Qingdao, China Abstract: Selected, little known taxa of northern and central Vietnamese freshwater fish species are reviewed. Nomenclatural acts are taken: Hemibarbus lehoai is placed in synonymy of H. maculatus, Paracobitis hagiangensis in synonymy of Schistura caudofurca. A neotype of Micronemacheilus bacmeensis is assigned. The name Channa hanamensis is treated as a nomen nudum. Two labeonine species described from China are nomenclaturally affected: Garra findolabium is transferred to Vinagarra and its specific epithet is treated as a noun in apposition; the specific epithet of Sinigarra napoense is corrected to napoensis. Keywords: New species; Ichthyology; Taxonomy; Nomenclature; Vietnam The ichthyofauna of Vietnam can be well separated (2005a, 2005b) in chronological order.1Mai (1978) and into a northern and a southern biome. Geographically, Kottelat (2001b) are comparable, since they exclusively these biomes are split by central Vietnam's massive Ann- deal with northern Vietnamese freshwater and estuarine amite Range. The northern biome shares many species fishes, while Nguyen & Ngo (2001) and Nguyen (2005a, with South China, while the southern biome resembles b) cover the ichthyofauna of entire Vietnam. Mai (1978) species assemblages of the Indian-Malayan subcontinent. and Kottelat (2001b) give 201 and 268 species, The Annamite Range itself features a high endemism rate respectively, including some species that were of highly specialized species in short and steep torrential undescribed at that time. -
A New Species of Triplophysa (Cypriniformes, Nemacheilidae) from Weihe River in Gansu Province, China
ZOOLOGICAL RESEARCH A new species of Triplophysa (Cypriniformes, Nemacheilidae) from Weihe River in Gansu Province, China DEAR EDITOR, (Supplementary Table S1). Following an investigation of Triplophysa species from Weihe River (Figure 1A), 15 A new species of Tibetan loach, Triplophysa weiheensis sp. specimens superficially resembling Triplophysa stoliczkae nov., is described from the Weihe River in Gansu Province, Steindachner 1866 (Supplementary Figure S1) were collected China, based on morphological and molecular analyses. The and are described herein as a new species based on new species can be distinguished from all known congeners morphological and molecular analyses. by a unique combination of the following characters: scaleless; After euthanization (see Supplementary Methods), the left snout abruptly sloping downward, anterior to anterior nostril; ventral fin of some specimens was removed and preserved in lower jaw crescentic, not sharp; body without obvious mottling; 95% ethanol for DNA extraction. Voucher specimens were lateral line interrupted on posterior trunk at pelvic-fin distal labeled and stored in 70% ethanol. Specimens were deposited extremity; caudal-peduncle length 2.0–2.7 times its depth; in the collection of the Northwest Institute of Plateau Biology branched rays of pectoral fin 10–11; branched rays of pelvic (NWIPB), Chinese Academy of Sciences, Xining, Qinghai, fin 5–6; inner gill rakers on 1st gill arch 14–16; vertebrae China. Morphological measurements and counts followed 4+34–36; intestine with 6–7 loops, length ca. 1.8 times SL Kottelat (1990) and Prokofiev (2007). Additional (n=3); bony capsule of air bladder small and thin; posterior measurements are described in the Supplementary Methods. -
ZR-2020-229 Supplementary Material.Pdf
Supplementary Materials Supplementary Figure S1. Lateral views of species of Eonemachilus, A: E. altus, Holotype, KIZ1997001321; B: E. bajiangensis, uncatalogued 1st; C: E. caohaiensis, KIZ1996003125; D: E. qujinensis, Holotype, KIZ2013000639; E: E. niulanensis, Holotype, KIZ2006007730; F: E. longidorsalis, uncatalogued 1st; G: E. niger, Holotype, KIZ1980001275; H: E. nigromaculatus, KIZ0000001696; I: E. obtusirostris, Holotype, KIZ1987004000; J: E. pachycephalus, Holotype, KIZ1982002824. Scale = 1 cm. Supplementary Figure S2. Lateral views and nostrils of species of Heminoemacheilus, A, E: H. bailianensis, Holotype, NNNU201801, photo by JH Lan; B, F: H. zhengbaoshani, KIZ1999002968; C: H. hyalinus, Holotype, KIZ1994000011; D, G: H. longibarbatus, Paratype, KIZ2003006024, nostril photo by R. Min; AN = anterior nostril, PN = posterior nostril. Scale = 1 cm. Supplementary Figure S3. Lateral view of species Micronemacheilus pulcherrimus, KIZ1999001786. Scale = 1 cm. Supplementary Figure S4. Lateral views of species of Paranemachilus, A: P. jinxiensis, Holotype, KIZ2008008627; B: P. pingguoensis, GXNU20111003; C: P. genilepis, GXNU201908004. Supplementary Figure S5. Lateral views of species of Yunnanilus. A: Y. analis, Holotype, KIZ1960000625; B: Y. beipanjiangensis uncatalogued; C: Y. chui, Paratype, KIZ1989001596; D: Y. discoloris, Paratype, KIZ1983000938, female; E: Y. discoloris, Paratype, KIZ1983000943, male; F: Y. jiuchiensis, Holotype, KIZ2018000002, female; G: Y. jiuchiensis, Paratype, KIZ2018000009, male; H: Y. macrogaster, Holotype, -
Fao Kitap Kazakistan Son 31.08.10.Indd
28 Chapter 4 PROCESSING, MARKETING AND TRADING OF FISH AND FISH PRODUCTS Fish processing According to data from the Fisheries Committee, 49 enterprises in 2005 were involved in fi sh processing, and rose to 57 in 2006. Currently, fi sh processing and storage is completely controlled by the private sector (irrespective of geographical location). Fish processing enterprises can be divided into two groups: (i) older enterprises that have “inherited” equipment from Soviet times through privatization (e.g. Atyraubalyk, Balkhashbalyk and Zaisanbalyk); and (ii) new enterprises that have started their activities since the middle of the 1990s and that principally focus on the processing of zander fi llets; enterprises include Ulkenbalyk Ltd Co., Rybprom Ltd Co. and Karatalbalyk Ltd Co. These latter companies are noted for introducing new technologies in their operations – principally, skinning machines for removing the head and the fi lleting of zander – although the fi llet at present is cut and packed manually. The majority of fi sh processing plants are not HACCP or ISO certifi ed, but developments in this area are being made under pressure of the export markets. The Fisheries Committee suggests total investment in the fi sh processing sector amounted to US$195 000 in 2006. However, as many companies have increased their capacity in recent years, and the cost of an Individual Quick Frozen (IQF) freezer is around US$95 000, the real level of investment in the subsector is likely to be much higher, especially as private investment data are not included in the offi cial statistics. All the equipment is imported from either China or the Russian Federation.